Miyakogusa Predicted Gene

Lj6g3v0367990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0367990.1 Non Chatacterized Hit- tr|F6HQV0|F6HQV0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,48.35,0.00000000001,Hect, E3 ligase catalytic domain,HECT;
HECT,HECT; HECT UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS
PROTEIN),N,CUFF.57748.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02880.1 | Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:...    71   1e-13
AT4G38600.1 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubi...    66   4e-12
AT4G38600.2 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubi...    66   4e-12

>AT5G02880.1 | Symbols: UPL4 | ubiquitin-protein ligase 4 |
            chr5:662643-668847 FORWARD LENGTH=1502
          Length = 1502

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 9/81 (11%)

Query: 27   FQKLELGMWRGD----KGDKIDDQ-----PNGLFPHPYLSKTISIELFCHFTLLGYIVGR 77
            FQ  +LGMWR D     G  ++        +GLFP P+   + + ++   F LLG +V +
Sbjct: 1166 FQNPDLGMWRNDCSFIVGKPVEHSGVLASSSGLFPRPWSGTSTTSDVLQKFVLLGTVVAK 1225

Query: 78   ALQDGRILDLNFSKAFYKLII 98
            ALQDGR+LDL  SKAFYKLI+
Sbjct: 1226 ALQDGRVLDLPLSKAFYKLIL 1246


>AT4G38600.1 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain
            (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE
            LENGTH=1888
          Length = 1888

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 49/101 (48%), Gaps = 27/101 (26%)

Query: 25   HIFQKLELGMWRGDKGDKIDDQ---------------------PNGLFPHPYLSKTISIE 63
            H  QK  LGMWR   GDK+  Q                     P GLFP P+ S     E
Sbjct: 1522 HDLQKASLGMWRSSSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISE 1581

Query: 64   ------LFCHFTLLGYIVGRALQDGRILDLNFSKAFYKLII 98
                  +  +F LLG ++ +ALQDGR+LD+  S AFYKLI+
Sbjct: 1582 GGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLIL 1622


>AT4G38600.2 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain
            (ubiquitin-transferase) | chr4:18041503-18049073 REVERSE
            LENGTH=1794
          Length = 1794

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 49/101 (48%), Gaps = 27/101 (26%)

Query: 25   HIFQKLELGMWRGDKGDKIDDQ---------------------PNGLFPHPYLSKTISIE 63
            H  QK  LGMWR   GDK+  Q                     P GLFP P+ S     E
Sbjct: 1431 HDLQKASLGMWRSSSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISE 1490

Query: 64   ------LFCHFTLLGYIVGRALQDGRILDLNFSKAFYKLII 98
                  +  +F LLG ++ +ALQDGR+LD+  S AFYKLI+
Sbjct: 1491 GGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLIL 1531