Miyakogusa Predicted Gene
- Lj6g3v0367970.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0367970.2 Non Chatacterized Hit- tr|B9SL36|B9SL36_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,63.51,4e-19,Sel1,Sel1-like; UNKNOWN PROTEIN,NULL; SEL-1-LIKE
PROTEIN,NULL; no description,Tetratricopeptide-like,CUFF.57768.2
(101 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sel1-like ... 135 5e-33
AT5G05360.1 | Symbols: | unknown protein; INVOLVED IN: biologic... 133 3e-32
AT5G05360.2 | Symbols: | unknown protein; INVOLVED IN: biologic... 127 1e-30
>AT2G38450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sel1-like
(InterPro:IPR006597); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05360.1); Has 88
Blast hits to 88 proteins in 25 species: Archae - 0;
Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr2:16102016-16102683 FORWARD LENGTH=138
Length = 138
Score = 135 bits (340), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 14 VPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPKDAQKGRIWLTKASRV 73
VPLS VV+DC KRWFKDTL+EAK G+I MQVL+GQMY +GYGVPKDA+KGR+W+TKASRV
Sbjct: 55 VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114
Query: 74 RSSVWKVGDKRPGYNA 89
RSSVWKV DKRPGYNA
Sbjct: 115 RSSVWKVIDKRPGYNA 130
>AT5G05360.1 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84
proteins in 24 species: Archae - 0; Bacteria - 8;
Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). |
chr5:1588356-1589178 FORWARD LENGTH=163
Length = 163
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 66/78 (84%)
Query: 12 GRVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPKDAQKGRIWLTKAS 71
RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLVGQMYC+GYG+PKD KGR W+ KAS
Sbjct: 76 NRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKAS 135
Query: 72 RVRSSVWKVGDKRPGYNA 89
R RSS W+V DK PGYNA
Sbjct: 136 RTRSSAWQVSDKPPGYNA 153
>AT5G05360.2 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G38450.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:1588356-1589044 FORWARD LENGTH=153
Length = 153
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 64/76 (84%)
Query: 13 RVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPKDAQKGRIWLTKASR 72
RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLVGQMYC+GYG+PKD KGR W+ KASR
Sbjct: 77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKASR 136
Query: 73 VRSSVWKVGDKRPGYN 88
RSS W+V DK PG N
Sbjct: 137 TRSSAWQVSDKPPGNN 152