Miyakogusa Predicted Gene

Lj6g3v0365860.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0365860.3 Non Chatacterized Hit- tr|K4B1Q8|K4B1Q8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,37.69,5e-18,no
description,Zinc finger, RING/FYVE/PHD-type; no description,NULL;
SWIB/MDM2 domain,SWIB/MDM2 doma,CUFF.57745.3
         (973 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08430.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF | chr5:271...   295   8e-80
AT5G63700.1 | Symbols:  | zinc ion binding;DNA binding | chr5:25...   248   1e-65
AT2G16485.1 | Symbols:  | nucleic acid binding;zinc ion binding;...   214   2e-55
AT3G51120.1 | Symbols:  | DNA binding;zinc ion binding;nucleic a...   210   3e-54
AT5G23480.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF | chr5:791...   178   1e-44
AT2G18090.1 | Symbols:  | PHD finger family protein / SWIB compl...   155   2e-37
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    50   8e-06

>AT5G08430.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF |
           chr5:2716974-2720095 FORWARD LENGTH=553
          Length = 553

 Score =  295 bits (756), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 162/360 (45%), Positives = 236/360 (65%), Gaps = 16/360 (4%)

Query: 225 KKKEFIGWGSRNLIDFLKYTGRDTSRELSECDVALIITEYCKENKLFDPQKKRNIICDQQ 284
           K+ EF+GWGSR LI+FL   G+DTS  +S  DV+  I +Y  +  L DP  K+ ++CD++
Sbjct: 25  KRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKR 84

Query: 285 LRSLLGRRSVNRNNIQNLLAPHFAENFKEMDDVTSSSEDRDDNEPFVISTRRKLISSTKP 344
           L  L G R++ R  + +LL  H+ EN    DD  S  +   ++EP +I    K+   T  
Sbjct: 85  LVLLFGTRTIFRMKVYDLLEKHYKEN---QDD--SDFDFLYEDEPQIICHSEKIAKRTSK 139

Query: 345 CQNIVSKKTQSFFAAIISSNLKLVYLKRSLLEELLKQPDTFDSKVFGSFVRIKSDPNDYL 404
               V KK +  FAAI+S N+KL+YL++SL++ELLK PDTF+ K+ GSFVRIKSDPNDYL
Sbjct: 140 ----VVKKPRGTFAAIVSDNIKLLYLRKSLVQELLKSPDTFEGKMLGSFVRIKSDPNDYL 195

Query: 405 QKNSHLLLPVVGINRSSKNDENNKEILLKLSHVPKGVPICKISDDDFTEEECQDLYQRMR 464
           QK  + L+ V G+ +    D+     LL++++  K V I  +SDD+F++EEC+DL+QR++
Sbjct: 196 QKYPYQLVQVTGVKKEHGTDD----FLLQVTNYVKDVSISVLSDDNFSQEECEDLHQRIK 251

Query: 465 SGLLKQPTILELEQKARCLHEDIIKHWIPRELALLQNRIDQANEKGRRRELSEYLDRKLK 524
           +GLLK+PTI+E+E+KA+ LH+D  KHW+ RE+ LL+  ID+ANEKG RRELSEYLD++  
Sbjct: 252 NGLLKKPTIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRRELSEYLDKREL 311

Query: 525 LETPLEQSLLLSNIPKVIPEIVDTNP---SPEGSPSKDKLEQNGLPELAIGETCDSDGCY 581
           L+ P EQ+ LL  +P+VI E +  NP   SPE   S ++   +  P   I ET ++   +
Sbjct: 312 LQNPDEQARLLREVPEVIGEELVQNPEVSSPEAHKSDNEQRLSESPLSCIHETPEARNLF 371


>AT5G63700.1 | Symbols:  | zinc ion binding;DNA binding |
           chr5:25493934-25497632 REVERSE LENGTH=602
          Length = 602

 Score =  248 bits (633), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/341 (40%), Positives = 213/341 (62%), Gaps = 18/341 (5%)

Query: 224 DKKKEFIGWGSRNLIDFLKYTGRDTSRELSECDVALIITEYCKENKLFDPQKKRNIICDQ 283
           +K+ EFI WGS+ LIDFL   G DT   +S+  V  +I  Y +E  L D +KK+ + CD+
Sbjct: 254 NKRMEFIRWGSKPLIDFLTSIGEDTREAMSQHSVESVIRRYIREKNLLDREKKKKVHCDE 313

Query: 284 QLRSLLGRRSVNRNNIQNLLAPHFAENFKEMDDVT-------SSSEDR--DDNEPFVIST 334
           +L S+  ++S+N+  I  LL  H  EN  +++  T         +E R  + N+  ++  
Sbjct: 314 KLYSIFRKKSINQKRIYTLLNTHLKENLDQVEYFTPLELGFIEKNEKRFSEKNDKVMMPC 373

Query: 335 RRKLISST--KPCQNIVSKKTQSF-FAAIISSNLKLVYLKRSLLEELLKQPDTFDSKVFG 391
           +++   S+  + C+  V  + ++  FA I + NLKLVYL++SL+ ELLKQ D+F  KV G
Sbjct: 374 KKQKTESSDDEICEKEVQPEMRATGFATINADNLKLVYLRKSLVLELLKQNDSFVDKVVG 433

Query: 392 SFVRIKSDPNDYLQKNSHLLLPVVGINRSSKNDENNKEILLKLSHVPKGVPICKISDDDF 451
           SFV++K+ P D++   ++ +L V GI  +   D+ ++ +LL +S +  GV I K+ D D 
Sbjct: 434 SFVKVKNGPRDFM---AYQILQVTGIKNA---DDQSEGVLLHVSGMASGVSISKLDDSDI 487

Query: 452 TEEECQDLYQRMRSGLLKQPTILELEQKARCLHEDIIKHWIPRELALLQNRIDQANEKGR 511
            EEE +DL Q++ +GLL+Q T++E+EQKA+ LH DI KHWI R+L +LQ RI+ ANEKG 
Sbjct: 488 REEEIKDLKQKVMNGLLRQTTVVEMEQKAKALHYDITKHWIARQLNILQKRINCANEKGW 547

Query: 512 RRELSEYLDRKLKLETPLEQSLLLSNIPKVIPEIVDTNPSP 552
           RREL EYL+++  LE P EQ  LL  IP++I + ++    P
Sbjct: 548 RRELEEYLEQRELLEKPSEQERLLKEIPRIIEDFIEIKQEP 588



 Score =  143 bits (360), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 82/135 (60%)

Query: 17  WCFVCKDGGLLRVCDYGDCLKAYHPRCVGYDDTFLEDDSYWTCGSHFCDRCRKTSQFRCL 76
           WCF+CKDGG L +CD+ DC K YH  CV  D +  ++   + C  H C  C+KT +  CL
Sbjct: 24  WCFICKDGGNLMLCDFKDCPKVYHESCVEKDSSASKNGDSYICMWHSCYLCKKTPKLCCL 83

Query: 77  CCPSAVCGKCIYFGEFAIIKGKKGVCRHCSKLAFLIEGNADVDSDGGNIDFKDRETYECL 136
           CC  AVC  C+   EF  +KG KG+C  C +  F +E   + D+ G  +D  DR T+ECL
Sbjct: 84  CCSHAVCEGCVTHAEFIQLKGDKGLCNQCQEYVFALEEIQEYDAAGDKLDLTDRNTFECL 143

Query: 137 FAEYYEIIKKEEGLN 151
           F EY+EI KK+EGL 
Sbjct: 144 FLEYWEIAKKQEGLT 158


>AT2G16485.1 | Symbols:  | nucleic acid binding;zinc ion binding;DNA
            binding | chr2:7137269-7145222 REVERSE LENGTH=1773
          Length = 1773

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/561 (27%), Positives = 265/561 (47%), Gaps = 49/561 (8%)

Query: 15   EDWCFVCKDGGLLRVCDYGDCLKAYHPRCVGYDDTFLEDDSYWTCGSHFCDRCRKTSQFR 74
            ED CF+C DGG L +CD   C KAYHP CV  D+ F +    W CG H C +C KT+ + 
Sbjct: 599  EDVCFMCFDGGDLVLCDRRGCTKAYHPSCVDRDEAFFQTKGKWNCGWHLCSKCEKTATYL 658

Query: 75   CLCCPSAVCGKCIYFGEFAIIKGKKGVCRHCSKLAFLIEGNADVDSDGGNIDFKDRETYE 134
            C  C  ++C  C     F  I+G KG+C  C +   LIE     + +   +DF D+ ++E
Sbjct: 659  CYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIE-RKQQEKEPAQLDFNDKTSWE 717

Query: 135  CLFAEYYEIIKKEEGLNSQHVHSARNFLKNSKNKSXXXXXXXXXXXXXXXXXXXXXXXXX 194
             LF +Y+  +K +  L+ + +  A+  LK  +  +                         
Sbjct: 718  YLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASETDYVTDGGSDS------ 771

Query: 195  XXCDDLNVRDGVXXXXXXXXXXXXXXXXGDK--KKEFIGWGSRNLIDFLKYTGRDTSREL 252
                D + +                   GDK    E + W S+ L+D + +  R     L
Sbjct: 772  ----DSSPKKRKTRSRSKSGSAEKILSSGDKNLSDETMEWASKELLDLVVHMRRGDRSFL 827

Query: 253  SECDVALIITEYCKENKLFDPQKKRNIICDQQLRSLLGRRSVNRNNIQNLLAPHFAENFK 312
               +V  ++  Y K   L DP++K  +ICD +L++L G+  V    + NLL  HF +  +
Sbjct: 828  PMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSHFLKKEQ 887

Query: 313  -EMDDVTSSSEDRDDNEPFVISTRRKLISSTKPCQNIVSKKTQSF-----------FAAI 360
             + DD+     D +  EP  +     L    K  ++   K  +             FAA+
Sbjct: 888  NQADDIQGDIVDTE--EPNHVDVDENLDHPVKSGKDKKRKTRKKNVRKGRQSNLDDFAAV 945

Query: 361  ISSNLKLVYLKRSLLEELLKQPDTFDSKVFGSFVRIKSDPNDYLQKNSHLLLPVVGINRS 420
               N+ L+YL+RSL+E+LL+    F+ KV  +FVR++   N   +++ + L+ VVG +++
Sbjct: 946  DMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISGNQ--KQDLYRLVQVVGTSKA 1003

Query: 421  S---KNDENNKEILLKLSHVPKG--VPICKISDDDFTEEECQDLYQRMRSGLLKQPTILE 475
                K  +   + +L++ ++ K   + I  IS+ DFTE+EC+ L Q ++ GL+ + T+ +
Sbjct: 1004 PEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDECKRLKQSIKCGLINRLTVGD 1063

Query: 476  LEQKARCLHEDIIKHWIPRELALLQNRIDQANEKGRRRE---------------LSEYLD 520
            +++KA  L E  +K+ +  E+    +  D+A++ GRR+E               L E ++
Sbjct: 1064 IQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEYPYLLKLSNSLTMLTLRECVE 1123

Query: 521  RKLKLETPLEQSLLLSNIPKV 541
            +   L++P E+   L  IP++
Sbjct: 1124 KLQLLKSPEERQRRLEEIPEI 1144


>AT3G51120.1 | Symbols:  | DNA binding;zinc ion binding;nucleic acid
           binding;nucleic acid binding | chr3:18986026-18991886
           REVERSE LENGTH=1292
          Length = 1292

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 159/564 (28%), Positives = 260/564 (46%), Gaps = 47/564 (8%)

Query: 18  CFVCKDGGLLRVCDYGDCLKAYHPRCVGYDDTFLEDDSYWTCGSHFCDRCRKTSQFRCLC 77
           CF+C DGG L +CD  +C KAYHP C+  D+ F    + W CG H C  C+K S + C  
Sbjct: 113 CFICFDGGDLVLCDRRNCPKAYHPACIKRDEAFFRTTAKWNCGWHICGTCQKASSYMCYT 172

Query: 78  CPSAVCGKCIYFGEFAIIKGKKGVCRHCSKLAFLIEGNADVDSDGGNIDFKDRETYECLF 137
           C  +VC +CI   ++ I++G  G+C  C K   LIE  A  D++   +DF D+ ++E LF
Sbjct: 173 CTFSVCKRCIKDADYVIVRGNMGLCGTCIKPIMLIENIAQGDNEAVKVDFDDKLSWEYLF 232

Query: 138 AEYYEIIKKEEGLNSQHVHSARNFLKNSKNKSXXXXXXXXXXXXXXXXXXXXXXXXXXXC 197
             Y+  +K+E  L    +  A N  K   N +                            
Sbjct: 233 KVYWLCLKEELSLTVDELTRANNPWKEVPNTAPKVESQNDHTNNRALDVAVNGTKRRRTS 292

Query: 198 DDLNVRDGVXXXXXXXXXXXXXXXXGDKKKEFIGWGSRNLIDFLKYTGRDTSRELSECDV 257
           D   + + +                GD       W ++ L++F+ +     +  LS+ DV
Sbjct: 293 DSPTLPNKL---DGKNPSNILKKAPGD-----TSWATKELLEFVSFMKNGDTSVLSQFDV 344

Query: 258 ALIITEYCKENKLFDPQKKRNIICDQQLRSLLGRRSVNRNNIQNLLAPHF---------- 307
             ++ +Y K+  L DP +K  ++CDQ L  L G++ V    +  LL  H           
Sbjct: 345 QGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESHVLIQEKPKGAK 404

Query: 308 AENFKEMDDVTSSSEDRDDNEPFVISTRRKLISSTKPCQNIVSKKTQSFFAAIISSNLKL 367
             N +    V S  E+   ++P V   RRK+   T      V  +    +AAI   N+ L
Sbjct: 405 TTNGETTHAVPSQIEEDSVHDPMVRDRRRKMRRKT---DGRVQNENLDAYAAIDVHNINL 461

Query: 368 VYLKRSLLEELLKQPDTFDSKVFGSFVRIKSDPNDYLQKNSHLLLPVVGINR---SSKND 424
           +YL+R  LE LL   +  D KV G+ +RIK   +D  + + H L+ VVG ++   S +  
Sbjct: 462 IYLRRKFLESLLDDINKVDEKVVGTILRIKVSGSDQ-KLDIHRLVQVVGTSKAIASYQLG 520

Query: 425 ENNKEILLKLSHVPKG--VPICKISDDDFTEEECQDLYQRMRSGLLKQPTILELEQKARC 482
               +++L++ ++ K   + I ++SD + TE+EC+ L Q ++ GL K+ T++++ + A  
Sbjct: 521 AKTTDVMLEILNLDKREVISIDQLSDQNITEDECKRLRQSIKCGLNKRLTVVDILKTAAT 580

Query: 483 LHEDIIKHWIPRELALLQNRIDQANEKGRRRELSEYLDRKLKLETPLEQSLLLSNIPKVI 542
           L    I   +  E+  L +  D+A    ++ EL         L++P E+  LL  +P+  
Sbjct: 581 LQAMRINEALEAEILKLNHLRDRA----KKLEL---------LKSPEERQRLLQEVPE-- 625

Query: 543 PEIVDTNPSPEGSPSKDKLEQNGL 566
              V T+PS +  PS    E  GL
Sbjct: 626 ---VHTDPSMD--PSHALSEDAGL 644


>AT5G23480.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF |
           chr5:7916314-7919155 FORWARD LENGTH=570
          Length = 570

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 220/434 (50%), Gaps = 95/434 (21%)

Query: 225 KKKEFIGWGSRNLIDFLKYTGRDTSRELSECDVALIITEYCKENKLFDP----QKKRNII 280
           K  EF+GWGSRNLI+FL+  GRDT+ ++SE DV  II  Y +E     P    ++++ + 
Sbjct: 20  KSLEFVGWGSRNLIEFLESLGRDTTNKISENDVTAIIMNYIREKSRETPLKSKKRRKTVA 79

Query: 281 CDQQLRSLLGRRSVNRNNIQNLLAPHFAENFKE---MDDVTSSSEDRDDNEPFVISTRRK 337
           CD++LR L G   +N   + +L+  H+ EN +E    DD+ +S +D+       +S   K
Sbjct: 80  CDEKLRLLFGAGKINVIKVPDLVEKHYVENQEEDLFYDDLYASEDDKQQR----LSLSDK 135

Query: 338 LISSTKPCQNIVSKKTQSFFAAIISSNLKLVYLKRSLLEELLKQPDTFDSKVFGSFVRIK 397
           +   TK    +VSK  +  FAAI+   +KL+YL++SL++EL K P+TF+SKV  +FVRIK
Sbjct: 136 VAKQTK---QVVSK-PRGTFAAIVRDTVKLLYLRKSLVQELAKTPETFESKVVRTFVRIK 191

Query: 398 SDPNDYLQKNSHLLLPVVGINRSSKNDENNKEILLKLSHVPKGVPICKISDDDFTEEECQ 457
                    N   L+ V G+      D N  ++    S+  K V    +SDDDF++EEC+
Sbjct: 192 ---------NPCQLVHVTGVKEGDPIDGNLFQVT-NYSYYLKDVTTSSLSDDDFSQEECE 241

Query: 458 DLYQRMRSGLLKQPTILELEQKARCLHEDIIKHWIPRELALLQN---------------- 501
           +L+QR+ +G  K+ T++++E+KAR LHED ++    RE  LLQN                
Sbjct: 242 ELHQRINNGFAKRLTVVDMEEKARSLHEDYLEK---RE--LLQNPDEQKRLVDEVPEIVA 296

Query: 502 -------------------------RIDQANEKGRRREL------SEYLDRKLKLETPLE 530
                                       Q++++ R+R+L       +  +  L L+ P E
Sbjct: 297 EELEPECEDDDDDRTIEDSLIVPNPEAHQSDKEQRQRDLPVSSSVKKSQENSLLLKNPEE 356

Query: 531 QSLLLSNIPKVI-----PEIVD---------TNPSP----EGSPSKDKLEQNGLPELAIG 572
           Q  LL ++P V+     PE VD         T P+P    E   S ++++ + LP+ +I 
Sbjct: 357 QLRLLCDVPDVVAEKLEPEFVDDDGKLVNDATVPNPEAFTEAHQSDEEIQPSDLPDSSIQ 416

Query: 573 ETCDSDGCYSKHNG 586
           +T +    ++   G
Sbjct: 417 KTLEDQPIWTASAG 430


>AT2G18090.1 | Symbols:  | PHD finger family protein / SWIB complex
           BAF60b domain-containing protein / GYF domain-containing
           protein | chr2:7864501-7867317 FORWARD LENGTH=824
          Length = 824

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 9/309 (2%)

Query: 7   KRRKEEIAEDWCFVCKDGGLLRVCDYGDCLKAYHPRCVGYDDTFLEDDSYWTCGSHFCDR 66
           ++R+E+  ED CFVC DGG L +CD   C KAYHP CV   + F    S W CG H C  
Sbjct: 73  RKRRED--EDVCFVCFDGGSLVLCDRRGCPKAYHPACVKRTEAFFRSRSKWNCGWHICTT 130

Query: 67  CRKTSQFRCLCCPSAVCGKCIYFGEFAIIKGKKGVCRHCSKLAFLIEGNADVDSDGGNID 126
           C+K S + C  CP +VC +C+   E+ +++  KG C  C K   LIE  A+ + +   +D
Sbjct: 131 CQKDSFYMCYTCPYSVCKRCVRSSEYVVVRENKGFCGICMKTIMLIENAAEANKEKVQVD 190

Query: 127 FKDRETYECLFAEYYEIIKKEEGLNSQHVHSARNFLKNSKNKSXXXXXXXXXXXXXXXXX 186
           F D+ ++E LF  Y+  +K++ GL+   +  A+N  K+S + +                 
Sbjct: 191 FDDQGSWEYLFKIYWVSLKEKLGLSLDDLTKAKNPWKSSSSTAAKRRTTSRVHEKDDGNS 250

Query: 187 XXXXXXXXXXCDDLNVRDGVXXXXXXXXXXXXXXXXGDKKKEFIG---WGSRNLIDFLKY 243
                        ++                     GD+  +      W +  L+DF+ Y
Sbjct: 251 PGVMKIRRAKVRKMD----AVSVSNLGPSLDSNCSLGDRLPQLTSAATWATNELLDFVGY 306

Query: 244 TGRDTSRELSECDVALIITEYCKENKLFDPQKKRNIICDQQLRSLLGRRSVNRNNIQNLL 303
                   LS+ DV  ++ EY + N L +  +   I+CD +L  L G+  V+   +  LL
Sbjct: 307 MKNGDISVLSKYDVQTLVLEYVRRNNLQNSPQNSEIMCDSKLMRLFGKERVDNLEMLKLL 366

Query: 304 APHFAENFK 312
             HF +  +
Sbjct: 367 DSHFIDQVR 375


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD LENGTH=372
          Length = 372

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 243 YTGRDTSRELSECDVALIITEYCKENKLFDPQKKRNIICDQQLRSLLGRRSVNRNNIQNL 302
           +TG   + +L+  +V  ++ +Y KEN L DP  KR IICD+ LRSL    S+N   +   
Sbjct: 264 FTG---TPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFPVESINMFQMNKQ 320

Query: 303 LAPHF 307
           LA H 
Sbjct: 321 LAKHI 325