Miyakogusa Predicted Gene

Lj6g3v0365860.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0365860.2 Non Chatacterized Hit- tr|K3XDQ8|K3XDQ8_SETIT
Uncharacterized protein OS=Setaria italica GN=Si000025,34.17,2e-18,no
description,Zinc finger, RING/FYVE/PHD-type; FYVE/PHD zinc finger,Zinc
finger, FYVE/PHD-type; Sho,CUFF.57745.2
         (619 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08430.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF | chr5:271...   216   4e-56
AT5G63700.1 | Symbols:  | zinc ion binding;DNA binding | chr5:25...   170   2e-42
AT2G18090.1 | Symbols:  | PHD finger family protein / SWIB compl...   139   8e-33
AT3G51120.1 | Symbols:  | DNA binding;zinc ion binding;nucleic a...   126   5e-29
AT2G16485.1 | Symbols:  | nucleic acid binding;zinc ion binding;...   125   7e-29
AT5G23480.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF | chr5:791...   115   1e-25

>AT5G08430.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF |
           chr5:2716974-2720095 FORWARD LENGTH=553
          Length = 553

 Score =  216 bits (550), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 150/203 (73%), Gaps = 4/203 (1%)

Query: 197 KTQNCLAAIVSSNLKLVYLKRSLLEELLKQPENFDSKVCGSFVRIKSDPNNNLQKNSHLL 256
           K +   AAIVS N+KL+YL++SL++ELLK P+ F+ K+ GSFVRIKSDPN+ LQK  + L
Sbjct: 143 KPRGTFAAIVSDNIKLLYLRKSLVQELLKSPDTFEGKMLGSFVRIKSDPNDYLQKYPYQL 202

Query: 257 VQVKGINRSSQNDENNKEILLQLSHVPKDVPICKISDDDFTEEECQDLYQRMRNGLLKQP 316
           VQV G+ +    D+     LLQ+++  KDV I  +SDD+F++EEC+DL+QR++NGLLK+P
Sbjct: 203 VQVTGVKKEHGTDD----FLLQVTNYVKDVSISVLSDDNFSQEECEDLHQRIKNGLLKKP 258

Query: 317 TKLELEQKARSLHEDIIKHWIPRELAFLQNRIDWANEKRQRRKLSEYLDKRTELENQQEQ 376
           T +E+E+KA+ LH+D  KHW+ RE+  L+  ID ANEK  RR+LSEYLDKR  L+N  EQ
Sbjct: 259 TIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRRELSEYLDKRELLQNPDEQ 318

Query: 377 ARLLRNIPRVIPEDKLDSDGCSS 399
           ARLLR +P VI E+ + +   SS
Sbjct: 319 ARLLREVPEVIGEELVQNPEVSS 341


>AT5G63700.1 | Symbols:  | zinc ion binding;DNA binding |
           chr5:25493934-25497632 REVERSE LENGTH=602
          Length = 602

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 129/186 (69%), Gaps = 6/186 (3%)

Query: 202 LAAIVSSNLKLVYLKRSLLEELLKQPENFDSKVCGSFVRIKSDPNNNLQKNSHLLVQVKG 261
            A I + NLKLVYL++SL+ ELLKQ ++F  KV GSFV++K+ P + +   ++ ++QV G
Sbjct: 399 FATINADNLKLVYLRKSLVLELLKQNDSFVDKVVGSFVKVKNGPRDFM---AYQILQVTG 455

Query: 262 INRSSQNDENNKEILLQLSHVPKDVPICKISDDDFTEEECQDLYQRMRNGLLKQPTKLEL 321
           I  +   D+ ++ +LL +S +   V I K+ D D  EEE +DL Q++ NGLL+Q T +E+
Sbjct: 456 IKNA---DDQSEGVLLHVSGMASGVSISKLDDSDIREEEIKDLKQKVMNGLLRQTTVVEM 512

Query: 322 EQKARSLHEDIIKHWIPRELAFLQNRIDWANEKRQRRKLSEYLDKRTELENQQEQARLLR 381
           EQKA++LH DI KHWI R+L  LQ RI+ ANEK  RR+L EYL++R  LE   EQ RLL+
Sbjct: 513 EQKAKALHYDITKHWIARQLNILQKRINCANEKGWRRELEEYLEQRELLEKPSEQERLLK 572

Query: 382 NIPRVI 387
            IPR+I
Sbjct: 573 EIPRII 578



 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 83/140 (59%)

Query: 17  WCFECMDGGKLRVCDYRGCLKAYHPDCVGKDDSFLEDNSHWTCRSHFCHRCGKTSKFWCL 76
           WCF C DGG L +CD++ C K YH  CV KD S  ++   + C  H C+ C KT K  CL
Sbjct: 24  WCFICKDGGNLMLCDFKDCPKVYHESCVEKDSSASKNGDSYICMWHSCYLCKKTPKLCCL 83

Query: 77  CCPNAVCRNCTNLGEFAVVKGRKGFCRHCSKLAFLIEENAGVDSDGENVDFKDRETYECL 136
           CC +AVC  C    EF  +KG KG C  C +  F +EE    D+ G+ +D  DR T+ECL
Sbjct: 84  CCSHAVCEGCVTHAEFIQLKGDKGLCNQCQEYVFALEEIQEYDAAGDKLDLTDRNTFECL 143

Query: 137 FSEYYEIIKKKEGLNSQHVQ 156
           F EY+EI KK+EGL    V+
Sbjct: 144 FLEYWEIAKKQEGLTFDDVR 163


>AT2G18090.1 | Symbols:  | PHD finger family protein / SWIB complex
           BAF60b domain-containing protein / GYF domain-containing
           protein | chr2:7864501-7867317 FORWARD LENGTH=824
          Length = 824

 Score =  139 bits (349), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 88/155 (56%)

Query: 15  EDWCFECMDGGKLRVCDYRGCLKAYHPDCVGKDDSFLEDNSHWTCRSHFCHRCGKTSKFW 74
           ED CF C DGG L +CD RGC KAYHP CV + ++F    S W C  H C  C K S + 
Sbjct: 79  EDVCFVCFDGGSLVLCDRRGCPKAYHPACVKRTEAFFRSRSKWNCGWHICTTCQKDSFYM 138

Query: 75  CLCCPNAVCRNCTNLGEFAVVKGRKGFCRHCSKLAFLIEENAGVDSDGENVDFKDRETYE 134
           C  CP +VC+ C    E+ VV+  KGFC  C K   LIE  A  + +   VDF D+ ++E
Sbjct: 139 CYTCPYSVCKRCVRSSEYVVVRENKGFCGICMKTIMLIENAAEANKEKVQVDFDDQGSWE 198

Query: 135 CLFSEYYEIIKKKEGLNSQHVQSARNFLKNSKNKS 169
            LF  Y+  +K+K GL+   +  A+N  K+S + +
Sbjct: 199 YLFKIYWVSLKEKLGLSLDDLTKAKNPWKSSSSTA 233


>AT3G51120.1 | Symbols:  | DNA binding;zinc ion binding;nucleic acid
           binding;nucleic acid binding | chr3:18986026-18991886
           REVERSE LENGTH=1292
          Length = 1292

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 80/152 (52%)

Query: 18  CFECMDGGKLRVCDYRGCLKAYHPDCVGKDDSFLEDNSHWTCRSHFCHRCGKTSKFWCLC 77
           CF C DGG L +CD R C KAYHP C+ +D++F    + W C  H C  C K S + C  
Sbjct: 113 CFICFDGGDLVLCDRRNCPKAYHPACIKRDEAFFRTTAKWNCGWHICGTCQKASSYMCYT 172

Query: 78  CPNAVCRNCTNLGEFAVVKGRKGFCRHCSKLAFLIEENAGVDSDGENVDFKDRETYECLF 137
           C  +VC+ C    ++ +V+G  G C  C K   LIE  A  D++   VDF D+ ++E LF
Sbjct: 173 CTFSVCKRCIKDADYVIVRGNMGLCGTCIKPIMLIENIAQGDNEAVKVDFDDKLSWEYLF 232

Query: 138 SEYYEIIKKKEGLNSQHVQSARNFLKNSKNKS 169
             Y+  +K++  L    +  A N  K   N +
Sbjct: 233 KVYWLCLKEELSLTVDELTRANNPWKEVPNTA 264



 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 19/211 (9%)

Query: 200 NCLAAIVSSNLKLVYLKRSLLEELLKQPENFDSKVCGSFVRIKSDPNNNLQKNSHLLVQV 259
           +  AAI   N+ L+YL+R  LE LL      D KV G+ +RIK    ++ + + H LVQV
Sbjct: 449 DAYAAIDVHNINLIYLRRKFLESLLDDINKVDEKVVGTILRIKVS-GSDQKLDIHRLVQV 507

Query: 260 KGINR---SSQNDENNKEILLQLSHVPKD--VPICKISDDDFTEEECQDLYQRMRNGLLK 314
            G ++   S Q      +++L++ ++ K   + I ++SD + TE+EC+ L Q ++ GL K
Sbjct: 508 VGTSKAIASYQLGAKTTDVMLEILNLDKREVISIDQLSDQNITEDECKRLRQSIKCGLNK 567

Query: 315 QPTKLELEQKARSLHEDIIKHWIPRELAFLQNRIDWANEKRQRRKLSEYLDKRTELENQQ 374
           + T +++ + A +L    I   +  E+  L       N  R R K  E       L++ +
Sbjct: 568 RLTVVDILKTAATLQAMRINEALEAEILKL-------NHLRDRAKKLEL------LKSPE 614

Query: 375 EQARLLRNIPRVIPEDKLDSDGCSSKHNGLG 405
           E+ RLL+ +P V  +  +D     S+  GLG
Sbjct: 615 ERQRLLQEVPEVHTDPSMDPSHALSEDAGLG 645


>AT2G16485.1 | Symbols:  | nucleic acid binding;zinc ion binding;DNA
           binding | chr2:7137269-7145222 REVERSE LENGTH=1773
          Length = 1773

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 1/149 (0%)

Query: 15  EDWCFECMDGGKLRVCDYRGCLKAYHPDCVGKDDSFLEDNSHWTCRSHFCHRCGKTSKFW 74
           ED CF C DGG L +CD RGC KAYHP CV +D++F +    W C  H C +C KT+ + 
Sbjct: 599 EDVCFMCFDGGDLVLCDRRGCTKAYHPSCVDRDEAFFQTKGKWNCGWHLCSKCEKTATYL 658

Query: 75  CLCCPNAVCRNCTNLGEFAVVKGRKGFCRHCSKLAFLIEENAGVDSDGENVDFKDRETYE 134
           C  C  ++C+ C     F  ++G KG C  C +   LIE     + +   +DF D+ ++E
Sbjct: 659 CYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQ-QEKEPAQLDFNDKTSWE 717

Query: 135 CLFSEYYEIIKKKEGLNSQHVQSARNFLK 163
            LF +Y+  +K +  L+ + +  A+  LK
Sbjct: 718 YLFKDYWIDLKTQLSLSPEELDQAKRPLK 746



 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 121/214 (56%), Gaps = 22/214 (10%)

Query: 202  LAAIVSSNLKLVYLKRSLLEELLKQPENFDSKVCGSFVRIKSDPNNNLQKNSHLLVQVKG 261
             AA+   N+ L+YL+RSL+E+LL+    F+ KV  +FVR++   + N +++ + LVQV G
Sbjct: 942  FAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRI--SGNQKQDLYRLVQVVG 999

Query: 262  INRSSQNDENNK---EILLQLSHVPKD--VPICKISDDDFTEEECQDLYQRMRNGLLKQP 316
             +++ +  +  K   + +L++ ++ K   + I  IS+ DFTE+EC+ L Q ++ GL+ + 
Sbjct: 1000 TSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDECKRLKQSIKCGLINRL 1059

Query: 317  TKLELEQKARSLHEDIIKHWIPRELAFLQNRIDWANEKRQRRK---------------LS 361
            T  ++++KA +L E  +K+ +  E+    +  D A++  +R++               L 
Sbjct: 1060 TVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEYPYLLKLSNSLTMLTLR 1119

Query: 362  EYLDKRTELENQQEQARLLRNIPRVIPEDKLDSD 395
            E ++K   L++ +E+ R L  IP +  + K+D D
Sbjct: 1120 ECVEKLQLLKSPEERQRRLEEIPEIHADPKMDPD 1153


>AT5G23480.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF |
           chr5:7916314-7919155 FORWARD LENGTH=570
          Length = 570

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 41/191 (21%)

Query: 197 KTQNCLAAIVSSNLKLVYLKRSLLEELLKQPENFDSKVCGSFVRIKSDPNNNLQKNSHLL 256
           K +   AAIV   +KL+YL++SL++EL K PE F+SKV  +FVRIK         N   L
Sbjct: 146 KPRGTFAAIVRDTVKLLYLRKSLVQELAKTPETFESKVVRTFVRIK---------NPCQL 196

Query: 257 VQVKGINRSSQNDENNKEILLQLSHVPKDVPICKISDDDFTEEECQDLYQRMRNGLLKQP 316
           V V G+      D N  ++    S+  KDV    +SDDDF++EEC++L+QR+ NG  K+ 
Sbjct: 197 VHVTGVKEGDPIDGNLFQVT-NYSYYLKDVTTSSLSDDDFSQEECEELHQRINNGFAKRL 255

Query: 317 TKLELEQKARSLHEDIIKHWIPRELAFLQNRIDWANEKRQRRKLSEYLDKRTELENQQEQ 376
           T +++E+KARSLHED                               YL+KR  L+N  EQ
Sbjct: 256 TVVDMEEKARSLHED-------------------------------YLEKRELLQNPDEQ 284

Query: 377 ARLLRNIPRVI 387
            RL+  +P ++
Sbjct: 285 KRLVDEVPEIV 295