Miyakogusa Predicted Gene

Lj6g3v0365860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0365860.1 tr|B9I119|B9I119_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568469 PE=4 SV=1,48.7,8e-19,ZINC
FINGER (CCCH-TYPE) PROTEIN-LIKE (OS01G0884500 PROTEIN),NULL; GRB10
INTERACTING GYF PROTEIN,NULL,CUFF.57745.1
         (324 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08430.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF | chr5:271...   102   3e-22
AT5G63700.1 | Symbols:  | zinc ion binding;DNA binding | chr5:25...   102   3e-22

>AT5G08430.1 | Symbols:  | SWIB/MDM2 domain;Plus-3;GYF |
           chr5:2716974-2720095 FORWARD LENGTH=553
          Length = 553

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 66/82 (80%)

Query: 1   MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
           ++NGLLK+PTI+E+E+KA+ LH+D  KHW+ RE++LL+  ID+ANE+G RRELS+Y+D++
Sbjct: 250 IKNGLLKKPTIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRRELSEYLDKR 309

Query: 61  LKLETPLEQTRLLSNIPNVIPE 82
             L+ P EQ RLL  +P VI E
Sbjct: 310 ELLQNPDEQARLLREVPEVIGE 331


>AT5G63700.1 | Symbols:  | zinc ion binding;DNA binding |
           chr5:25493934-25497632 REVERSE LENGTH=602
          Length = 602

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 64/88 (72%)

Query: 3   NGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRKLK 62
           NGLL+Q T++E+EQKA++LH DI KHWI R+L +LQ RI+ ANE+G RREL +Y++++  
Sbjct: 501 NGLLRQTTVVEMEQKAKALHYDITKHWIARQLNILQKRINCANEKGWRRELEEYLEQREL 560

Query: 63  LETPLEQTRLLSNIPNVIPEIADSNLSP 90
           LE P EQ RLL  IP +I +  +    P
Sbjct: 561 LEKPSEQERLLKEIPRIIEDFIEIKQEP 588