Miyakogusa Predicted Gene

Lj6g3v0352720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0352720.1 Non Chatacterized Hit- tr|B8ANZ2|B8ANZ2_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,65.28,5e-17,eIF-5_eIF-2B,Translation initiation factor IF2/IF5;
SUBFAMILY NOT NAMED,NULL; EUKARYOTIC TRANSLATION,CUFF.57730.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20920.2 | Symbols: EIF2 BETA | eukaryotic translation initia...   243   2e-65
AT5G20920.3 | Symbols: EIF2 BETA | eukaryotic translation initia...   243   2e-65
AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translati...   243   2e-65
AT3G07920.1 | Symbols:  | Translation initiation factor IF2/IF5 ...   180   2e-46
AT5G01940.1 | Symbols:  | eukaryotic translation initiation fact...   124   2e-29
AT1G36730.1 | Symbols:  | Translation initiation factor IF2/IF5 ...    54   2e-08
AT1G77840.1 | Symbols:  | Translation initiation factor IF2/IF5 ...    54   3e-08

>AT5G20920.2 | Symbols: EIF2 BETA | eukaryotic translation
           initiation factor 2 beta subunit | chr5:7094994-7096661
           REVERSE LENGTH=267
          Length = 267

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/122 (93%), Positives = 116/122 (95%)

Query: 1   MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFA 60
           MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFA
Sbjct: 144 MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFA 203

Query: 61  PKNFEGILRRYINEYVICFGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVG 120
           PKNFEGILRRYI +YVIC GCKSPDTILSKENRLFFLRCEKCGS RSVAPIK GFVARV 
Sbjct: 204 PKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVS 263

Query: 121 RR 122
           RR
Sbjct: 264 RR 265


>AT5G20920.3 | Symbols: EIF2 BETA | eukaryotic translation
           initiation factor 2 beta subunit | chr5:7094994-7096661
           REVERSE LENGTH=268
          Length = 268

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/122 (93%), Positives = 116/122 (95%)

Query: 1   MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFA 60
           MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFA
Sbjct: 145 MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFA 204

Query: 61  PKNFEGILRRYINEYVICFGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVG 120
           PKNFEGILRRYI +YVIC GCKSPDTILSKENRLFFLRCEKCGS RSVAPIK GFVARV 
Sbjct: 205 PKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVS 264

Query: 121 RR 122
           RR
Sbjct: 265 RR 266


>AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translation
           initiation factor 2 beta subunit | chr5:7094994-7096661
           REVERSE LENGTH=268
          Length = 268

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/122 (93%), Positives = 116/122 (95%)

Query: 1   MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFA 60
           MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFA
Sbjct: 145 MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFA 204

Query: 61  PKNFEGILRRYINEYVICFGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVG 120
           PKNFEGILRRYI +YVIC GCKSPDTILSKENRLFFLRCEKCGS RSVAPIK GFVARV 
Sbjct: 205 PKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVS 264

Query: 121 RR 122
           RR
Sbjct: 265 RR 266


>AT3G07920.1 | Symbols:  | Translation initiation factor IF2/IF5 |
           chr3:2524787-2526229 REVERSE LENGTH=164
          Length = 164

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 98/124 (79%), Gaps = 8/124 (6%)

Query: 3   PPQVLRE----GTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGR 58
           PPQVLRE    GTKKTVFVNFMD CKTMHR PDHVMAFLLAELGT G LD QQRLVV+GR
Sbjct: 45  PPQVLREETAKGTKKTVFVNFMDYCKTMHRNPDHVMAFLLAELGTRGKLDDQQRLVVRGR 104

Query: 59  FAPKNFEGILRRYINEYVICFGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVAR 118
           F  ++FE +LR YI +YV+C  CKS + ILSKENRLFFLRC KCGSGR VAPIK  F   
Sbjct: 105 FTQRDFESLLRGYILDYVMCIPCKSTEAILSKENRLFFLRCGKCGSGRPVAPIKINF--- 161

Query: 119 VGRR 122
            GRR
Sbjct: 162 -GRR 164


>AT5G01940.1 | Symbols:  | eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein |
           chr5:363594-364769 REVERSE LENGTH=231
          Length = 231

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 88/130 (67%), Gaps = 9/130 (6%)

Query: 1   MRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFA 60
           M PPQ+L EGT  TV +NF DLC+TMHR+PDHVM FLLA++ T  SL+ QQRL +KG  +
Sbjct: 102 MMPPQLLAEGTI-TVCLNFADLCRTMHRKPDHVMKFLLAQMETKVSLNKQQRLEIKGLVS 160

Query: 61  PKNFEGILRRYINEYVICFGCKSPDTILSKE-NRLFFLRCE------KCGSGRSVAPIKA 113
            K+F+ + R+YI+ +VIC  CKSPDT L++E N LF LRCE      K  S  SV  ++ 
Sbjct: 161 SKDFQAVFRKYIDAFVICVCCKSPDTALAEEGNGLFNLRCETGKDEDKLVSFESVL-VQC 219

Query: 114 GFVARVGRRN 123
           G VA V   N
Sbjct: 220 GLVAPVDIPN 229


>AT1G36730.1 | Symbols:  | Translation initiation factor IF2/IF5 |
           chr1:13898706-13900025 REVERSE LENGTH=439
          Length = 439

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 13  KTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRL-VVKGRFAPKNFEGILRRY 71
           KT  VN +++ K + R   +   +   ELG     D +    +V G        G+L  +
Sbjct: 35  KTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENF 94

Query: 72  INEYVICFGCKSPDT-ILSKENRLFFLRCEKCG 103
           I +YV C+GC +P+T IL  + ++  L+C  CG
Sbjct: 95  IKKYVQCYGCGNPETEILITKTQMLQLKCAACG 127


>AT1G77840.1 | Symbols:  | Translation initiation factor IF2/IF5 |
           chr1:29269087-29270400 FORWARD LENGTH=437
          Length = 437

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 13  KTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRL-VVKGRFAPKNFEGILRRY 71
           KT  +N +++ K + R P +   +   ELG     D +    +V G        G+L  +
Sbjct: 35  KTNIINNVEIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENF 94

Query: 72  INEYVICFGCKSPDT-ILSKENRLFFLRCEKCG 103
           I ++V C+GC +P+T I+  + ++  L+C  CG
Sbjct: 95  IKKFVQCYGCGNPETEIIITKTQMVNLKCAACG 127