Miyakogusa Predicted Gene

Lj6g3v0328460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0328460.1 Non Chatacterized Hit- tr|F6HDU1|F6HDU1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.43,2e-16,seg,NULL,NODE_62634_length_1003_cov_60.294117.path2.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32960.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   193   1e-49
AT4G32970.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   165   3e-41

>AT4G32960.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins
           in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62;
           Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
           7 (source: NCBI BLink). | chr4:15908785-15910141 REVERSE
           LENGTH=264
          Length = 264

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 114/139 (82%), Gaps = 1/139 (0%)

Query: 16  YTLQPSRICNEDILFCIDIDPQSLVEMKTATGHNGRPLTRLDSIKQSILLFVHSKLTINP 75
           Y L+P RI +EDIL CID+D +S+VEMKT TG NGRPL R++ +KQ+I+LF+H+KL+INP
Sbjct: 16  YALKPGRIKSEDILICIDVDAESMVEMKT-TGTNGRPLIRMECVKQAIILFIHNKLSINP 74

Query: 76  DHRFAFATLSNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKKSR 135
           DHRFAFATL+ + +WLKK+F+SD ES +A++RGLS    S++ DLT LFR AA EAK SR
Sbjct: 75  DHRFAFATLAKSAAWLKKEFTSDAESAVASLRGLSGNKSSSRADLTLLFRAAAQEAKVSR 134

Query: 136 AQGRILRVILFYCRSNVRP 154
           AQ RI RVIL YCRS++RP
Sbjct: 135 AQNRIFRVILIYCRSSMRP 153


>AT4G32970.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins
           in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187;
           Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes
           - 110 (source: NCBI BLink). | chr4:15910671-15914300
           REVERSE LENGTH=638
          Length = 638

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 104/138 (75%), Gaps = 5/138 (3%)

Query: 17  TLQPSRICNEDILFCIDIDPQSLVEMKTATGHNGRPLTRLDSIKQSILLFVHSKLTINPD 76
           +++PS    EDIL C+D+D +S VEMKT TG NG+PL RL+ +K +I  F+H KL+ N D
Sbjct: 17  SVEPS----EDILICVDVDAESTVEMKT-TGTNGKPLNRLECLKLAITRFIHDKLSRNSD 71

Query: 77  HRFAFATLSNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKKSRA 136
           HRFAFATLS + +WLKK+FS+D +S  A++R +SAT  S   DLT LF+ AA EAK SRA
Sbjct: 72  HRFAFATLSQSAAWLKKEFSNDAKSAAASLREMSATRSSGPADLTFLFQEAAQEAKTSRA 131

Query: 137 QGRILRVILFYCRSNVRP 154
           Q RILRVIL YCRS+VRP
Sbjct: 132 QNRILRVILMYCRSSVRP 149