Miyakogusa Predicted Gene
- Lj6g3v0305070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0305070.1 Non Chatacterized Hit- tr|I1N3E7|I1N3E7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55804
PE,83.92,0,WD-REPEAT PROTEIN,NULL; WD40 REPEAT PROTEIN,NULL; WD40,WD40
repeat; WD_REPEATS_2,WD40 repeat;
WD_REP,NODE_52286_length_1794_cov_74.026756.path2.1
(429 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00090.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 592 e-169
AT4G32990.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 57 2e-08
AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 56 5e-08
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 56 5e-08
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 56 5e-08
AT1G15440.1 | Symbols: PWP2, ATPWP2 | periodic tryptophan protei... 54 3e-07
AT1G15440.2 | Symbols: PWP2 | periodic tryptophan protein 2 | ch... 54 3e-07
AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:867... 49 5e-06
>AT4G00090.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:34234-36594 FORWARD LENGTH=430
Length = 430
Score = 592 bits (1525), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/408 (69%), Positives = 326/408 (79%), Gaps = 9/408 (2%)
Query: 22 FFNSYFRHRQSEVRSIANPDPKSVF-----NRFXXXXXXXXXXXXXXDQIKRHHPLDLNT 76
FF SYFR R SEV+S+A +P+ N +Q KRHHPLDLNT
Sbjct: 22 FFGSYFRKRTSEVQSMAKAEPQDPIRNPKSNHPAPKKNHPKSQASDKNQNKRHHPLDLNT 81
Query: 77 LKGHGDAVTGICFSPDGQNLATACADGIVRVFKLDDASSKSFRFLRINLPPGGHPXXXXX 136
LKGHGDAVTG+CFS DG++LATACADG++RVFKLDDASSKSF+FLRINLP GGHP
Sbjct: 82 LKGHGDAVTGLCFSSDGKSLATACADGVIRVFKLDDASSKSFKFLRINLPAGGHPTAVAF 141
Query: 137 XXXXXXXXXXXHTLSGCSLYMYGEEKPKTSDSKTQPKLPLPEIKWERHKVHDKKAILTLF 196
H +SG SLYMYGE+K K Q KLPLP IKW+ H +H+K+++LT+
Sbjct: 142 ADDASSIVVACHHMSGSSLYMYGEDKQKDQ----QGKLPLPSIKWDHHHIHEKRSVLTIS 197
Query: 197 GTSATYGSADGSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAA 256
G +ATYG+ADGS +IASCSEGTDI+LWHGKTG+++GHVDTNQLKN+MAA+SPNGRF+AAA
Sbjct: 198 GATATYGTADGSVVIASCSEGTDIVLWHGKTGRNLGHVDTNQLKNHMAAVSPNGRFLAAA 257
Query: 257 AFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWN 316
AFTADVKVWEIVY KDGSVKEVS MQLKGHKSAVTWLCF+PNSEQ+ITASKDGS+RVWN
Sbjct: 258 AFTADVKVWEIVYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN 317
Query: 317 INVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAATHGSTLQWLCLETGK 376
INVRYHLDEDPKTLKVFPIPL DS G LHYDRLS+ P+GKI+AA+HGSTLQWLC ETG
Sbjct: 318 INVRYHLDEDPKTLKVFPIPLCDSGGNPLHYDRLSLCPEGKILAASHGSTLQWLCAETGN 377
Query: 377 VLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLWAAP 424
VLDTAEKAH+GDITCISWAPK I +G++ +VL T+ DKKVKLW AP
Sbjct: 378 VLDTAEKAHEGDITCISWAPKAITVGERHAMVLGTSGDDKKVKLWEAP 425
>AT4G32990.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:15920230-15922658 FORWARD LENGTH=328
Length = 328
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 243 MAAISPNGRFIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLK-GHKSAVTWLCFTPNSE 301
M P + + ++ +K+W +DG V + +L GH S V + F +
Sbjct: 144 MVLWHPTMDVLFSCSYDNTIKIW-CSEDEDGDYNCVQTLSELNNGHSSTVWSISFNAAGD 202
Query: 302 QVITASKDGSLRVWNINV-RYHLDED--PKTLKVFPIPLHDSNGTTLHYDRLSISPDGKI 358
+++T S D ++++W ++ R E P T HD ++H+ R DG I
Sbjct: 203 KMVTCSDDLAVKIWKTDISRMQSGEGYVPWTHVCTLSGFHDRTIYSVHWSR-----DGVI 257
Query: 359 MAATHGSTLQWLCLETG---------KVLDTAEKAHDGDITCISWAPKTIPMGDKPILVL 409
+ T+Q L +++ K+L EKAH+ D+ + WAP DK +L
Sbjct: 258 ASGAGDDTIQ-LFVDSDSDSVDGPSYKLLVKKEKAHEMDVNSVQWAP------DKESRLL 310
Query: 410 ATASADKKVKLWAAPSH 426
A+AS DK VK+W S
Sbjct: 311 ASASDDKMVKIWKLASE 327
>AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=836
Length = 836
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 32/171 (18%)
Query: 252 FIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGS 311
+AA A + +K+W++ AK L GH+S + F P E + S D +
Sbjct: 73 LVAAGAASGTIKLWDLEEAK--------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTN 124
Query: 312 LRVWNINVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGK-IMAATHGSTLQWL 370
L++W+I + + H G T + L +PDG+ +++ + ++
Sbjct: 125 LKIWDIRKKGCI--------------HTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVW 170
Query: 371 CLETGKVLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
L GK+L T K+H+G I + + P +LAT SAD+ VK W
Sbjct: 171 DLTAGKLL-TEFKSHEGQIQSLDFHPHE--------FLLATGSADRTVKFW 212
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 182 ERHKVH-----DKKAILTLFGTSATYGSA--DGSTII--ASCSEGTDIILWHGKTGKSVG 232
E HKV+ AIL+L+G S+ S D S ++ A + GT I LW + K V
Sbjct: 37 EDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGT-IKLWDLEEAKIVR 95
Query: 233 HVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVT 292
+ ++ P G F A+ + ++K+W+I K G + KGH V
Sbjct: 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI--RKKGCIH------TYKGHTRGVN 147
Query: 293 WLCFTPNSEQVITASKDGSLRVWNINVRYHLDE 325
L FTP+ V++ +D ++VW++ L E
Sbjct: 148 VLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTE 180
>AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=837
Length = 837
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 32/171 (18%)
Query: 252 FIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGS 311
+AA A + +K+W++ AK L GH+S + F P E + S D +
Sbjct: 73 LVAAGAASGTIKLWDLEEAK--------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTN 124
Query: 312 LRVWNINVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGK-IMAATHGSTLQWL 370
L++W+I + + H G T + L +PDG+ +++ + ++
Sbjct: 125 LKIWDIRKKGCI--------------HTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVW 170
Query: 371 CLETGKVLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
L GK+L T K+H+G I + + P +LAT SAD+ VK W
Sbjct: 171 DLTAGKLL-TEFKSHEGQIQSLDFHPHE--------FLLATGSADRTVKFW 212
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 182 ERHKVH-----DKKAILTLFGTSATYGSA--DGSTII--ASCSEGTDIILWHGKTGKSVG 232
E HKV+ AIL+L+G S+ S D S ++ A + GT I LW + K V
Sbjct: 37 EDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGT-IKLWDLEEAKIVR 95
Query: 233 HVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVT 292
+ ++ P G F A+ + ++K+W+I K G + KGH V
Sbjct: 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI--RKKGCIH------TYKGHTRGVN 147
Query: 293 WLCFTPNSEQVITASKDGSLRVWNINVRYHLDE 325
L FTP+ V++ +D ++VW++ L E
Sbjct: 148 VLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTE 180
>AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701448-2706910 FORWARD LENGTH=839
Length = 839
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 32/171 (18%)
Query: 252 FIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGS 311
+AA A + +K+W++ AK L GH+S + F P E + S D +
Sbjct: 73 LVAAGAASGTIKLWDLEEAK--------VVRTLTGHRSNCVSVNFHPFGEFFASGSLDTN 124
Query: 312 LRVWNINVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGK-IMAATHGSTLQWL 370
L++W+I + + H G T + L +PDG+ I++ + ++
Sbjct: 125 LKIWDIRKKGCI--------------HTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVW 170
Query: 371 CLETGKVLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
L GK+L K+H+G I + + P +LAT SADK VK W
Sbjct: 171 DLTAGKLLHEF-KSHEGKIQSLDFHPHE--------FLLATGSADKTVKFW 212
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 182 ERHKVH-----DKKAILTLFG-----TSATYGSADGSTIIASCSEGTDIILWHGKTGKSV 231
E HKV+ AIL+L+G S T+ +++G + A + GT I LW + K V
Sbjct: 37 EDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEG-LVAAGAASGT-IKLWDLEEAKVV 94
Query: 232 GHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAV 291
+ ++ P G F A+ + ++K+W+I K G + KGH V
Sbjct: 95 RTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDI--RKKGCIH------TYKGHTRGV 146
Query: 292 TWLCFTPNSEQVITASKDGSLRVWNINVRYHLDE 325
L FTP+ +++ +D ++VW++ L E
Sbjct: 147 NVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHE 180
>AT1G15440.1 | Symbols: PWP2, ATPWP2 | periodic tryptophan protein 2
| chr1:5306159-5309460 REVERSE LENGTH=900
Length = 900
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 207 GSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWE 266
G+ + C++ +++W +T + + N SP+ + +A A VKVW
Sbjct: 358 GNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 417
Query: 267 IVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVRYHLDED 326
++ + + H +AVT L F ++ +++AS DG++R W+ RY
Sbjct: 418 VMSG--------TCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFK-RY----- 463
Query: 327 PKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAATHGSTLQWLCL--ETGKVLDTAEKA 384
K K + P T + L+ P G ++ A + + +TG++ D
Sbjct: 464 -KNYKTYTTP------TPRQFVSLTADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILS-G 515
Query: 385 HDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
H+ + + ++P T +LA++S D V+LW
Sbjct: 516 HEAPVHGLMFSPLT--------QLLASSSWDYTVRLW 544
>AT1G15440.2 | Symbols: PWP2 | periodic tryptophan protein 2 |
chr1:5306159-5309460 REVERSE LENGTH=860
Length = 860
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 207 GSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAAISPNGRFIAAAAFTADVKVWE 266
G+ + C++ +++W +T + + N SP+ + +A A VKVW
Sbjct: 318 GNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 377
Query: 267 IVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVITASKDGSLRVWNINVRYHLDED 326
++ + + H +AVT L F ++ +++AS DG++R W+ RY
Sbjct: 378 VMSG--------TCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFK-RY----- 423
Query: 327 PKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAATHGSTLQWLCL--ETGKVLDTAEKA 384
K K + P T + L+ P G ++ A + + +TG++ D
Sbjct: 424 -KNYKTYTTP------TPRQFVSLTADPSGDVVCAGTLDSFEIFVWSKKTGQIKDIL-SG 475
Query: 385 HDGDITCISWAPKTIPMGDKPILVLATASADKKVKLW 421
H+ + + ++P T +LA++S D V+LW
Sbjct: 476 HEAPVHGLMFSPLT--------QLLASSSWDYTVRLW 504
>AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 |
chr5:8677117-8682058 FORWARD LENGTH=669
Length = 669
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 37/242 (15%)
Query: 189 KKAILTLFGTSATYGSADGS---TIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMAA 245
+++ L G S SA S + S S T I LW K ++ + A
Sbjct: 408 RRSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQ 467
Query: 246 ISPNGRFIAAAAFTADVKVWEIVYAKDGSVKEVSSAMQLKGHKSAVTWLCFTPNSEQVIT 305
SP G + A+ + ++W S+ + + GH S V + + PN + T
Sbjct: 468 FSPFGHYFASCSHDRTARIW--------SMDRIQPLRIMAGHLSDVDCVQWHPNCNYIAT 519
Query: 306 ASKDGSLRVWNINVRYHLDEDPKTLKVFPIPLHDSNGTTLHYDRLSISPDGKIMAA--TH 363
S D ++R+W++ + + +++F G L++SPDG+ MA+
Sbjct: 520 GSSDKTVRLWDV-------QTGECVRIFI-------GHRSMVLSLAMSPDGRYMASGDED 565
Query: 364 GSTLQWLCLETGKVLDTAEKAHDGDITCISWAPKTIPMGDKPILVLATASADKKVKLWAA 423
G+ + W L T + + T H+ + +S++ G+ + LA+ SAD VKLW
Sbjct: 566 GTIMMW-DLSTARCI-TPLMGHNSCVWSLSYS------GEGSL--LASGSADCTVKLWDV 615
Query: 424 PS 425
S
Sbjct: 616 TS 617