Miyakogusa Predicted Gene

Lj6g3v0258710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0258710.1 Non Chatacterized Hit- tr|C5YBT8|C5YBT8_SORBI
Putative uncharacterized protein Sb06g001220 OS=Sorghu,36.94,4e-19,no
description,NULL; seg,NULL,CUFF.57671.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13870.1 | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner syn...    99   1e-21
AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease...    99   1e-21

>AT4G13870.1 | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner
           syndrome-like exonuclease | chr4:8023563-8025542 REVERSE
           LENGTH=285
          Length = 285

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 9/113 (7%)

Query: 68  QLPTLSPSHSQGYSRMRL--------PVMKFSGQITYSRSFDDVQKAVTKLLEFVEEKKR 119
           QLP  S + S  Y R  L        P M+F G+I YS++  +V K   +L++ ++ K+ 
Sbjct: 65  QLPR-SITSSTSYKRFPLSRCRARNFPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKRD 123

Query: 120 AMMRIAIGFDIEWRPSFVRGVPPGKVAVMQICGDTSHCHVLHLIHSGIPQNLQ 172
                 +G DIEWRPSF +GV PGKVA +QIC D+++C V+H+ HSGIPQ+LQ
Sbjct: 124 ESGIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSGIPQSLQ 176


>AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease |
           chr4:8023563-8025542 REVERSE LENGTH=288
          Length = 288

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 9/113 (7%)

Query: 68  QLPTLSPSHSQGYSRMRL--------PVMKFSGQITYSRSFDDVQKAVTKLLEFVEEKKR 119
           QLP  S + S  Y R  L        P M+F G+I YS++  +V K   +L++ ++ K+ 
Sbjct: 65  QLPR-SITSSTSYKRFPLSRCRARNFPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKRD 123

Query: 120 AMMRIAIGFDIEWRPSFVRGVPPGKVAVMQICGDTSHCHVLHLIHSGIPQNLQ 172
                 +G DIEWRPSF +GV PGKVA +QIC D+++C V+H+ HSGIPQ+LQ
Sbjct: 124 ESGIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSGIPQSLQ 176