Miyakogusa Predicted Gene

Lj6g3v0248690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0248690.1 Non Chatacterized Hit- tr|I1MYA5|I1MYA5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48381
PE,79.86,0,coiled-coil,NULL; AAA_23,NULL; no description,NULL;
RAD50,NULL; P-loop containing nucleoside triphos,CUFF.57684.1
         (561 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31970.1 | Symbols: RAD50, ATRAD50 | DNA repair-recombination...   813   0.0  

>AT2G31970.1 | Symbols: RAD50, ATRAD50 | DNA repair-recombination
           protein (RAD50) | chr2:13600657-13608815 FORWARD
           LENGTH=1316
          Length = 1316

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/561 (70%), Positives = 460/561 (81%)

Query: 1   MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR 60
           MSTVDKMLIKGIRSFDPENKNV+TFF+PLTLIVG NGAGKTTIIECLK+SCTGELPPNAR
Sbjct: 1   MSTVDKMLIKGIRSFDPENKNVVTFFRPLTLIVGANGAGKTTIIECLKVSCTGELPPNAR 60

Query: 61  SGHSFIHDPKVAGETETKGQIKLRFKTPAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI 120
           SGHSFIHDPKVAGETETK QIKLRFKT AGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
Sbjct: 61  SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI 120

Query: 121 NPHSGEKVCLSYRCANMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI 180
           NPH+GEKVCLSYRCA+MD+EIPALMGVSKAILENVIFVHQDE+NWPLQDPSTLKKKFDDI
Sbjct: 121 NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI 180

Query: 181 FSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAQDQEKMEALKS 240
           FSATRYTKALEVIKKLHK+QAQEIKT+KLKLE+LQTLKDAAYKLRESIAQDQE+ E+ K 
Sbjct: 181 FSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESIAQDQERTESSKV 240

Query: 241 QVQQLDGGIQDLDAKIDHAEKTFKDLRRLQEQISTKTAQRSVLFKEQQKQYSALXXXXXX 300
           Q+ +L+  +Q +DA++ + E   KDLR+LQ+Q+S KTA+RS LFKEQQ+QY+AL      
Sbjct: 241 QMLELETSVQKVDAEVHNKEMMLKDLRKLQDQVSIKTAERSTLFKEQQRQYAALPEENED 300

Query: 301 XXXXXXXWKTKFSEMIAMLETKITKLEREMEDIDTKSSFLQKQIDNSNWEMGKLQTEAKA 360
                  WK+KF E +A+L TKI K+EREM D +T  S L     N   E+ KLQTEA+A
Sbjct: 301 TIEELKEWKSKFEERLALLGTKIRKMEREMVDTETTISSLHNAKTNYMLEISKLQTEAEA 360

Query: 361 HMSLKNERDSSIQNLFARYSLGSLPKSPFSDEVALNLTSRVKSRLGXXXXXXXXXXXAIN 420
           HM LKNERDS+IQN+F  Y+LG++P +PFS EV LNLT+R+KSRLG           +  
Sbjct: 361 HMLLKNERDSTIQNIFFHYNLGNVPSTPFSTEVVLNLTNRIKSRLGELEMDLLDKKKSNE 420

Query: 421 NELKNAWDCYMEANDCWKNVDATKQAKIEIKSGKLKSIEEKTKERDSFELQISNVNFSLI 480
             L  AWDCYM+AND WK+++A K+AK EIK G  K IEEK  ERDSFE +IS V+    
Sbjct: 421 TALSTAWDCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKEIERDSFEFEISTVDVKQT 480

Query: 481 DERERNLHIEVERKTKQLSEREFEPNIRHMQSELYSVDQKIKGVNREKDIMASDSEDRVK 540
           DERE+ + +E+ERKTKQ SER FE  I   Q E+YS++ KIK +NRE+D+MA D+EDRVK
Sbjct: 481 DEREKQVQVELERKTKQNSERGFESKIEQKQHEIYSLEHKIKTLNRERDVMAGDAEDRVK 540

Query: 541 LSLKKTELENQKKKYKKIIDD 561
           LSLKKTE EN KKK+KKIID+
Sbjct: 541 LSLKKTEQENLKKKHKKIIDE 561