Miyakogusa Predicted Gene

Lj6g3v0247680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0247680.1 tr|G7JAR7|G7JAR7_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=3
S,91.85,0,no description,Pyridoxal phosphate-dependent transferase,
major region, subdomain 1; SHMT,Serine hyd,CUFF.57679.1
         (272 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 ...   442   e-124
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate ...   396   e-111
AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 ...   347   6e-96
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 ...   333   6e-92
AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 ...   318   3e-87
AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine hydroxymethyltrans...   318   3e-87
AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymet...   317   7e-87
AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ...   305   2e-83
AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ...   305   2e-83
AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ...   305   2e-83

>AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 |
           chr4:8048013-8050021 REVERSE LENGTH=471
          Length = 471

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/232 (89%), Positives = 220/232 (94%)

Query: 1   MDPVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYS 60
           M+PV+ WGNT L +VDPEIHDLIE EKRRQCRGIELIASENFTSFAVI+ALGSALTNKYS
Sbjct: 1   MEPVSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60

Query: 61  EGMPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQP 120
           EG+PGNRYYGGNEFID+IENLCRSRAL+AFH D AAWGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61  EGIPGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQP 120

Query: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDF 180
           HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNF+TGYIDYD+LEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDF 180

Query: 181 RPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
           RPKL+ICGGSAYPRDWDYARFR +ADK GALLLCDMAHISGLVAAQ  +  F
Sbjct: 181 RPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPF 232


>AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate
           (PLP)-dependent transferases superfamily protein |
           chr4:8032146-8033718 REVERSE LENGTH=470
          Length = 470

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/232 (79%), Positives = 206/232 (88%)

Query: 1   MDPVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYS 60
           M+PV  WGNT L  VDPEI+DLIE EK RQCRGIELIA+ENFTS AV++ALGS LTNKYS
Sbjct: 1   MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYS 60

Query: 61  EGMPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQP 120
           EGMPGNRYYGG EFID+IE+LCRSR+L+AFH +   WGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61  EGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQP 120

Query: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDF 180
           HDRIMGLDLPSGGH+THGYY+SGGK ISATSIYFE+LPYKV+  TGYIDYD+LEEKA+DF
Sbjct: 121 HDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDF 180

Query: 181 RPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
           RPKLIICGG++YPR+WDYARFR VADK GA LLCDMAH S LVAAQ  +  F
Sbjct: 181 RPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPF 232


>AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 |
           chr1:13696240-13698576 REVERSE LENGTH=598
          Length = 598

 Score =  347 bits (889), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 190/229 (82%)

Query: 4   VNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGM 63
           V  WG+ P+   DP+IH+L+E EK+RQ RGIELIASENF   AV++ALGS LTNKYSEGM
Sbjct: 130 VRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLTNKYSEGM 189

Query: 64  PGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDR 123
           PG RYY GN++IDQIENLC  RAL AF L++  WGVNVQPYS + ANFA YT +L P +R
Sbjct: 190 PGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTGLLLPGER 249

Query: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPK 183
           IMGLD PSGGH++HGY T GGKKISA SI+FES PYKVN  TGYIDYD+LE+KALD+RPK
Sbjct: 250 IMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDKALDYRPK 309

Query: 184 LIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
           ++ICGGS+YPRDWD+AR RQ+ADKCGA+L+CDMAHISGLVA +  S  F
Sbjct: 310 ILICGGSSYPRDWDFARVRQIADKCGAVLMCDMAHISGLVATKECSNPF 358


>AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 |
           chr1:7754599-7757087 FORWARD LENGTH=599
          Length = 599

 Score =  333 bits (855), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 183/223 (82%)

Query: 4   VNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGM 63
           V  WGN  +   DPEIH+ +E EK+RQ RGIELIASENF   AV++ALGS LTNKYSEGM
Sbjct: 134 VRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGM 193

Query: 64  PGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDR 123
           PG RYY GN++IDQIE LC+ RAL AF L+   WGVNVQPYS + ANFA +T +L P +R
Sbjct: 194 PGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGER 253

Query: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPK 183
           IMGLD PSGGH++HGYYT GGKK+S  SI+FES PYKV+  TGYIDYD+LEEKALD+RPK
Sbjct: 254 IMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEKALDYRPK 313

Query: 184 LIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQ 226
           ++ICGGS+YPRDW++ RFR +ADKCGA+L+ DMA ISGLVAA+
Sbjct: 314 ILICGGSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAK 356


>AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 |
           chr4:15689642-15692334 REVERSE LENGTH=529
          Length = 529

 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 181/230 (78%), Gaps = 4/230 (1%)

Query: 3   PVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEG 62
           P  D+G   L  VDPE+  +I  EK RQ R +ELIASENFTS AV++A+GS LTNKYSEG
Sbjct: 77  PFEDYG---LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEG 133

Query: 63  MPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHD 122
           +PG RYYGGNE+IDQ+E LC++RAL AF LD+  WGVNVQP SGSPANFA YTA+L PHD
Sbjct: 134 LPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHD 193

Query: 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRP 182
           RIMGLDLP GGHL+HG+ T+  +++S TSIYFES+PY+++ STG +DYD LE+ A  FRP
Sbjct: 194 RIMGLDLPHGGHLSHGFMTA-KRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRP 252

Query: 183 KLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
           KLII G SAY RD+DY R R++AD  GA L+ DMAHISGLVAA V +  F
Sbjct: 253 KLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPF 302


>AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine
           hydroxymethyltransferase 3 | chr4:15689642-15692334
           REVERSE LENGTH=529
          Length = 529

 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 181/230 (78%), Gaps = 4/230 (1%)

Query: 3   PVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEG 62
           P  D+G   L  VDPE+  +I  EK RQ R +ELIASENFTS AV++A+GS LTNKYSEG
Sbjct: 77  PFEDYG---LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEG 133

Query: 63  MPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHD 122
           +PG RYYGGNE+IDQ+E LC++RAL AF LD+  WGVNVQP SGSPANFA YTA+L PHD
Sbjct: 134 LPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHD 193

Query: 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRP 182
           RIMGLDLP GGHL+HG+ T+  +++S TSIYFES+PY+++ STG +DYD LE+ A  FRP
Sbjct: 194 RIMGLDLPHGGHLSHGFMTA-KRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRP 252

Query: 183 KLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
           KLII G SAY RD+DY R R++AD  GA L+ DMAHISGLVAA V +  F
Sbjct: 253 KLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPF 302


>AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine
           transhydroxymethyltransferase 1 | chr4:17831891-17834742
           REVERSE LENGTH=517
          Length = 517

 Score =  317 bits (811), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 148/224 (66%), Positives = 177/224 (79%), Gaps = 1/224 (0%)

Query: 9   NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
           N PL  VDPEI D+IEHEK RQ +G+ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52  NAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 111

Query: 69  YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
           YGGNE+ID  E LC+ RAL+AF LD   WGVNVQP SGSPANF  YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALD 171

Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
           LP GGHL+HGY T   KKISA SI+FE++PY+++ STGYIDYD++E+ A  FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAG 230

Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
            SAY R +DYAR R+V +K  A++L DMAHISGLVAA V    F
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPF 274


>AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
           chr5:9418299-9421725 FORWARD LENGTH=533
          Length = 533

 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 175/224 (78%), Gaps = 1/224 (0%)

Query: 9   NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
           N  L  +DPE+ D+IE EK RQ +G ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52  NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111

Query: 69  YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
           YGGNE+ID  E LC+ RAL+AF LD + WGVNVQ  SGSPANF  YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171

Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
           LP GGHL+HGY T   KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230

Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
            SAY R +DYAR R+V +K  A++L DMAHISGLVAA V    F
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPF 274


>AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
           chr5:9418299-9421725 FORWARD LENGTH=533
          Length = 533

 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 175/224 (78%), Gaps = 1/224 (0%)

Query: 9   NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
           N  L  +DPE+ D+IE EK RQ +G ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52  NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111

Query: 69  YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
           YGGNE+ID  E LC+ RAL+AF LD + WGVNVQ  SGSPANF  YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171

Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
           LP GGHL+HGY T   KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230

Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
            SAY R +DYAR R+V +K  A++L DMAHISGLVAA V    F
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPF 274


>AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
           chr5:9418299-9421725 FORWARD LENGTH=517
          Length = 517

 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 175/224 (78%), Gaps = 1/224 (0%)

Query: 9   NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
           N  L  +DPE+ D+IE EK RQ +G ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52  NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111

Query: 69  YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
           YGGNE+ID  E LC+ RAL+AF LD + WGVNVQ  SGSPANF  YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171

Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
           LP GGHL+HGY T   KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230

Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQVPSCQF 232
            SAY R +DYAR R+V +K  A++L DMAHISGLVAA V    F
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPF 274