Miyakogusa Predicted Gene
- Lj6g3v0247670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0247670.1 tr|G7JAR7|G7JAR7_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=3
S,94.48,0,no description,Pyridoxal phosphate-dependent transferase,
major region, subdomain 1; no description,,CUFF.57678.1
(471 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 ... 871 0.0
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate ... 772 0.0
AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 ... 620 e-178
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 ... 610 e-175
AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 ... 566 e-161
AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine hydroxymethyltrans... 566 e-161
AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymet... 561 e-160
AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ... 541 e-154
AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ... 531 e-151
AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ... 531 e-151
>AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 |
chr4:8048013-8050021 REVERSE LENGTH=471
Length = 471
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/471 (87%), Positives = 441/471 (93%)
Query: 1 MDPVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYS 60
M+PV+ WGNT L +VDPEIHDLIE EKRRQCRGIELIASENFTSFAVI+ALGSALTNKYS
Sbjct: 1 MEPVSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 61 EGMPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQP 120
EG+PGNRYYGGNEFID+IENLCRSRAL+AFH D AAWGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61 EGIPGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQP 120
Query: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDF 180
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNF+TGYIDYD+LEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDF 180
Query: 181 RPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTT 240
RPKL+ICGGSAYPRDWDYARFR +ADK GALLLCDMAHISGLVAAQEA NPFEYCD+VTT
Sbjct: 181 RPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTT 240
Query: 241 TTHKSLRGPRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALA 300
TTHKSLRGPRAGMIFYR E A YDFEDKINFAVFP+LQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALA 300
Query: 301 VALKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKV 360
VALKQA TPGFK YAKQVKANAVA+GNYLMSKGY +VT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQANTPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKV 360
Query: 361 EKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTL 420
EKLCDLC+IT+NKNAVFGDSSALAPGGVR+GAPAMTSRGLVEKDFEQIGEFL RAV+LTL
Sbjct: 361 EKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTL 420
Query: 421 EIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSELKYKD 471
+IQ YGKLLKDFNKGLVNNK +++LKADVEKFSAS++MPGFL+SE+KYKD
Sbjct: 421 DIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
>AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate
(PLP)-dependent transferases superfamily protein |
chr4:8032146-8033718 REVERSE LENGTH=470
Length = 470
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/466 (76%), Positives = 410/466 (87%)
Query: 1 MDPVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYS 60
M+PV WGNT L VDPEI+DLIE EK RQCRGIELIA+ENFTS AV++ALGS LTNKYS
Sbjct: 1 MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYS 60
Query: 61 EGMPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQP 120
EGMPGNRYYGG EFID+IE+LCRSR+L+AFH + WGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61 EGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQP 120
Query: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDF 180
HDRIMGLDLPSGGH+THGYY+SGGK ISATSIYFE+LPYKV+ TGYIDYD+LEEKA+DF
Sbjct: 121 HDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDF 180
Query: 181 RPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTT 240
RPKLIICGG++YPR+WDYARFR VADK GA LLCDMAH S LVAAQEA +PFEYCD+VTT
Sbjct: 181 RPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTT 240
Query: 241 TTHKSLRGPRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALA 300
+THKSLRGPRAGMIFYR E YDF+ KIN AVFP+LQ GPHN++IGALA
Sbjct: 241 STHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALA 300
Query: 301 VALKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKV 360
VALKQ M P FK YAKQVKANA + +YL++KGY+LVT GT+NHL+LWDLRPLGLTGNKV
Sbjct: 301 VALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKV 360
Query: 361 EKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTL 420
EK+C+LC IT+N+NAVFGD+S LAPGGVR+G PAMTSRGLVEKDFE+IGEFLHRAV++TL
Sbjct: 361 EKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITL 420
Query: 421 EIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSE 466
+IQ +YGK++KDFNKGLVNNK I+E+KADVE+F+ FDMPGF +SE
Sbjct: 421 DIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISE 466
>AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 |
chr1:13696240-13698576 REVERSE LENGTH=598
Length = 598
Score = 620 bits (1600), Expect = e-178, Method: Compositional matrix adjust.
Identities = 289/466 (62%), Positives = 360/466 (77%), Gaps = 5/466 (1%)
Query: 4 VNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGM 63
V WG+ P+ DP+IH+L+E EK+RQ RGIELIASENF AV++ALGS LTNKYSEGM
Sbjct: 130 VRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLTNKYSEGM 189
Query: 64 PGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDR 123
PG RYY GN++IDQIENLC RAL AF L++ WGVNVQPYS + ANFA YT +L P +R
Sbjct: 190 PGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTGLLLPGER 249
Query: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPK 183
IMGLD PSGGH++HGY T GGKKISA SI+FES PYKVN TGYIDYD+LE+KALD+RPK
Sbjct: 250 IMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDKALDYRPK 309
Query: 184 LIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTH 243
++ICGGS+YPRDWD+AR RQ+ADKCGA+L+CDMAHISGLVA +E +NPF++CDIVT+TTH
Sbjct: 310 ILICGGSSYPRDWDFARVRQIADKCGAVLMCDMAHISGLVATKECSNPFDHCDIVTSTTH 369
Query: 244 KSLRGPRAGMIFYR-----XXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGA 298
K LRGPR G+IFYR + YD E+KINFAVFPSLQGGPHN+ I A
Sbjct: 370 KGLRGPRGGIIFYRRGPKIRKQGHHSSHCDTSTHYDLEEKINFAVFPSLQGGPHNNHIAA 429
Query: 299 LAVALKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGN 358
LA+ALKQ TP +KAY +Q+K NA A+ L+ + LVTGGT+NHL+LWDL P+GLTG
Sbjct: 430 LAIALKQVATPEYKAYIQQMKKNAQALAAALLRRKCRLVTGGTDNHLLLWDLTPMGLTGK 489
Query: 359 KVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSL 418
EK+C++C+IT+NK A+FGD+ ++PGGVR+G PAMT+RG +E DFE + +FL +A +
Sbjct: 490 VYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQI 549
Query: 419 TLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLV 464
T +Q E+GK K+F K L NK I EL+ VE F+ ++MP L+
Sbjct: 550 TSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMPASLI 595
>AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 |
chr1:7754599-7757087 FORWARD LENGTH=599
Length = 599
Score = 610 bits (1572), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/464 (60%), Positives = 356/464 (76%), Gaps = 5/464 (1%)
Query: 4 VNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGM 63
V WGN + DPEIH+ +E EK+RQ RGIELIASENF AV++ALGS LTNKYSEGM
Sbjct: 134 VRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGM 193
Query: 64 PGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDR 123
PG RYY GN++IDQIE LC+ RAL AF L+ WGVNVQPYS + ANFA +T +L P +R
Sbjct: 194 PGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGER 253
Query: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPK 183
IMGLD PSGGH++HGYYT GGKK+S SI+FES PYKV+ TGYIDYD+LEEKALD+RPK
Sbjct: 254 IMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEKALDYRPK 313
Query: 184 LIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTH 243
++ICGGS+YPRDW++ RFR +ADKCGA+L+ DMA ISGLVAA+E+ NPF+YCDIVT+TTH
Sbjct: 314 ILICGGSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAKESPNPFDYCDIVTSTTH 373
Query: 244 KSLRGPRAGMIFYRXXXXXXXXXX-----XENAGYDFEDKINFAVFPSLQGGPHNHQIGA 298
KSLRGPR G+IFY+ N YDFE+KINF+VFPSLQGGPHN+ I A
Sbjct: 374 KSLRGPRGGIIFYKRGLKPKKQSINLNHCESNIQYDFEEKINFSVFPSLQGGPHNNHIAA 433
Query: 299 LAVALKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGN 358
LA+ALKQA +P +K Y +QVK NA A+ + L+S+ L+TGGT+NHL+LWDL PLGLTG
Sbjct: 434 LAIALKQAASPEYKLYMRQVKKNAKALASALISRKCKLITGGTDNHLLLWDLTPLGLTGK 493
Query: 359 KVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSL 418
EK+C++C+ITVNK A+F ++ ++PGGVR+G+PAMTSRG +E +FE + +FL+RA +
Sbjct: 494 VYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYRAAQI 553
Query: 419 TLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGF 462
Q E+GKL K+ K + + K I +L+ VE F+ F MP F
Sbjct: 554 ASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAF 597
>AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 |
chr4:15689642-15692334 REVERSE LENGTH=529
Length = 529
Score = 566 bits (1459), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/465 (58%), Positives = 342/465 (73%), Gaps = 19/465 (4%)
Query: 3 PVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEG 62
P D+G L VDPE+ +I EK RQ R +ELIASENFTS AV++A+GS LTNKYSEG
Sbjct: 77 PFEDYG---LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
Query: 63 MPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHD 122
+PG RYYGGNE+IDQ+E LC++RAL AF LD+ WGVNVQP SGSPANFA YTA+L PHD
Sbjct: 134 LPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHD 193
Query: 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRP 182
RIMGLDLP GGHL+HG+ T+ +++S TSIYFES+PY+++ STG +DYD LE+ A FRP
Sbjct: 194 RIMGLDLPHGGHLSHGFMTA-KRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRP 252
Query: 183 KLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTT 242
KLII G SAY RD+DY R R++AD GA L+ DMAHISGLVAA +PFEYCDIVTTTT
Sbjct: 253 KLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTT 312
Query: 243 HKSLRGPRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALAVA 302
HKSLRGPR GMIF+R G D E +N AVFP LQGGPHNH IG LAV
Sbjct: 313 HKSLRGPRGGMIFFRKDPIN---------GVDLESAVNNAVFPGLQGGPHNHTIGGLAVC 363
Query: 303 LKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEK 362
LK A +P FKAY K+V +N A+ N L+ G+ LV+GG++NHLVL DLRP+G+ G +VEK
Sbjct: 364 LKHAQSPEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEK 423
Query: 363 LCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTLEI 422
+ D+ +IT+NKN+V GD SAL PGG+R+G+PAMT+RGL EKDF + +F+ V +T+E
Sbjct: 424 ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEA 483
Query: 423 QNEY-GKLLKDFNKGLVN-----NKAIEELKADVEKFSASFDMPG 461
+ G L+DFNK + + + ++ LK VE F++ F +PG
Sbjct: 484 KKAAPGSKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPG 528
>AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine
hydroxymethyltransferase 3 | chr4:15689642-15692334
REVERSE LENGTH=529
Length = 529
Score = 566 bits (1459), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/465 (58%), Positives = 342/465 (73%), Gaps = 19/465 (4%)
Query: 3 PVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEG 62
P D+G L VDPE+ +I EK RQ R +ELIASENFTS AV++A+GS LTNKYSEG
Sbjct: 77 PFEDYG---LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
Query: 63 MPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHD 122
+PG RYYGGNE+IDQ+E LC++RAL AF LD+ WGVNVQP SGSPANFA YTA+L PHD
Sbjct: 134 LPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHD 193
Query: 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRP 182
RIMGLDLP GGHL+HG+ T+ +++S TSIYFES+PY+++ STG +DYD LE+ A FRP
Sbjct: 194 RIMGLDLPHGGHLSHGFMTA-KRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRP 252
Query: 183 KLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTT 242
KLII G SAY RD+DY R R++AD GA L+ DMAHISGLVAA +PFEYCDIVTTTT
Sbjct: 253 KLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTT 312
Query: 243 HKSLRGPRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALAVA 302
HKSLRGPR GMIF+R G D E +N AVFP LQGGPHNH IG LAV
Sbjct: 313 HKSLRGPRGGMIFFRKDPIN---------GVDLESAVNNAVFPGLQGGPHNHTIGGLAVC 363
Query: 303 LKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEK 362
LK A +P FKAY K+V +N A+ N L+ G+ LV+GG++NHLVL DLRP+G+ G +VEK
Sbjct: 364 LKHAQSPEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEK 423
Query: 363 LCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTLEI 422
+ D+ +IT+NKN+V GD SAL PGG+R+G+PAMT+RGL EKDF + +F+ V +T+E
Sbjct: 424 ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEA 483
Query: 423 QNEY-GKLLKDFNKGLVN-----NKAIEELKADVEKFSASFDMPG 461
+ G L+DFNK + + + ++ LK VE F++ F +PG
Sbjct: 484 KKAAPGSKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPG 528
>AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine
transhydroxymethyltransferase 1 | chr4:17831891-17834742
REVERSE LENGTH=517
Length = 517
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/468 (57%), Positives = 344/468 (73%), Gaps = 7/468 (1%)
Query: 9 NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
N PL VDPEI D+IEHEK RQ +G+ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52 NAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 111
Query: 69 YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
YGGNE+ID E LC+ RAL+AF LD WGVNVQP SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALD 171
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
LP GGHL+HGY T KKISA SI+FE++PY+++ STGYIDYD++E+ A FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAG 230
Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRG 248
SAY R +DYAR R+V +K A++L DMAHISGLVAA +PF+Y D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRG 290
Query: 249 PRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 308
PR MIF+R E YDFEDKIN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 349
Query: 309 PGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCN 368
+KAY +QV +N+ LM +GY LV+GGT+NHLVL +L+P G+ G++VEK+ + +
Sbjct: 350 SEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVH 409
Query: 369 ITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTLEIQNE-YG 427
I NKN V GD SA+ PGG+R+G PA+TSRG VE+DF ++ E+ +AV++ L++++E G
Sbjct: 410 IASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQG 469
Query: 428 KLLKDFNKGLVNNKAIE----ELKADVEKFSASFDMPGFLVSELKYKD 471
LKDF + ++ I+ +L+ +VE+F+ F GF +KYK+
Sbjct: 470 TKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
>AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
chr5:9418299-9421725 FORWARD LENGTH=517
Length = 517
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/468 (56%), Positives = 338/468 (72%), Gaps = 7/468 (1%)
Query: 9 NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
N L +DPE+ D+IE EK RQ +G ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 69 YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
YGGNE+ID E LC+ RAL+AF LD + WGVNVQ SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
LP GGHL+HGY T KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230
Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRG 248
SAY R +DYAR R+V +K A++L DMAHISGLVAA +PFEY D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 290
Query: 249 PRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 308
PR MIF+R E YD+ED+IN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQART 349
Query: 309 PGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCN 368
P +KAY QV N L++KGY LV+GGT+NHLVL +L+ G+ G++VEK+ +L +
Sbjct: 350 PEYKAYQDQVLRNCSKFAETLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVH 409
Query: 369 ITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTLEIQNE-YG 427
I NKN V GD SA+ PGG+R+G PA+TSRG +E+DF ++ E+ AV + L+I+ E G
Sbjct: 410 IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQG 469
Query: 428 KLLKDFNKGLVNNKAIE----ELKADVEKFSASFDMPGFLVSELKYKD 471
LKDF + +N+ ++ +L+ VE+++ F GF ++YK+
Sbjct: 470 TKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETMRYKE 517
>AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
chr5:9418299-9421725 FORWARD LENGTH=533
Length = 533
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/484 (54%), Positives = 341/484 (70%), Gaps = 23/484 (4%)
Query: 9 NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
N L +DPE+ D+IE EK RQ +G ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 69 YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
YGGNE+ID E LC+ RAL+AF LD + WGVNVQ SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
LP GGHL+HGY T KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230
Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRG 248
SAY R +DYAR R+V +K A++L DMAHISGLVAA +PFEY D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 290
Query: 249 PRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 308
PR MIF+R E YD+ED+IN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQART 349
Query: 309 PGFKAYAKQVKANA----------VAIGNY------LMSKGYSLVTGGTENHLVLWDLRP 352
P +KAY QV N I +Y L++KGY LV+GGT+NHLVL +L+
Sbjct: 350 PEYKAYQDQVLRNCSKFAELDIRPTVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKN 409
Query: 353 LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFL 412
G+ G++VEK+ +L +I NKN V GD SA+ PGG+R+G PA+TSRG +E+DF ++ E+
Sbjct: 410 KGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYF 469
Query: 413 HRAVSLTLEIQNE-YGKLLKDFNKGLVNNKAIE----ELKADVEKFSASFDMPGFLVSEL 467
AV + L+I+ E G LKDF + +N+ ++ +L+ VE+++ F GF +
Sbjct: 470 DLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETM 529
Query: 468 KYKD 471
+YK+
Sbjct: 530 RYKE 533
>AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
chr5:9418299-9421725 FORWARD LENGTH=533
Length = 533
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/484 (54%), Positives = 341/484 (70%), Gaps = 23/484 (4%)
Query: 9 NTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRY 68
N L +DPE+ D+IE EK RQ +G ELI SENFTS +V+QA+GS +TNKYSEG PG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 69 YGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 128
YGGNE+ID E LC+ RAL+AF LD + WGVNVQ SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICG 188
LP GGHL+HGY T KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRPKLI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230
Query: 189 GSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRG 248
SAY R +DYAR R+V +K A++L DMAHISGLVAA +PFEY D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 290
Query: 249 PRAGMIFYRXXXXXXXXXXXENAGYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 308
PR MIF+R E YD+ED+IN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQART 349
Query: 309 PGFKAYAKQVKANA----------VAIGNY------LMSKGYSLVTGGTENHLVLWDLRP 352
P +KAY QV N I +Y L++KGY LV+GGT+NHLVL +L+
Sbjct: 350 PEYKAYQDQVLRNCSKFAELDIRPTVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKN 409
Query: 353 LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFL 412
G+ G++VEK+ +L +I NKN V GD SA+ PGG+R+G PA+TSRG +E+DF ++ E+
Sbjct: 410 KGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYF 469
Query: 413 HRAVSLTLEIQNE-YGKLLKDFNKGLVNNKAIE----ELKADVEKFSASFDMPGFLVSEL 467
AV + L+I+ E G LKDF + +N+ ++ +L+ VE+++ F GF +
Sbjct: 470 DLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETM 529
Query: 468 KYKD 471
+YK+
Sbjct: 530 RYKE 533