Miyakogusa Predicted Gene
- Lj6g3v0227600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0227600.1 Non Chatacterized Hit- tr|I3SAL6|I3SAL6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0.00000000000001,seg,NULL; DUF4033,Domain of unknown function
DUF4033,CUFF.57657.1
(264 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64680.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 336 1e-92
AT1G03055.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 148 3e-36
AT4G01995.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 112 2e-25
AT1G03055.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 65 4e-11
>AT1G64680.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins
in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0;
Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
15 (source: NCBI BLink). | chr1:24036071-24037062
FORWARD LENGTH=250
Length = 250
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/240 (70%), Positives = 187/240 (77%), Gaps = 6/240 (2%)
Query: 27 RTNIIRCGIAEPSGEPAPFGEKTRYNDGVFARVFMTLFARKMEKFAKPVRKGEENKKKEG 86
R RCGIAEPSGEPAP G KTRY DG+ RVFM LFARKM+KF K +++ K++G
Sbjct: 15 RRRSTRCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS---KKKKDTKEKG 71
Query: 87 L--YDYESFVDXXXXXXXXXXXXXXXXXXXEVLLSMLPPGAPAQFRKLFPPTKWAAEFNA 144
YDYESFV+ EVLLSMLPPGAP QFRKLFPPTKWAAEFNA
Sbjct: 72 FWEYDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLFPPTKWAAEFNA 131
Query: 145 ALTVPFFHWLVGPSEVVEVEINGVKQKSGVHIKKCRYLENSGCVGMCVNMCKTPTQDFFT 204
ALTVPFFHWLVGPS+V+EVE+NGVKQ+SGV IKKCRYLENSGCVGMCVNMCK PTQDFFT
Sbjct: 132 ALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQDFFT 191
Query: 205 NEFGLPLTMIPNFEDMSCEMVYGQAPPPFEEDPVSKQPCYAKICSVVPQPSTSVCPKLQG 264
NEFGLPLTM PN+EDMSCEM+YGQAPP FEED +KQPC A ICS + PS+ +CPKL+
Sbjct: 192 NEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLADICS-MSNPSSPICPKLEA 250
>AT1G03055.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins
in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0;
Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes -
15 (source: NCBI BLink). | chr1:710102-711763 REVERSE
LENGTH=264
Length = 264
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 7/192 (3%)
Query: 53 DGVFARVFMTLFARKMEKFAKPVRKGEENKKKEGLYDYESFVDXXXXXXXXXXXXXXXXX 112
D F+++ + ++ ++ A G + K DY+ VD
Sbjct: 67 DSFFSKIAINYLSKNLQDAA-----GISSSSKST--DYDRLVDTATRVSRNFDTKQQHEF 119
Query: 113 XXEVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGVKQKS 172
L LP + + FPP+K + E A T F WLVGPSEV E E+NG K+KS
Sbjct: 120 VLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRKEKS 179
Query: 173 GVHIKKCRYLENSGCVGMCVNMCKTPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQAPPP 232
V+I+KCR+LE S CVGMC ++CK P+Q F N G+P+ M P+F D+SC+M++G+ PP
Sbjct: 180 VVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPE 239
Query: 233 FEEDPVSKQPCY 244
E+DP KQPC+
Sbjct: 240 IEDDPAMKQPCF 251
>AT4G01995.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G64680.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:873075-874619 FORWARD LENGTH=258
Length = 258
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 7/139 (5%)
Query: 116 VLLSMLPPGAPAQFRKLFPPT---KWAAEFNAALTVPFFHWLVGPSEVVEVEI-NGVKQK 171
+L S+ PP ++ L P K AA A +TV WL+GPS+V +++ NG
Sbjct: 109 ILKSLFPPLILELYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWD 168
Query: 172 SGVHIKKCRYLENSGCVGMCVNMCKTPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQAPP 231
SGV ++KC+YLE S CVG+C+N CK PTQ FF + G+PL M PNF+D SC+ +G APP
Sbjct: 169 SGVFVEKCQYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPP 228
Query: 232 PFEEDPVSKQPCYAKICSV 250
E+D +PC+ + CS+
Sbjct: 229 --EDDGNVNEPCF-ETCSI 244
>AT1G03055.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G64680.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:710912-711763 REVERSE LENGTH=200
Length = 200
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 53 DGVFARVFMTLFARKMEKFAKPVRKGEENKKKEGLYDYESFVDXXXXXXXXXXXXXXXXX 112
D F+++ + ++ ++ A G + K DY+ VD
Sbjct: 67 DSFFSKIAINYLSKNLQDAA-----GISSSSKST--DYDRLVDTATRVSRNFDTKQQHEF 119
Query: 113 XXEVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGVKQKS 172
L LP + + FPP+K + E A T F WLVGPSEV E E+NG K+KS
Sbjct: 120 VLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRKEKS 179
Query: 173 GVHIKKCR 180
V+I+KCR
Sbjct: 180 VVYIEKCR 187