Miyakogusa Predicted Gene

Lj6g3v0227420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0227420.1 Non Chatacterized Hit- tr|I3S932|I3S932_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.1,0,60S
RIBOSOMAL PROTEIN L12,Ribosomal protein L11; Ribosomal protein
L11/L12,Ribosomal protein L11; no,CUFF.57646.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32990.1 | Symbols: PRPL11 | plastid ribosomal protein l11 | ...   261   2e-70
AT5G51610.1 | Symbols:  | Ribosomal protein L11 family protein |...   137   6e-33
AT4G35490.1 | Symbols: MRPL11 | mitochondrial ribosomal protein ...   110   8e-25

>AT1G32990.1 | Symbols: PRPL11 | plastid ribosomal protein l11 |
           chr1:11955827-11957139 FORWARD LENGTH=222
          Length = 222

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 136/142 (95%)

Query: 78  IIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYVIPVEITVYDDKSFT 137
           +IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADK GY+IPVEITV+DDKSFT
Sbjct: 77  VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVFDDKSFT 136

Query: 138 FILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQVRTIATEKLPDLNCSTLESAMRI 197
           FILKTPPASVLLLKAAGVEKGSKDP+  KVG +TIDQ+RTIA EKLPDLNC+T+ESAMRI
Sbjct: 137 FILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIESAMRI 196

Query: 198 IAGTAANMGIDVDPPVLEPKIK 219
           IAGTAANMGID+DPP+LEPK K
Sbjct: 197 IAGTAANMGIDIDPPILEPKKK 218


>AT5G51610.1 | Symbols:  | Ribosomal protein L11 family protein |
           chr5:20965577-20966805 FORWARD LENGTH=182
          Length = 182

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 75/89 (84%)

Query: 133 DKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQVRTIATEKLPDLNCSTLE 192
           D+SFTFILKTPP S LLLKAAGV+KGSKDPK  KVG +TIDQVR IA  KLP+LNC+T+ 
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNCTTIV 151

Query: 193 SAMRIIAGTAANMGIDVDPPVLEPKIKEA 221
           S MR IAGTA NMGID+DPP+LEPK K A
Sbjct: 152 STMRTIAGTAGNMGIDIDPPILEPKNKVA 180


>AT4G35490.1 | Symbols: MRPL11 | mitochondrial ribosomal protein L11
           | chr4:16855918-16856385 FORWARD LENGTH=155
          Length = 155

 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 79  IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KPGYVIPVEITVYDDKSFT 137
           I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   KP   + V IT + D SF 
Sbjct: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNSFE 76

Query: 138 FILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQVRTIATEKLPDLNCST--LESAM 195
           F +K+P  S  + KAAGV+KGS  P    V  +++  V  IA  K  D  C    LES  
Sbjct: 77  FTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVKQTDPFCQYMPLESIC 136

Query: 196 RIIAGTAANMGIDV 209
           + I GTA +MGI +
Sbjct: 137 KSIIGTANSMGIKI 150