Miyakogusa Predicted Gene

Lj6g3v0217180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0217180.1 Non Chatacterized Hit- tr|I4HTV3|I4HTV3_MICAE
Uncharacterized protein OS=Microcystis aeruginosa PCC
,35.1,9e-19,seg,NULL,CUFF.57622.1
         (324 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04360.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   343   1e-94

>AT2G04360.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 35333 Blast hits to 34131 proteins in
           2444 species: Archae - 798; Bacteria - 22429; Metazoa -
           974; Fungi - 991; Plants - 531; Viruses - 0; Other
           Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:1519645-1521030 REVERSE LENGTH=320
          Length = 320

 Score =  343 bits (880), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/253 (65%), Positives = 196/253 (77%), Gaps = 8/253 (3%)

Query: 65  SRKMGLLHVCHTSKKE-TDIETTQ----GRDWTTSILLFFLWAALMYYVFFLSPDQTPTR 119
            +K+   H+C +S     + E TQ    GRDW++SILLF LW AL+YY F L+PDQTPT+
Sbjct: 56  EKKVTFFHICKSSSNNPEEPEKTQIQDEGRDWSSSILLFALWGALLYYCFNLAPDQTPTQ 115

Query: 120 DLYFXXXXXXXXGDDGFRMNEVLVSMWYIMGLWPLAYSMLLLPTGRSSESKIPVWPFLIL 179
           DLYF        GDDGFRMN++LV +WYIMGLWPL Y+MLLLPTG    SK P WPF++L
Sbjct: 116 DLYFLKKLLNLKGDDGFRMNQILVGLWYIMGLWPLVYAMLLLPTG---TSKTPAWPFVVL 172

Query: 180 SCFGGVYALLPYFVLWKPPAPPVEETQLKTWPLNFLESKVTAVISLAAGIGLITYAGLSG 239
           S FGGVYALLPYF LW PP+PPV ET+L+ WPLN LESKVTA ++L AG+G+I Y+ +  
Sbjct: 173 SFFGGVYALLPYFALWNPPSPPVSETELRQWPLNVLESKVTAGVTLVAGLGIILYSVVGN 232

Query: 240 DDVWKEFYQYFRESKFIHIMTIDFTLLSTLAPFWVYNDMTTRKWFDKGSWLLPVSLIPFL 299
              W EFYQYFRESKFIH+ ++DF LLS  APFWVYNDMTTRKWFDKGSWLLPVS+IPFL
Sbjct: 233 AGDWTEFYQYFRESKFIHVTSLDFCLLSAFAPFWVYNDMTTRKWFDKGSWLLPVSVIPFL 292

Query: 300 GPGLYLLLRPSLS 312
           GP LYLLLRP++S
Sbjct: 293 GPSLYLLLRPAVS 305