Miyakogusa Predicted Gene
- Lj6g3v0204630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0204630.1 Non Chatacterized Hit- tr|B9RYM8|B9RYM8_RICCO
N-rich protein, putative OS=Ricinus communis
GN=RCOM_1,84.44,0.000000000001,Dev_Cell_Death,Development/cell death
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
de,CUFF.57603.1
(322 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domai... 256 2e-68
AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domai... 252 3e-67
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose ... 102 4e-22
AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domai... 98 8e-21
AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domai... 97 1e-20
AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domai... 88 9e-18
AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domai... 88 9e-18
AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domai... 88 9e-18
AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domai... 87 1e-17
AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domai... 81 8e-16
AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domai... 80 2e-15
AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domai... 80 2e-15
AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domai... 80 2e-15
>AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:16815630-16816932 FORWARD LENGTH=349
Length = 349
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 115/134 (85%), Positives = 126/134 (94%)
Query: 177 GAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLP 236
G +KRFKTLP +E+LPRNET+GGYIFVCNNDTM ENL+RQLFGLPPRYRDSVR+ITPGLP
Sbjct: 196 GLDKRFKTLPPAEALPRNETIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLP 255
Query: 237 LFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDS 296
LFLYNYSTHQLHGI+EAASFGGTNI+ A+EDKKC GESRFPAQV+ ITRK+C PLEEDS
Sbjct: 256 LFLYNYSTHQLHGIYEAASFGGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDS 315
Query: 297 FRPILHHYDGPKFR 310
FRPILHHYDGPKFR
Sbjct: 316 FRPILHHYDGPKFR 329
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 1 MDNNNSNEQSFWQFSDQLRVQASGLANLSLNDSIWSNNYTSKRPDQRRNFDAS 53
M+ NN+N+QSFWQFSDQLRVQ LANLSLNDSIWS N K +RRN D +
Sbjct: 1 MEYNNNNQQSFWQFSDQLRVQTPNLANLSLNDSIWSTNSVFK---ERRNLDIA 50
>AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:9990020-9991407 FORWARD LENGTH=296
Length = 296
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 109/134 (81%), Positives = 122/134 (91%)
Query: 177 GAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLP 236
+KRFKTLP SE+LPRNE +GGYIFVCNNDTM E+++R LFGLPPRYRDSVR+ITPGLP
Sbjct: 142 AVDKRFKTLPASETLPRNEVLGGYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLP 201
Query: 237 LFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDS 296
LFLYNY+THQLHGIFEA +FGGTNID TAWEDKKC GESRFPAQV++ RKIC+ LEEDS
Sbjct: 202 LFLYNYTTHQLHGIFEATTFGGTNIDATAWEDKKCKGESRFPAQVRIRVRKICKALEEDS 261
Query: 297 FRPILHHYDGPKFR 310
FRP+LHHYDGPKFR
Sbjct: 262 FRPVLHHYDGPKFR 275
>AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose
oxidase/kelch, beta-propeller (InterPro:IPR011043),
Kelch repeat type 1 (InterPro:IPR006652),
Development/cell death domain (InterPro:IPR013989),
Kelch related (InterPro:IPR013089), Kelch-type beta
propeller (InterPro:IPR015915); BEST Arabidopsis
thaliana protein match is: DCD (Development and Cell
Death) domain protein (TAIR:AT3G11000.1); Has 16133
Blast hits to 7053 proteins in 482 species: Archae - 40;
Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants -
1896; Viruses - 673; Other Eukaryotes - 1230 (source:
NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
Length = 656
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 12/117 (10%)
Query: 197 VGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLYNYSTHQLHGIFEAASF 256
+GG +F C +T+ E + +QLFGLP + V+ I GLPLFL+NYS LHGIFEAA
Sbjct: 18 LGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGC 77
Query: 257 GGTNIDPTAWEDKKCIGESR--FPAQVQVITRKICEPLEEDSFRPIL-------HHY 304
G N DP W G R +PAQV + R CEPL E+ F+P + HH+
Sbjct: 78 GQLNFDPYGWTSD---GSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHF 131
>AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3448442-3450283 FORWARD LENGTH=488
Length = 488
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 197 VGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLYNYSTHQLHGIFEAASF 256
+ G IF C T+ E + LFGLP + +++I PGL LFL+NYS LHGIFEAAS
Sbjct: 11 LCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASE 70
Query: 257 GGTNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDSFRPIL 301
G NID AW S +PAQV+V R CEPL E+ F P++
Sbjct: 71 GKLNIDSKAWSPNG-TDPSPYPAQVKVRVRVRCEPLPEEKFSPVI 114
>AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3447847-3450283 FORWARD LENGTH=607
Length = 607
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 197 VGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLYNYSTHQLHGIFEAASF 256
+ G IF C T+ E + LFGLP + +++I PGL LFL+NYS LHGIFEAAS
Sbjct: 130 LCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASE 189
Query: 257 GGTNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDSFRPIL 301
G NID AW S +PAQV+V R CEPL E+ F P++
Sbjct: 190 GKLNIDSKAWSPNG-TDPSPYPAQVKVRVRVRCEPLPEEKFSPVI 233
>AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 165 HGDNNNSDVTKTGAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRY 224
+G+ N + + G E+R L +E + GYIF+CN T + R ++FG+P
Sbjct: 38 YGNGNTTIGLEKGIERR---------LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGG 88
Query: 225 RDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVI 284
+D V SI PG+ LFLY++ L+G++EA G +I+P A+E K +PAQV
Sbjct: 89 KDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGK-------YPAQVGFR 141
Query: 285 TRKICEPLEEDSFR-PILHHYDGPKFR 310
C PL E++F+ I +Y G KF+
Sbjct: 142 IVMNCLPLTENTFKSAIYENYKGSKFK 168
>AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 165 HGDNNNSDVTKTGAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRY 224
+G+ N + + G E+R L +E + GYIF+CN T + R ++FG+P
Sbjct: 38 YGNGNTTIGLEKGIERR---------LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGG 88
Query: 225 RDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVI 284
+D V SI PG+ LFLY++ L+G++EA G +I+P A+E K +PAQV
Sbjct: 89 KDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGK-------YPAQVGFR 141
Query: 285 TRKICEPLEEDSFR-PILHHYDGPKFR 310
C PL E++F+ I +Y G KF+
Sbjct: 142 IVMNCLPLTENTFKSAIYENYKGSKFK 168
>AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863741 REVERSE LENGTH=742
Length = 742
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 165 HGDNNNSDVTKTGAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRY 224
+G+ N + + G E+R L +E + GYIF+CN T + R ++FG+P
Sbjct: 42 YGNGNTTIGLEKGIERR---------LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGG 92
Query: 225 RDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVI 284
+D V SI PG+ LFLY++ L+G++EA G +I+P A+E K +PAQV
Sbjct: 93 KDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGK-------YPAQVGFR 145
Query: 285 TRKICEPLEEDSFR-PILHHYDGPKFR 310
C PL E++F+ I +Y G KF+
Sbjct: 146 IVMNCLPLTENTFKSAIYENYKGSKFK 172
>AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24855908-24863729 REVERSE LENGTH=1346
Length = 1346
Score = 87.4 bits (215), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 165 HGDNNNSDVTKTGAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRY 224
+G+ N + + G E+R L E LP GYIF+CN T + R ++FG+P
Sbjct: 38 YGNGNTTIGLEKGIERR---LDHHEQLP------GYIFMCNGRTKTDCYRYRVFGIPRGG 88
Query: 225 RDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVI 284
+D V SI PG+ LFLY++ L+G++EA G +I+P A+E K +PAQV
Sbjct: 89 KDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGK-------YPAQVGFR 141
Query: 285 TRKICEPLEEDSFR-PILHHYDGPKFR 310
C PL E++F+ I +Y G KF+
Sbjct: 142 IVMNCLPLTENTFKSAIYENYKGSKFK 168
>AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:13959685-13961989 FORWARD LENGTH=691
Length = 691
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 171 SDVTKTGAEKRFK--TLPQSESL--PRNETVGGYIFVCNNDTMAENLRRQLFGLPPRYRD 226
+D T+ G E+R + P+ + P +GG IF+CN T + R + G+ + +D
Sbjct: 289 ADTTEQGMEERKEQPVDPEKREMDGPGKVKIGGLIFMCNTKTRPDCFRFSVMGVQEKRKD 348
Query: 227 SVRSITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVITR 286
V+ I PGL LFLY+Y L+GIFEA+S GG ++ A+ G S FPAQV+
Sbjct: 349 FVKGIKPGLKLFLYDYDLKLLYGIFEASSAGGMKLERNAF------GGS-FPAQVRFKVF 401
Query: 287 KICEPLEEDSF-RPILHHY 304
C PL E F + I+ +Y
Sbjct: 402 SDCIPLAESQFKKAIIENY 420
>AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 199 GYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGG 258
G IF+ NN T E L R+LFGLP V+ + G+ LFL+ + +LHG+F+A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 259 TNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDSFRPILH 302
NI+P A+ +FPAQV+ + C PL E F +H
Sbjct: 83 INIEPNAFRSSG----KQFPAQVKFTEKWRCRPLCESEFGNAIH 122
>AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 199 GYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGG 258
G IF+ NN T E L R+LFGLP V+ + G+ LFL+ + +LHG+F+A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 259 TNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDSFRPILH 302
NI+P A+ +FPAQV+ + C PL E F +H
Sbjct: 83 INIEPNAFRSSG----KQFPAQVKFTEKWRCRPLCESEFGNAIH 122
>AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 199 GYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLYNYSTHQLHGIFEAASFGG 258
G IF+ NN T E L R+LFGLP V+ + G+ LFL+ + +LHG+F+A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 259 TNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDSFRPILH 302
NI+P A+ +FPAQV+ + C PL E F +H
Sbjct: 83 INIEPNAFRSSG----KQFPAQVKFTEKWRCRPLCESEFGNAIH 122