Miyakogusa Predicted Gene
- Lj6g3v0156180.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0156180.2 Non Chatacterized Hit- tr|I1JDJ8|I1JDJ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,78.33,3e-19,WD40,WD40
repeat; WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; WD_REPE,CUFF.57567.2
(66 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33270.1 | Symbols: CDC20.1 | Transducin family protein / WD-... 64 2e-11
AT4G33260.1 | Symbols: CDC20.2 | Transducin family protein / WD-... 64 2e-11
AT5G27080.1 | Symbols: | Transducin family protein / WD-40 repe... 60 2e-10
AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 3e-10
AT5G27570.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 3e-10
AT5G26900.1 | Symbols: | Transducin family protein / WD-40 repe... 58 1e-09
AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12... 55 7e-09
AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protein... 55 9e-09
AT5G13840.2 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468677-447... 55 9e-09
AT5G13840.1 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468677-447... 55 9e-09
>AT4G33270.1 | Symbols: CDC20.1 | Transducin family protein / WD-40
repeat family protein | chr4:16044545-16046590 REVERSE
LENGTH=457
Length = 457
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPAT 46
M K+ L H SRVL+++QSPDG TV SA DETLRFW++FG P T
Sbjct: 392 MVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPET 437
>AT4G33260.1 | Symbols: CDC20.2 | Transducin family protein / WD-40
repeat family protein | chr4:16041233-16043180 REVERSE
LENGTH=447
Length = 447
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPAT 46
M K+ L H SRVL+++QSPDG TV SA DETLRFW++FG P T
Sbjct: 382 MVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPET 427
>AT5G27080.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr5:9529603-9531081 REVERSE LENGTH=466
Length = 466
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISHLDNL-LS 59
M+K+ L+ H SRVL ++QSP+G TV SA DE LR W++FG P T K + + L L
Sbjct: 376 MSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWNVFGEPPKTTKKAASKNYLELF 435
Query: 60 LKISALR 66
+++LR
Sbjct: 436 SHVNSLR 442
>AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9976007-9977601 FORWARD LENGTH=428
Length = 428
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPP 44
M K+ L+ H SRVL ++QSPDG TV SA DETLR W++FG P
Sbjct: 362 MVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEP 405
>AT5G27570.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9734896-9736131 REVERSE LENGTH=411
Length = 411
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPP 44
M K+ L+ H SRVL ++QSPDG TV SA DETLR W++FG P
Sbjct: 345 MVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEP 388
>AT5G26900.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr5:9463752-9465086 FORWARD LENGTH=444
Length = 444
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPP 44
M+K+ L+ H SRVL ++QSP+G TV SA DE LR W++FG P
Sbjct: 378 MSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWNVFGEP 421
>AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 |
chr4:12012743-12015663 FORWARD LENGTH=483
Length = 483
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTS 49
M+K+ L H RVL+L+ SPDG T+V+ DETLRFW++F P + +
Sbjct: 420 MSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNT 468
>AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protein 52
A2 | chr4:7160618-7163257 REVERSE LENGTH=475
Length = 475
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSK 50
M+K+ L H+ RVL+L+ SPDG T+V+ DETLRFW++F P + + +
Sbjct: 412 MSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRE 461
>AT5G13840.2 | Symbols: FZR3 | FIZZY-related 3 |
chr5:4468677-4470706 REVERSE LENGTH=481
Length = 481
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIF 41
M+KV L H+ RVL+L+ SPDG T+V+ DETLRFW++F
Sbjct: 418 MSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVF 458
>AT5G13840.1 | Symbols: FZR3 | FIZZY-related 3 |
chr5:4468677-4470706 REVERSE LENGTH=481
Length = 481
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 1 MNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIF 41
M+KV L H+ RVL+L+ SPDG T+V+ DETLRFW++F
Sbjct: 418 MSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVF 458