Miyakogusa Predicted Gene

Lj6g3v0144960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0144960.1 Non Chatacterized Hit- tr|I1QER6|I1QER6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,30.03,8e-18,seg,NULL,CUFF.57558.1
         (972 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10650.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   336   5e-92
AT5G20200.1 | Symbols:  | nucleoporin-related | chr5:6816776-682...    86   2e-16

>AT3G10650.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042
           Blast hits to 31782 proteins in 2093 species: Archae -
           202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552;
           Plants - 1653; Viruses - 629; Other Eukaryotes - 13509
           (source: NCBI BLink). | chr3:3325562-3330819 REVERSE
           LENGTH=1309
          Length = 1309

 Score =  336 bits (861), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 256/609 (42%), Positives = 334/609 (54%), Gaps = 89/609 (14%)

Query: 2   ATAREENPYEXXXXXXXXXXXXXXXXTQTTPYDRPPTALRNPTRNNG------WLSKLVD 55
           A     NPY                 +Q TPYDRP T++RN     G      WLSKLVD
Sbjct: 5   ARGESSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLSKLVD 64

Query: 56  PAQRLITYSANSLFSSVFRNRL----TAXXXXXXXETVPEVRENHHQESAIT-EEQVANE 110
           PAQRLITYSA  LF S+ R RL    T        + +PE   N  QE+ +  +E V+N 
Sbjct: 65  PAQRLITYSAQRLFGSLSRKRLGSGETPLQSPEQQKQLPERGVN--QETKVGHKEDVSNL 122

Query: 111 S--NGKQKVVGESSVQNNCSDGGGLTELEKLFKQKTFTRSEIDHLTELLRSRTVDSP-IG 167
           S  NG  ++   ++  +   DG   T+LEK+ + KTFTRSE+D LT LLRS+  DS  + 
Sbjct: 123 SMKNGLIRMEDTNASVDPPKDG--FTDLEKILQGKTFTRSEVDRLTTLLRSKAADSSTMN 180

Query: 168 EGKRTEVVPPDSTLPCKQKEEYSQTPVLENGIGSDLVSTPYVTSSVSIEDVASPAELAKS 227
           E +R EV       P  +++        +NG  + LVSTP  +     E +ASPA+LAK+
Sbjct: 181 EEQRNEVGMVVRHPPSHERDRTHP----DNGSMNTLVSTPPGSLRTLDECIASPAQLAKA 236

Query: 228 YMGSRPSKIAPSMLGLRSPP-KEDPNLLKSQHFAHKSPIMSIVPRATTTVARVHENGFVP 286
           YMGSRPS++ PSMLGLR    +ED   L    F  KSP MS+V + +    R  ENGFV 
Sbjct: 237 YMGSRPSEVTPSMLGLRGQAGREDSVFLNRTPFPQKSPTMSLVTKPSGQ--RPLENGFVT 294

Query: 287 PRSRGRSAIYSMARTPYTRVHPASTLKSARVGVEGELSSSSQYALDHDMLSGSKQG---A 343
           PRSRGRSA+YSMARTPY+R  P S++K       G L  +S    +  + SGS+QG    
Sbjct: 295 PRSRGRSAVYSMARTPYSR--PQSSVKI------GSLFQASPSKWEESLPSGSRQGFQSG 346

Query: 344 LKRRSSVLDNDIGFFGPVRRIRHKSNLLSSKGLTSPHSGGHLSITRSEVKHGHMKLSAEN 403
           LKRRSSVLDNDIG  GPVRRIR KSN LSS+ L  P S   LS+ R+         S ++
Sbjct: 347 LKRRSSVLDNDIGSVGPVRRIRQKSN-LSSRSLALPVSESPLSV-RANGGEKTTHTSKDS 404

Query: 404 IDDAMPSTSFPPIPSKSSDTASKILQQLDRLVSPNEKSSEMRLQAMNDKSPTKLSPSMLR 463
            +D +P +SF  +P+KSS+ ASKILQQLD+LVS  E            KSP+KLSPSMLR
Sbjct: 405 AED-IPGSSFNLVPTKSSEMASKILQQLDKLVSTRE------------KSPSKLSPSMLR 451

Query: 464 GKALQSMETVDSSKLLNNI---RDSDIDDSHGYLSASAKKLSKIDKVES--------GPS 512
           G AL+S++ V++ K L N+   + +  D S+     S + +S+    +S        G S
Sbjct: 452 GPALKSLQNVEAPKFLGNLPEKKANSPDSSYQKQEISRESVSREVLAQSEKTGDAVDGTS 511

Query: 513 KVVSPDHGLVPFATDADATVTRNQDMSTVKFGDSSVTKPVS-----YPPQKKRAFHMSAH 567
           K  S                +++QDM         V  P++     +PP KKR+F MSAH
Sbjct: 512 KTGS----------------SKDQDMR-----GKGVYMPLTNSLEEHPP-KKRSFRMSAH 549

Query: 568 EDFLELDDD 576
           EDFLELDDD
Sbjct: 550 EDFLELDDD 558


>AT5G20200.1 | Symbols:  | nucleoporin-related |
           chr5:6816776-6821620 FORWARD LENGTH=762
          Length = 762

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 197/485 (40%), Gaps = 106/485 (21%)

Query: 31  TPYDRPPTALRNPTRNNGWLSKLVDPAQRLITYSANSLFSSVFRNRLTAXXXXXXXETVP 90
           TPY RP    +N  +   W+S++VDPA R+I+  A  +    F N  +A       E   
Sbjct: 39  TPYSRP---TQNQVQRRPWISRIVDPAYRIISGGATRILPYFFSNAASAPALAAPPED-- 93

Query: 91  EVRENHHQESAITEEQ-------------------------VANESNGKQKVVGESSVQN 125
              +N HQ       Q                          AN + G   +  +   + 
Sbjct: 94  ---QNQHQGELQNNPQDNDPSVTPISNKPEPASIEVGGPSGTANVNEGNFSISAQRRGKA 150

Query: 126 NCSDGGGLTELEKLFKQKTFTRSEIDHLTELLRSRTVDSP-IGEGKRTEVVP------PD 178
             +D   ++ELE+L + KTF+++EID L E++ SR +D P +   +R   +P       +
Sbjct: 151 ALNDDVAISELERLMEGKTFSQAEIDRLIEMISSRAIDLPDVKRDERNLEIPLREGAKKN 210

Query: 179 STLPCKQKEEYSQTPVLENGIGSDLVSTP------YVTSSVSIEDVA--SPAELAKSYMG 230
            +L  K KE     P+      S++ +TP       +     I D    SPAELAK+YMG
Sbjct: 211 MSLFDKAKE-----PIGGKDANSEIWATPTPLAKSIILDGDKIRDEVGLSPAELAKAYMG 265

Query: 231 SRPSKIAPSMLGLRSPPKEDPNLLKSQHFAHKSPIMSIVPRATTT---VARVHENGFVPP 287
            + S  +      R+    + + L       KS + S   + +     +    ++GF  P
Sbjct: 266 GQTSSSSSQGFVARN----EKDCLDRSMLVGKSSLASPSSKPSACWPGIKSSEQSGFATP 321

Query: 288 RSRGRS-AIYSMARTPYTRVHPASTLKSARVGVEGELSSSSQYALDHDMLSGSKQGALKR 346
           +SR  S  + +  RTPY+R     T+ S       +L + S   L  ++ S S+  +++R
Sbjct: 322 QSRRESYGLQNFPRTPYSR-----TILSNSKSKLMQLQNDSSKHLS-NLQSPSQ--SVER 373

Query: 347 RSSVLDN--DIGFFGPVRRIRHK----------------SNLLSSKGLTSPHSGGHLSIT 388
           R   L    D G FGP RR R                  S   +S  + S  +G    ++
Sbjct: 374 RYGQLSKGRDGGLFGPSRRTRQSATPSMVSPYSRPSRGASRFENSAIMKSSEAGESSYLS 433

Query: 389 RSEV----KHGHMKLSAENIDDAMPSTSFPPIPSKSSDTASKILQQLDRLVS---PNEKS 441
           RS++    KH   ++                +P+ SS  A  IL  L+R  S   P  K+
Sbjct: 434 RSQITTYGKHKEAEVGTLT------------VPTHSSQIARTILDHLERTQSQSTPKNKT 481

Query: 442 SEMRL 446
           +E++L
Sbjct: 482 AELKL 486