Miyakogusa Predicted Gene

Lj6g3v0143860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0143860.1 tr|F4I5S3|F4I5S3_ARATH Chromosome transmission
fidelity protein 18 OS=Arabidopsis thaliana GN=CTF18 ,57.19,0,no
description,NULL; seg,NULL; CTF18, CHROMOSOME TRANSMISSION FIDELITY
FACTOR 18 HOMOLOG,NULL; HOLLI,CUFF.57527.1
         (579 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04730.1 | Symbols: CTF18 | P-loop containing nucleoside trip...   566   e-161

>AT1G04730.1 | Symbols: CTF18 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr1:1325385-1331086 REVERSE LENGTH=943
          Length = 943

 Score =  566 bits (1460), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 304/583 (52%), Positives = 386/583 (66%), Gaps = 34/583 (5%)

Query: 1   MNSVLSHSRPKCLVVDEIDGALGDGRGAVEVLLKLVSAERKQNGGNKSLGERQLDGKSSK 60
           MNSV + SRPKCLV+DEIDGALGDG+GAV+V+LK+V AERK   G +++   +    SSK
Sbjct: 389 MNSVTADSRPKCLVIDEIDGALGDGKGAVDVILKMVLAERKHATGKENVENVKT---SSK 445

Query: 61  KRQKTASLSRPVICFCNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICYKEGMKAT 120
           K ++TA LSRPVIC CNDLYAPALRPLRQ+AKVHIFVQPTVSRVV+RLKYIC  EGMKA 
Sbjct: 446 KDRRTAPLSRPVICICNDLYAPALRPLRQIAKVHIFVQPTVSRVVNRLKYICNMEGMKAR 505

Query: 121 AIALTALAEYTECDIRSCLNTLQFVSKKKETLNAIDIGSQVVGQKDMSKNVLDIWKQFFQ 180
           + AL+ALAEYTECDIRSCLNTLQF+ KKKET+N IDIGSQVVG+KDMSK++ DIWK+ F 
Sbjct: 506 SFALSALAEYTECDIRSCLNTLQFLYKKKETINVIDIGSQVVGRKDMSKSLFDIWKEIFT 565

Query: 181 RKRTKKMERE----SRRSKSFEFDYLYSLISNRGDSDLFLDGIHENILQLNYHDPVMQKT 236
              T+KM+RE    +  S +  FD+L+SL+S+RGD DL  DGIHENILQL+YHDPVM KT
Sbjct: 566 ---TRKMKRERSNDASGSGAKNFDFLHSLVSSRGDYDLIFDGIHENILQLHYHDPVMDKT 622

Query: 237 VKCFNSLGVYDLMHQYIMCTQQMRIHVYLPAIAVNIHHIVAQVQKPNIEWPKSYQRCRAM 296
           + C + LG  DL+H+YIM TQQM ++VY P++ + IH  VAQ+QKP IEWPKSY RCR +
Sbjct: 623 ISCLDGLGTSDLLHRYIMRTQQMPLYVYFPSLVIPIHRRVAQIQKPMIEWPKSYHRCRTL 682

Query: 297 MMERMDILKTWHYQISPSIARNLSASSFVEDXXXXXXXXXXXXTIRPVALQLLSDKEKND 356
           ++E+ + L++WH++I P I R+LS  SFVED            T+RPVA  LLSD++K  
Sbjct: 683 LVEKQESLRSWHHKIPPYIGRHLSIKSFVEDSISPLLHILSPPTLRPVASHLLSDRQKEQ 742

Query: 357 LAELVSTMVSYAVTYKTMKPDILLHTVKYEGADD-LGLSLVPPISNFINFKDYTSNHYVL 415
           LA LV  M SY++TYK +K D +L +++ + A D L L+L P + +FINFK +   H+VL
Sbjct: 743 LAGLVMLMCSYSLTYKNVKSDPVLSSLREDAASDALVLALDPHLFDFINFKGHQFKHHVL 802

Query: 416 SLAMXXXXXXXXXXXXILHVNNDKTVASVNGGHEIIDAGTNKVPLANTNRATAVDLKTNE 475
           +LAM            ++H    + +   +GG   I    NK  +   N+  A   KTN 
Sbjct: 803 ALAMKQV---------LVHEVEKQKILQASGGKSGI---LNKPEIKKINQDLAK--KTNA 848

Query: 476 FQANVFARLLNPTPITVSQDSNPNGSANATDXXXXXXXXXXXXXXXXXXXXXXXXXXNVK 535
             AN   R    TP+T    S P   +  T                           + K
Sbjct: 849 -AANESQR----TPVT----SKPPSVSVGTATTSKPNSSDVKKASRNALNFFDRFRKSRK 899

Query: 536 GLQNDRSQQKEATLEKHRCPLLFKFNEGFTNAVKRPVRMREFL 578
             ++    Q  AT ++   PLLFKFNEGFTNAVKRPVRMREFL
Sbjct: 900 DYEDPEDVQNRATAKRDSRPLLFKFNEGFTNAVKRPVRMREFL 942