Miyakogusa Predicted Gene

Lj6g3v0098580.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0098580.1 Non Chatacterized Hit- tr|K3YME3|K3YME3_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,95.07,0,THIOREDOXIN-LIKE PROTEN 4A, 4B,mRNA splicing factor,
thioredoxin-like U5 snRNP; Thioredoxin-like,Thi,CUFF.57499.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin-...   295   5e-81
AT3G24730.1 | Symbols:  | mRNA splicing factor, thioredoxin-like...    95   1e-20

>AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor,
           thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD
           LENGTH=142
          Length = 142

 Score =  295 bits (756), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA+KDKQEFIDIIET+Y
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>AT3G24730.1 | Symbols:  | mRNA splicing factor, thioredoxin-like U5
           snRNP | chr3:9030152-9030894 REVERSE LENGTH=159
          Length = 159

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDII 116
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 126

Query: 117 ETIYRGARKGRGLVIAP 133
           E IYRGA KG+ +V  P
Sbjct: 127 EAIYRGAMKGKMIVQCP 143