Miyakogusa Predicted Gene

Lj6g3v0098510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0098510.1 Non Chatacterized Hit- tr|D5A836|D5A836_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,43.17,4e-19,seg,NULL,CUFF.57523.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04555.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   152   9e-38
AT4G33380.1 | Symbols:  | unknown protein; Has 194 Blast hits to...    53   6e-08
AT4G33380.2 | Symbols:  | unknown protein; LOCATED IN: cellular_...    46   1e-05

>AT1G04555.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT4G33380.1);
           Has 84 Blast hits to 83 proteins in 15 species: Archae -
           0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:1242743-1243949 FORWARD LENGTH=152
          Length = 152

 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 102/144 (70%), Gaps = 1/144 (0%)

Query: 7   WRLRFSFRSATMVVCFLNIVTAIFLLHGFLASSYTRNKLSTANS-NSAQLSYIKESEEIR 65
           WR+RFSF++AT+ +  +N++  +FLL GF  SS + +  S++    SAQL YIKE+EE+R
Sbjct: 5   WRMRFSFKNATIALTVINVLIFLFLLQGFFTSSSSPSSSSSSRRLISAQLRYIKEAEELR 64

Query: 66  LAMLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVDLSKRLKDLRSLNDAAGVKALEE 125
           L M PLELI+RVREIEQE  +  E            VDLSKRLKD R+LNDA+ +KALEE
Sbjct: 65  LKMQPLELIRRVREIEQEASAGQETEQQKDVKQTTAVDLSKRLKDFRALNDASSLKALEE 124

Query: 126 WRKRKMERARQRQLEKNGTTSSQT 149
           WRKRKMERARQR LEK G  SS T
Sbjct: 125 WRKRKMERARQRDLEKTGGVSSST 148


>AT4G33380.1 | Symbols:  | unknown protein; Has 194 Blast hits to
           189 proteins in 23 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
           Eukaryotes - 10 (source: NCBI BLink). |
           chr4:16072064-16074605 FORWARD LENGTH=328
          Length = 328

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 10/144 (6%)

Query: 11  FSFRSATMVVCFLNIVTAIFLLHGFLASS---YTRNKLSTANSNSAQLSYIKESEEIRLA 67
            SF+  T++VCF NI+ A+F+L    ASS   Y+ N  +     + ++  ++ES  IR +
Sbjct: 18  LSFKRITLLVCFFNILIALFVLRFLYASSLHIYSNND-NVVKYTADEIRKMEESIRIRRS 76

Query: 68  MLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVDLSKRLKDLRSLNDAAGVKAL---- 123
             P  +++ V++++ EV +               VD  + L+ L+S  D + V  L    
Sbjct: 77  KEPTLILQLVKKLKHEVSTAESSTELSPNVKHKLVD--EILQRLKSFEDKSNVTQLREVV 134

Query: 124 EEWRKRKMERARQRQLEKNGTTSS 147
           E WR  K+E A++    +NG  S+
Sbjct: 135 ETWRNEKLEEAKELIQGQNGVNST 158


>AT4G33380.2 | Symbols:  | unknown protein; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: pollen tube. |
           chr4:16072064-16074605 FORWARD LENGTH=326
          Length = 326

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 11  FSFRSATMVVCFLNIVTAIFLLHGFLASS---YTRNKLSTANSNSAQLSYIKESEEIRLA 67
            SF+  T++VCF NI+ A+F+L    ASS   Y+ N  +     + ++  ++ES  IR +
Sbjct: 18  LSFKRITLLVCFFNILIALFVLRFLYASSLHIYSNND-NVVKYTADEIRKMEESIRIRRS 76

Query: 68  MLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVDLSKRLKDLRSLNDAAGVKAL---- 123
             P  LI +++ ++ EV +               VD  + L+ L+S  D + V  L    
Sbjct: 77  KEPT-LILQLK-LKHEVSTAESSTELSPNVKHKLVD--EILQRLKSFEDKSNVTQLREVV 132

Query: 124 EEWRKRKMERARQRQLEKNGTTSS 147
           E WR  K+E A++    +NG  S+
Sbjct: 133 ETWRNEKLEEAKELIQGQNGVNST 156