Miyakogusa Predicted Gene
- Lj6g3v0086460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0086460.1 Non Chatacterized Hit- tr|I1LAP5|I1LAP5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19620
PE,85.2,0,seg,NULL; NTF2,Nuclear transport factor 2; RRM_6,NULL;
NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROT,CUFF.57493.1
(470 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43960.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 296 2e-80
AT5G43960.2 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 223 2e-58
AT5G60980.2 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 139 5e-33
AT5G60980.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 135 5e-32
AT3G25150.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 132 4e-31
AT3G25150.2 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 132 7e-31
AT5G48650.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 125 9e-29
AT1G69250.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 77 2e-14
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fami... 69 8e-12
AT1G13730.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 64 3e-10
AT1G69250.2 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 60 4e-09
AT2G03640.2 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 56 7e-08
AT2G03640.1 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 55 7e-08
AT2G03640.4 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 55 1e-07
AT2G03640.3 | Symbols: | Nuclear transport factor 2 (NTF2) fami... 55 1e-07
>AT5G43960.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:17689154-17691653 REVERSE LENGTH=450
Length = 450
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 241/404 (59%), Gaps = 21/404 (5%)
Query: 1 MATPFPIPLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRIDGSARDTATAMLQN 60
MATP+P A QVG+YFVGQYY VLQ QP+ +HQFYS+ S +RIDG + +TA ++L
Sbjct: 1 MATPYP---GATQVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHI 57
Query: 61 HALVTSLSYTGIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFF 120
H +V SL++T IE+KT S+E + K+++ RR F+QTFFLAPQEKG+F
Sbjct: 58 HNMVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYF 117
Query: 121 VLNDIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEP-VSNYLLGEDIQAREFAATN 179
VL+D+F FV+E +HQ +L++ +++LN P+ +P VS+Y+L E +A ++
Sbjct: 118 VLSDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLEE--EASDYVNAV 175
Query: 180 EVKENGVVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEESAG 239
++K++ +V Y E Q P E ++ A+EE+ + + + V +H A EE G
Sbjct: 176 QIKDD-LVDKYSLQED--QHQPQHEDYEDEVAIEET-PREEVAVDVVHEHRAAPVEEPVG 231
Query: 240 EPQKHTYASILRVAKGQST-PSAASQPSHKHVSS--SEWDXXXXXXXXXXXXXXNAFERS 296
E K +YASIL+VAK +T P AA+QPS+ S +EWD ++S
Sbjct: 232 EKSKMSYASILKVAKEAATVPVAATQPSYNKSSQDINEWDQPMRTPSPQLAAPLAPIQQS 291
Query: 297 ETEGVEELPATEDED-------EIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRS 349
+ E ED E KSVYVRNL FKNFG I+PDGV +R+
Sbjct: 292 NSSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRT 351
Query: 350 RKDV-GVCYAFVEFEDMSGVHNAVQAGSVQIAGRQAYIEERRPN 392
RKDV GVCYAFVEFEDM+ V NA++A + + GRQ YIEERRPN
Sbjct: 352 RKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPN 395
>AT5G43960.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:17689154-17691220 REVERSE LENGTH=391
Length = 391
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 196/342 (57%), Gaps = 18/342 (5%)
Query: 63 LVTSLSYTGIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVL 122
+V SL++T IE+KT S+E + K+++ RR F+QTFFLAPQEKG+FVL
Sbjct: 1 MVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVL 60
Query: 123 NDIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEP-VSNYLLGEDIQAREFAATNEV 181
+D+F FV+E +HQ +L++ +++LN P+ +P VS+Y+L E +A ++ ++
Sbjct: 61 SDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLEE--EASDYVNAVQI 118
Query: 182 KENGVVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEESAGEP 241
K++ +V Y E Q P E ++ A+EE+ + + + V +H A EE GE
Sbjct: 119 KDD-LVDKYSLQED--QHQPQHEDYEDEVAIEET-PREEVAVDVVHEHRAAPVEEPVGEK 174
Query: 242 QKHTYASILRVAKGQST-PSAASQPSHKHVSS--SEWDXXXXXXXXXXXXXXNAFERSET 298
K +YASIL+VAK +T P AA+QPS+ S +EWD ++S +
Sbjct: 175 SKMSYASILKVAKEAATVPVAATQPSYNKSSQDINEWDQPMRTPSPQLAAPLAPIQQSNS 234
Query: 299 EGVEELPATEDED-------EIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRK 351
E ED E KSVYVRNL FKNFG I+PDGV +R+RK
Sbjct: 235 STYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRK 294
Query: 352 DV-GVCYAFVEFEDMSGVHNAVQAGSVQIAGRQAYIEERRPN 392
DV GVCYAFVEFEDM+ V NA++A + + GRQ YIEERRPN
Sbjct: 295 DVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPN 336
>AT5G60980.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:24543988-24546027 FORWARD LENGTH=460
Length = 460
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 174/393 (44%), Gaps = 33/393 (8%)
Query: 2 ATPFPIPLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRIDGSARDTATAMLQN- 60
A+P P A VG FV QYYH+L P VH+FY D+S + R D + T +Q
Sbjct: 6 ASPSP---GAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAI 62
Query: 61 HALVTSLSYTG--IEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKG 118
+ + SL Y EI+TA + E D N R+KF Q+FFLAPQ+KG
Sbjct: 63 NDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGND-NVRKKFSQSFFLAPQDKG 121
Query: 119 FFVLNDIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNYLLGE-DIQAREFAA 177
+FVLND+F F+EE QA + + + AP EP + E +++ A+
Sbjct: 122 YFVLNDVFRFLEEKEV-TAQARSVPINGTTRDVQAPI---EPERVVVSHEPEVEPEPVAS 177
Query: 178 TNEVKENGVVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEES 237
E + V Y S++ D E I + + L G+ AP
Sbjct: 178 IEEEDLDNVAEVYDPSDKDEGVVVDVEPIEPPTQISHNEILSVPQGD-----AP------ 226
Query: 238 AGEPQKHTYASILRVAKGQSTPSAASQPSHKHVSSSEWDXXXXXXXXXXXXXXNAFERSE 297
KH+YASIL+ K P+ +H + E S
Sbjct: 227 -----KHSYASILKQMKSSPAPT-----THVARNKPRPAPVNQKLTAPPAEPAARPEASA 276
Query: 298 TEGVEELPATEDEDEIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCY 357
E V + ED+ S+YVRNL FKNFG I+ +G+ +RS K G C+
Sbjct: 277 HENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCF 336
Query: 358 AFVEFEDMSGVHNAVQAGSVQIAGRQAYIEERR 390
FVEFE SG +A++A V I RQA +EE++
Sbjct: 337 GFVEFETSSGKQSALEASPVTIGDRQAVVEEKK 369
>AT5G60980.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:24543988-24546027 FORWARD LENGTH=459
Length = 459
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 174/393 (44%), Gaps = 34/393 (8%)
Query: 2 ATPFPIPLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRIDGSARDTATAMLQN- 60
A+P P A VG FV QYYH+L P VH+FY D+S + R D + T +Q
Sbjct: 6 ASPSP---GAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAI 62
Query: 61 HALVTSLSYTG--IEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKG 118
+ + SL Y EI+TA + E D N R+KF Q+FFLAPQ+KG
Sbjct: 63 NDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGND-NVRKKFSQSFFLAPQDKG 121
Query: 119 FFVLNDIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNYLLGE-DIQAREFAA 177
+FVLND+F F+EE QA + + + AP EP + E +++ A+
Sbjct: 122 YFVLNDVFRFLEEKEV-TAQARSVPINGTTRDVQAPI---EPERVVVSHEPEVEPEPVAS 177
Query: 178 TNEVKENGVVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEES 237
E + V Y S++ D E I + + L G+ AP
Sbjct: 178 IEEEDLDNVAEVYDPSDKDEGVVVDVEPIEPPTQISHNEILSVPQGD-----AP------ 226
Query: 238 AGEPQKHTYASILRVAKGQSTPSAASQPSHKHVSSSEWDXXXXXXXXXXXXXXNAFERSE 297
KH+YASIL+ K P+ +H + E S
Sbjct: 227 -----KHSYASILKQMKSSPAPT-----THVARNKPRPAPVNQKLTAPPAEPAARPEASA 276
Query: 298 TEGVEELPATEDEDEIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCY 357
E V + ED+ S+YVRNL FKNFG I+ +G+ +RS K G C+
Sbjct: 277 HENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQ-GFCF 335
Query: 358 AFVEFEDMSGVHNAVQAGSVQIAGRQAYIEERR 390
FVEFE SG +A++A V I RQA +EE++
Sbjct: 336 GFVEFETSSGKQSALEASPVTIGDRQAVVEEKK 368
>AT3G25150.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr3:9157161-9159362 REVERSE LENGTH=488
Length = 488
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 178/388 (45%), Gaps = 21/388 (5%)
Query: 9 LTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRIDGSARDTATAMLQN-HALVTSL 67
T VG FV QYYH+L PE VH+FY + S + R + + + T+ LQ + +L
Sbjct: 14 CTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMAL 73
Query: 68 SYTGI--EIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDI 125
Y I EI T + E KD + RR F QTFFLAPQE G+FVLND+
Sbjct: 74 GYGVISAEIATVDTQESHGGGYIVLVTGYLTGKD-SVRRTFSQTFFLAPQETGYFVLNDM 132
Query: 126 FHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNYLLGEDIQAREFAATNEVKENG 185
F F++E H + + +N+ + +N T + + + +D ++ N +
Sbjct: 133 FRFIDEGTVVHGNQIPV--NNVQAPVN---TYQDTAAAKEIPDDFVQEKYVQENHAVKQT 187
Query: 186 VVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEESAGEPQKHT 245
V + +E P + + +A EE++ + P++ + GE K +
Sbjct: 188 EVLSKSINEPEKVFTPSEDE--QVSAAEEALVTETVNEAPIEVQKVGESDSRTGEIPKRS 245
Query: 246 YASILRVAKGQSTPSAASQPSHKHVSSSEWDXXXXXXXXXXXXXXNAFERSETEGVEELP 305
YASI++V K + P +AS+ K + D E+S++ +
Sbjct: 246 YASIVKVMKENAAPMSASRTPTKVEPKKQEDQAIHIPLPTPLS-----EKSDSGANVAVN 300
Query: 306 ATEDEDEIK---SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEF 362
E+E S+Y++ L F+ FG IR +G+ +RS+K G C+ FVEF
Sbjct: 301 ENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQK--GFCFGFVEF 358
Query: 363 EDMSGVHNAVQAGSVQIAGRQAYIEERR 390
E S + +A++A V + G + +EE+R
Sbjct: 359 ESASSMQSAIEASPVMLNGHKVVVEEKR 386
>AT3G25150.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr3:9157161-9160052 REVERSE LENGTH=587
Length = 587
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 178/388 (45%), Gaps = 21/388 (5%)
Query: 9 LTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRIDGSARDTATAMLQN-HALVTSL 67
T VG FV QYYH+L PE VH+FY + S + R + + + T+ LQ + +L
Sbjct: 113 CTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMAL 172
Query: 68 SYTGI--EIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDI 125
Y I EI T + E KD + RR F QTFFLAPQE G+FVLND+
Sbjct: 173 GYGVISAEIATVDTQESHGGGYIVLVTGYLTGKD-SVRRTFSQTFFLAPQETGYFVLNDM 231
Query: 126 FHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNYLLGEDIQAREFAATNEVKENG 185
F F++E H + + +N+ + +N T + + + +D ++ N +
Sbjct: 232 FRFIDEGTVVHGNQIPV--NNVQAPVN---TYQDTAAAKEIPDDFVQEKYVQENHAVKQT 286
Query: 186 VVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEESAGEPQKHT 245
V + +E P + + +A EE++ + P++ + GE K +
Sbjct: 287 EVLSKSINEPEKVFTPSEDE--QVSAAEEALVTETVNEAPIEVQKVGESDSRTGEIPKRS 344
Query: 246 YASILRVAKGQSTPSAASQPSHKHVSSSEWDXXXXXXXXXXXXXXNAFERSETEGVEELP 305
YASI++V K + P +AS+ K + D E+S++ +
Sbjct: 345 YASIVKVMKENAAPMSASRTPTKVEPKKQEDQAIHIPLPTPLS-----EKSDSGANVAVN 399
Query: 306 ATEDEDEIK---SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEF 362
E+E S+Y++ L F+ FG IR +G+ +RS+K G C+ FVEF
Sbjct: 400 ENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQK--GFCFGFVEF 457
Query: 363 EDMSGVHNAVQAGSVQIAGRQAYIEERR 390
E S + +A++A V + G + +EE+R
Sbjct: 458 ESASSMQSAIEASPVMLNGHKVVVEEKR 485
>AT5G48650.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:19727279-19729533 FORWARD LENGTH=458
Length = 458
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 186/420 (44%), Gaps = 68/420 (16%)
Query: 8 PLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRI--DGSARDTAT--AMLQNHAL 63
PLT VG+ FV QYY++ N PE + +FY + S + R+ DG RD +T + +
Sbjct: 13 PLT---VGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGISEELKR 69
Query: 64 VTSLSYTGIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLN 123
+T EI + + E + + RRKF QTFFLAPQEKGFFVLN
Sbjct: 70 LTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNE-RSRRKFTQTFFLAPQEKGFFVLN 128
Query: 124 DIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNYLLGEDIQAREFAATNEVKE 183
DI FV N D+K N P TI+ GE + +T
Sbjct: 129 DILRFV----------------NDDAKDNVPETID--------GEVVSG--INSTTPTII 162
Query: 184 NGVVGNYGFSEQG-----------MQRGPDSEHIREDNAVEE---SIGLLQSSGNPVQDH 229
NG+ G SEQ + + D+E+ +++ V E + + + V D
Sbjct: 163 NGMKG----SEQAACVSVNPVCKEVSKPLDNENAKDNVLVPEIANEVARTEITCKEVADD 218
Query: 230 APAS--PEESAGEPQKHTYASILRVAKGQSTPSAASQPSHK-------HVSSSEWDXXXX 280
+ + P++ + K +YAS+L+V K + A S PS K H + S+
Sbjct: 219 SQKNYDPDDGLADAPKKSYASVLKVTKDKFGVPAVSLPSPKKIPKDQEHQAPSDPSTGQI 278
Query: 281 XXXXXXXXXXNAFERSETEGVEE-LPATEDED------EIKSVYVRNLXXXXXXXXXXXX 333
+ + E++ V E + A+E+ E S+YVR+L
Sbjct: 279 LKDQGQQASSDPSQVIESDTVSESVDASENGHNQEAVAEGTSIYVRHLPFNANIDMLEAE 338
Query: 334 FKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMSGVHNAVQAGSVQIAGRQAYIEERRPNS 393
FK FG I G+ + +++ +G Y FVEFE+ H A++A V+I G +A++EE+ S
Sbjct: 339 FKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIEASPVKIGGLRAFVEEKLSTS 398
>AT1G69250.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr1:26033163-26035301 FORWARD LENGTH=427
Length = 427
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 161/409 (39%), Gaps = 69/409 (16%)
Query: 1 MATPFPIPLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRID--GSARD-TATAM 57
MAT +P +A + FV QYYHVL P + Y DAS + R D G+ T+
Sbjct: 1 MATEGVVP-SAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA 59
Query: 58 LQNHALVTSLSYTGIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEK 117
+ H L T E+ + S KD NQRRKF Q F+LA Q
Sbjct: 60 INKHILSCDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKD-NQRRKFSQMFYLARQNT 118
Query: 118 GFFVLNDIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNY-------LLGEDI 170
VLND+ +V+++ S ++ + I P L +++
Sbjct: 119 -LVVLNDMLRYVDQED----------SSTTETPCEPVTEIVRPADGLKKAEKTELKQKNV 167
Query: 171 QAREFAATNEVKENGVVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQS----SGNPV 226
+ E + V++N + G +Q ++ ++ + E +A + G +S G+
Sbjct: 168 ASVEKSVNAAVEKNAAPLDNGKMKQS-EKAVITQKVTEPDAAPQPDGAKRSFADIVGSMA 226
Query: 227 QDHAPASPEESAGEP-QKHTYASILRVAKGQSTPSAASQPSHKHVSSSEWDXXXXXXXXX 285
++ AP + P QK Y R A P+ S+ K+
Sbjct: 227 KNAAPFQVKSPVQAPVQKPKYVGQPRAAAAPQKPAYVSKSIKKN---------------- 270
Query: 286 XXXXXNAFERSETEGVEELPATEDEDEIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGV 345
+ V E+P T S++V NL FK+FG I+ +G+
Sbjct: 271 ------------DQKVIEVPGT-------SIFVANLPLNAMPPQLFELFKDFGPIKENGI 311
Query: 346 VIRSRKDVG--VCYAFVEFEDMSGVHNAVQAGS---VQIAGRQAYIEER 389
+RS + VC+ F+ FE ++ V + +QA +A R+ ++E+
Sbjct: 312 QVRSSRGNANPVCFGFISFETVASVQSVLQAAKNTPFMLADRKLRVKEK 360
>AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=1294
Length = 1294
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 8 PLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARDTATAMLQNHALVT 65
PL VG F QYY+ LQN PE +++ Y D ST+ R +DG+ R + ++ +
Sbjct: 275 PLRHITVGDEFARQYYNTLQNAPENLYKLYKDKSTISRPGLDGTMR--VFTLSKDLKWRS 332
Query: 66 SLSYTGIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQR--RKFMQTFFLAPQEKGFFVLN 123
S+ ++I + S + +N+R R F Q FFL PQEKG+ V
Sbjct: 333 PGSFDSVKITSVTSQDSLKQGILVVVYGYLT---FNERPARHFTQVFFLVPQEKGYIVCT 389
Query: 124 DIFHFVE 130
D+F FV+
Sbjct: 390 DMFRFVD 396
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 14 VGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARD-TATAMLQNHALVTSLSYT 70
+ +F YY+ LQN PE + +Y D S + R +DG+ R T ++++ +++ +
Sbjct: 944 IAAFFSEHYYNNLQNSPEILPGYYKDVSKITRPGLDGTMRSSTLPDIIEDLDMLSPGGFD 1003
Query: 71 GIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQR--RKFMQTFFLAPQEKGFFVLNDIFHF 128
+E+ + S + +N+R R F Q F APQEKG FV D+F F
Sbjct: 1004 SVEVTSVMSQDSHDKGIRVAVDGYFT---FNERPARNFTQNFTFAPQEKGLFVSTDMFKF 1060
Query: 129 V 129
V
Sbjct: 1061 V 1061
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 300 GVEELPATEDEDEIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAF 359
G+ E AT ++ V+NL FK FG IR GV +R+++ Y F
Sbjct: 1062 GIPEANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSF--SYGF 1119
Query: 360 VEFEDMSGVHNAVQAGSVQIAGRQAYIEERRPN 392
VEF++ + A++A V I R Y+E++RP+
Sbjct: 1120 VEFKEENAAQRAIKASPVTIDLRSVYVEKKRPD 1152
>AT1G13730.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr1:4710519-4712332 FORWARD LENGTH=428
Length = 428
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 14 VGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARDTATAMLQNHALVT-SLSYT 70
+G FV +YY++L P VHQFY D S + R DG + N +++ +
Sbjct: 15 IGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMSFDYEIS 74
Query: 71 GIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDIFHFVE 130
I+I TA S +K+ QR +F Q+FFL P +FVLND+F +V
Sbjct: 75 KIQILTADSQASYMNGVVTLVTGLLTVKE-GQRMRFSQSFFLVPLNGSYFVLNDVFRYVA 133
Query: 131 ED 132
++
Sbjct: 134 DE 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 315 SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMSGVHNAVQA 374
+++V NL FK FG I DG+ +RS + G C+ FV F V +QA
Sbjct: 278 TIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQA 337
Query: 375 ---GSVQIAGRQAYIEERRPNSN 394
+++I R+ IEE+R N++
Sbjct: 338 HKESAIRIGNRRVSIEEKRGNND 360
>AT1G69250.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr1:26033163-26035007 FORWARD LENGTH=389
Length = 389
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 138/358 (38%), Gaps = 48/358 (13%)
Query: 1 MATPFPIPLTAAQVGTYFVGQYYHVLQNQPEFVHQFYSDASTMLRIDGSARD---TATAM 57
MAT +P +A + FV QYYHVL P + Y DAS + R D + T+
Sbjct: 1 MATEGVVP-SAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA 59
Query: 58 LQNHALVTSLSYTGIEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEK 117
+ H L T E+ + S KD NQRRKF Q F+LA ++
Sbjct: 60 INKHILSCDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKD-NQRRKFSQMFYLA-RQN 117
Query: 118 GFFVLNDIFHFVEEDHFPHHQAVFLAQSNLDSKLNAPSTINEPVSNYLLGEDIQAREFAA 177
VLND+ +V+++ DS + T EPV+ + D + A
Sbjct: 118 TLVVLNDMLRYVDQE---------------DS--STTETPCEPVTEIVRPAD--GLKKAE 158
Query: 178 TNEVKENGVVGNYGFSEQGMQRGPDSEHIREDNAVEESIGLLQSSGNPVQDHAPASPEES 237
E+K+ N E+ + E NA G ++ S V P ++
Sbjct: 159 KTELKQK----NVASVEKSVNAA------VEKNAAPLDNGKMKQSEKAVITQKVTEP-DA 207
Query: 238 AGEPQ--KHTYASILRVAKGQSTPSAASQPSHKHVSSSEW--DXXXXXXXXXXXXXXNAF 293
A +P K ++A I+ + P P V ++ +
Sbjct: 208 APQPDGAKRSFADIVGSMAKNAAPFQVKSPVQAPVQKPKYVGQPRAAAAPQKPAYVSKSI 267
Query: 294 ERSETEGVEELPATEDEDEIKSVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRK 351
++++ + V E+P T S++V NL FK+FG I+ +G+ +RS +
Sbjct: 268 KKND-QKVIEVPGT-------SIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSR 317
>AT2G03640.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr2:1104525-1106418 REVERSE LENGTH=423
Length = 423
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 315 SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMSGVHNAVQA 374
S++V NL FK+FG IR DG+ +RS + C FV FE+ V N QA
Sbjct: 277 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQA 336
Query: 375 ---GSVQIAGRQAYIEERRPNSN 394
++I R+A IEE+R +N
Sbjct: 337 HRESPIRIGNRRASIEEKRGGNN 359
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 14 VGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARDTATAMLQNHALVTSLSYTG 71
VG FV +YY+ L + VH+FY + S + R +DG T ++ + + S+ Y
Sbjct: 15 VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73
Query: 72 --IEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDIFHFV 129
IEI TA S + I + RRKF Q+FFL + +FVLND F +V
Sbjct: 74 SRIEILTADS-QSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYV 132
Query: 130 EED 132
++
Sbjct: 133 SDE 135
>AT2G03640.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr2:1104525-1106418 REVERSE LENGTH=422
Length = 422
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 315 SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMSGVHNAVQA 374
S++V NL FK+FG IR DG+ +RS + C FV FE+ V N QA
Sbjct: 276 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQA 335
Query: 375 ---GSVQIAGRQAYIEERRPNSN 394
++I R+A IEE+R +N
Sbjct: 336 HRESPIRIGNRRASIEEKRGGNN 358
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 14 VGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARDTATAMLQNHALVTSLSYTG 71
VG FV +YY+ L + VH+FY + S + R +DG T ++ + + S+ Y
Sbjct: 15 VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73
Query: 72 --IEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDIFHFV 129
IEI TA S + I + RRKF Q+FFL + +FVLND F +V
Sbjct: 74 SRIEILTADS-QSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYV 132
Query: 130 EED 132
++
Sbjct: 133 SDE 135
>AT2G03640.4 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr2:1104525-1106418 REVERSE LENGTH=453
Length = 453
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 14 VGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARDTATAMLQNHALVTSLSYTG 71
VG FV +YY+ L + VH+FY + S + R +DG T ++ + + S+ Y
Sbjct: 15 VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73
Query: 72 --IEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDIFHFV 129
IEI TA S + I + RRKF Q+FFL + +FVLND F +V
Sbjct: 74 SRIEILTADS-QSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYV 132
Query: 130 EED 132
++
Sbjct: 133 SDE 135
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 315 SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMSGVHNAVQA 374
S++V NL FK+FG IR DG+ +RS + C FV FE+ V N QA
Sbjct: 276 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQA 335
Query: 375 ---GSVQIAGRQAYIEERR 390
++I R+A IEE+R
Sbjct: 336 HRESPIRIGNRRASIEEKR 354
>AT2G03640.3 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr2:1104525-1106418 REVERSE LENGTH=454
Length = 454
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 14 VGTYFVGQYYHVLQNQPEFVHQFYSDASTMLR--IDGSARDTATAMLQNHALVTSLSYTG 71
VG FV +YY+ L + VH+FY + S + R +DG T ++ + + S+ Y
Sbjct: 15 VGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIV-TIKSLKGINDQIMSIDYKS 73
Query: 72 --IEIKTAQSLEXXXXXXXXXXXXXXQIKDYNQRRKFMQTFFLAPQEKGFFVLNDIFHFV 129
IEI TA S + I + RRKF Q+FFL + +FVLND F +V
Sbjct: 74 SRIEILTADS-QSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYV 132
Query: 130 EED 132
++
Sbjct: 133 SDE 135
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 315 SVYVRNLXXXXXXXXXXXXFKNFGRIRPDGVVIRSRKDVGVCYAFVEFEDMSGVHNAVQA 374
S++V NL FK+FG IR DG+ +RS + C FV FE+ V N QA
Sbjct: 277 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQA 336
Query: 375 ---GSVQIAGRQAYIEERR 390
++I R+A IEE+R
Sbjct: 337 HRESPIRIGNRRASIEEKR 355