Miyakogusa Predicted Gene

Lj6g3v0085390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0085390.1 Non Chatacterized Hit- tr|K4BYD3|K4BYD3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,44.17,1e-18,seg,NULL,CUFF.57482.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00930.1 | Symbols: CIP4.1 | COP1-interacting protein 4.1 | c...    78   1e-15
AT5G37190.1 | Symbols: CIP4 | COP1-interacting protein 4 | chr5:...    75   9e-15
AT2G02770.1 | Symbols:  | 4'-phosphopantetheinyl transferase sup...    69   6e-13
AT4G00580.1 | Symbols:  | COP1-interacting protein-related | chr...    68   2e-12
AT1G30060.1 | Symbols:  | COP1-interacting protein-related | chr...    67   2e-12
AT4G00920.1 | Symbols:  | COP1-interacting protein-related | chr...    67   3e-12
AT2G01800.1 | Symbols:  | COP1-interacting protein-related | chr...    65   1e-11
AT2G01800.3 | Symbols:  | COP1-interacting protein-related | chr...    65   1e-11
AT2G01800.2 | Symbols:  | COP1-interacting protein-related | chr...    65   2e-11
AT1G55860.1 | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:...    57   3e-09

>AT4G00930.1 | Symbols: CIP4.1 | COP1-interacting protein 4.1 |
           chr4:396558-400734 FORWARD LENGTH=1133
          Length = 1133

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF++TNLDT LA+PV++ + +SD K ++  EH   FP+ G I+I  +KV R    Y  S+
Sbjct: 15  VFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSE 74

Query: 84  SMSVTNAFNGFNDGWFLTVEA 104
           S++V  AF+G +  WF+ ++A
Sbjct: 75  SLNVCKAFDGISTDWFMYIDA 95


>AT5G37190.1 | Symbols: CIP4 | COP1-interacting protein 4 |
           chr5:14723362-14726694 REVERSE LENGTH=876
          Length = 876

 Score = 75.1 bits (183), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 50/81 (61%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF++TNLDT L + V++ + +SD K R+  EH   FP+ G I I  +KV R    Y  SD
Sbjct: 15  VFVETNLDTRLILHVHKDEIISDFKDRLLKEHKQVFPEIGEIQISALKVKRRRKFYHFSD 74

Query: 84  SMSVTNAFNGFNDGWFLTVEA 104
           S+ V  AF+G +  WF+ ++A
Sbjct: 75  SLHVCKAFDGISRNWFMYIDA 95


>AT2G02770.1 | Symbols:  | 4'-phosphopantetheinyl transferase
           superfamily | chr2:775657-779786 REVERSE LENGTH=661
          Length = 661

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF+ TN+DT L + + + DTVS  K++I  EH  CFP FG+I I  +KV+  G +Y L D
Sbjct: 9   VFVTTNMDTRLGLLMDKDDTVSTFKEKICKEHEQCFPSFGNITISALKVNCCGQLYHLVD 68

Query: 84  SMSVTNAFNGFNDGWFLTV 102
           S+++  AF       F+ V
Sbjct: 69  SLTLNTAFQSNESFLFVDV 87


>AT4G00580.1 | Symbols:  | COP1-interacting protein-related |
           chr4:248713-250258 FORWARD LENGTH=317
          Length = 317

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF+ T++DT L + +  HD+VS  K +   EH  CFP  G+I +  +KV+ +G  Y LSD
Sbjct: 9   VFVKTSIDTRLGLLLDSHDSVSSFKDKFCKEHELCFPSVGNITVSALKVNVSGNDYHLSD 68

Query: 84  SMSVTNAFNGF-NDGWFLTVE 103
           SM +  A  G  N+ +FL+V+
Sbjct: 69  SMILKKALQGLSNEDFFLSVD 89


>AT1G30060.1 | Symbols:  | COP1-interacting protein-related |
           chr1:10545087-10545906 REVERSE LENGTH=176
          Length = 176

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF+ T++DT + + +   D+VS  K +I  EH  CFP  G+I I  +KV+  G  Y LSD
Sbjct: 10  VFVKTSIDTRMGLLLDSDDSVSAFKDKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 84  SMSVTNAFNGF-NDGWFLTV 102
            M +  A  G  N  WFL+V
Sbjct: 70  CMILKTALQGLSNKDWFLSV 89


>AT4G00920.1 | Symbols:  | COP1-interacting protein-related |
           chr4:393767-395382 FORWARD LENGTH=314
          Length = 314

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF++TNLDT L V +   D VS  K++I  EH +CFP FG+I I  +KV   G  Y L D
Sbjct: 15  VFVETNLDTRLGVLMERDDIVSTFKEKICKEHETCFPSFGNITISALKVKCGGQFYHLVD 74

Query: 84  SMSVTNAFNGFNDGWFLTVEASSLGEEATQSDQLITHASP 123
           S+ +  AF       FL V+   + E+     +++T  +P
Sbjct: 75  SLILNTAFPSKE--TFLVVDVLRVEEKG----KMLTGETP 108


>AT2G01800.1 | Symbols:  | COP1-interacting protein-related |
           chr2:343766-345254 REVERSE LENGTH=304
          Length = 304

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF+ T++DT LA+ +   D+V   K++I  EH  CFP  G+I I  +KV+  G  Y LSD
Sbjct: 10  VFVKTSIDTRLALLLDSDDSVYAFKEKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 84  SMSVTNAFNGF-NDGWFLTVE 103
              +  A  G  N  WFL+V+
Sbjct: 70  CTILKTALQGLRNKDWFLSVD 90


>AT2G01800.3 | Symbols:  | COP1-interacting protein-related |
           chr2:343766-345254 REVERSE LENGTH=281
          Length = 281

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF+ T++DT LA+ +   D+V   K++I  EH  CFP  G+I I  +KV+  G  Y LSD
Sbjct: 10  VFVKTSIDTRLALLLDSDDSVYAFKEKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 84  SMSVTNAFNGF-NDGWFLTVE 103
              +  A  G  N  WFL+V+
Sbjct: 70  CTILKTALQGLRNKDWFLSVD 90


>AT2G01800.2 | Symbols:  | COP1-interacting protein-related |
           chr2:343766-345254 REVERSE LENGTH=249
          Length = 249

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF+ T++DT LA+ +   D+V   K++I  EH  CFP  G+I I  +KV+  G  Y LSD
Sbjct: 10  VFVKTSIDTRLALLLDSDDSVYAFKEKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 84  SMSVTNAFNGF-NDGWFLTVE 103
              +  A  G  N  WFL+V+
Sbjct: 70  CTILKTALQGLRNKDWFLSVD 90


>AT1G55860.1 | Symbols: UPL1 | ubiquitin-protein ligase 1 |
           chr1:20879900-20895393 REVERSE LENGTH=3930
          Length = 3930

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query: 24  VFIDTNLDTHLAVPVYEHDTVSDLKKRIESEHPSCFPKFGHIHIHGIKVHRTGYIYDLSD 83
           VF +T+L T + + V    T +D K+++E  H SC    G I +HG+ V R    Y L +
Sbjct: 9   VFAETSLGTRIVMAVPLDITAADFKRKLEKTHASCLSSVGEIEVHGLMVKRKSRFYHLVE 68

Query: 84  SMSVTNAFNGFNDGWFLTVEA 104
           S+ +   F      WF+  EA
Sbjct: 69  SVPIRYIFLDNQKPWFIHAEA 89