Miyakogusa Predicted Gene
- Lj6g3v0084360.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0084360.2 Non Chatacterized Hit- tr|I1KTJ9|I1KTJ9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,42.64,2e-19,RRM,RNA
recognition motif domain; RNA recognition motif,RNA recognition motif
domain; RRM_1,RNA reco,CUFF.57495.2
(125 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 199 4e-52
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 100 2e-22
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 99 1e-21
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 99 1e-21
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 97 3e-21
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 97 4e-21
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 96 7e-21
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 3e-18
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 3e-18
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 3e-18
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 86 4e-18
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 3e-16
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 3e-16
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-15
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 75 1e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 2e-14
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 2e-14
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 2e-14
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 3e-14
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 3e-14
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 3e-14
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 3e-14
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 74 3e-14
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 73 4e-14
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 73 5e-14
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 73 5e-14
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 72 1e-13
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 1e-13
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 70 5e-13
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 6e-13
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 9e-13
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 68 2e-12
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 68 2e-12
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 66 5e-12
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 65 8e-12
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-11
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-11
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 2e-11
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-11
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 64 2e-11
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 63 6e-11
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 62 7e-11
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 62 7e-11
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 62 7e-11
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 62 8e-11
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 62 1e-10
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 61 2e-10
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 61 2e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 61 2e-10
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 60 3e-10
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 60 3e-10
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 60 3e-10
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-10
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 60 4e-10
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 60 4e-10
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 60 4e-10
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-10
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 59 6e-10
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 59 7e-10
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-10
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-10
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 59 1e-09
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-09
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 58 2e-09
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 58 2e-09
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 2e-09
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 2e-09
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 2e-09
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 2e-09
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 2e-09
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 57 2e-09
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-09
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-09
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 57 3e-09
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-09
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 57 4e-09
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-09
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-09
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-09
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 56 7e-09
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 55 8e-09
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 55 8e-09
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 55 2e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 4e-08
AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-08
AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 5e-08
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 5e-08
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 5e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-08
AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-08
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-08
AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-08
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 52 6e-08
AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-08
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-08
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 52 1e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 1e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 1e-07
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 52 1e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 51 1e-07
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149... 51 2e-07
AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149... 51 2e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 51 2e-07
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-07
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 50 3e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-07
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-07
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 50 4e-07
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 5e-07
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 49 8e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 48 1e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 1e-06
AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding pr... 48 2e-06
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 48 2e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 48 2e-06
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 47 2e-06
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 3e-06
AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 47 4e-06
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 47 4e-06
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 47 4e-06
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 46 5e-06
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 46 5e-06
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 46 6e-06
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 46 7e-06
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 46 8e-06
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 45 8e-06
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 199 bits (506), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 110/125 (88%), Gaps = 1/125 (0%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKP-KEPLYPETEHKLFVGNLSWTVTSES 59
MS VEDCN +I+NLDG E+LGR L+VN +DKPKP KEPLYPETEHKLFVGNLSWTVTSES
Sbjct: 133 MSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSES 192
Query: 60 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 119
L F+E G VVGARV++DG+TGRSRGYGFVCYS ++E+ETAL SL+ ELEGRAIRV+L
Sbjct: 193 LAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNL 252
Query: 120 AEGKR 124
A+GK+
Sbjct: 253 AQGKK 257
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KL+ GNL + V S +L Q+ Q++ VLY+ +TG+SRG+ FV S + + +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 105 LNNVELEGRAIRVSLAEGKR 124
L+ E GRA++V+ A+ +
Sbjct: 146 LDGTEYLGRALKVNFADKPK 165
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 5/125 (4%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLS----DKPKPKEPLYPETEHKLFVGNLSWTVT 56
MS V++ T +E + + GR L VN + +P+ + P E +++VGNL W V
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVD 256
Query: 57 SESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIR 116
+ L Q+F E+G VV ARV+YD ETGRSRG+GFV S EL A+ +L+ LEGRAIR
Sbjct: 257 NGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
Query: 117 VSLAE 121
V++AE
Sbjct: 317 VNVAE 321
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P E KLFVGNL++ V S++L +F++ GTV A V+Y+ ET +SRG+GFV S E E
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 100 TALISLNNVELEGRAIRVSLA 120
TA+ N +L GR + V+ A
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKA 226
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP----------LYPETEHKLFVGN 50
M VED N V+E L+G GR ++VN+++KP P + ++ +K++VGN
Sbjct: 124 MKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGN 183
Query: 51 LSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVEL 110
L+ TVT E L +F E G VV A+V T +S G+GFV +S ++E A+++LNN L
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 111 EGRAIRVSLA 120
EG+ IRV+ A
Sbjct: 244 EGQKIRVNKA 253
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 30 DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGF 89
+KP +P E ++++GN+ TVT+E L ++ +E+G V +V+YD +GRSR +GF
Sbjct: 63 EKPAALDP-SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 90 VCYSKRSELETALISLNNVELEGRAIRVSLAE 121
+ + LN +EGR I+V++ E
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP----------LYPETEHKLFVGN 50
M VED N V+E L+G GR ++VN+++KP P + ++ +K++VGN
Sbjct: 124 MKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGN 183
Query: 51 LSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVEL 110
L+ TVT E L +F E G VV A+V T +S G+GFV +S ++E A+++LNN L
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 111 EGRAIRVSLA 120
EG+ IRV+ A
Sbjct: 244 EGQKIRVNKA 253
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 30 DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGF 89
+KP +P E ++++GN+ TVT+E L ++ +E+G V +V+YD +GRSR +GF
Sbjct: 63 EKPAALDP-SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 90 VCYSKRSELETALISLNNVELEGRAIRVSLAE 121
+ + LN +EGR I+V++ E
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 5/125 (4%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLS----DKPKPKEPLYPETEHKLFVGNLSWTVT 56
MS VE+ +E + E GR L VN + +P+ ++P + +++VGNL W V
Sbjct: 161 MSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPRVYDAAFRIYVGNLPWDVD 219
Query: 57 SESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIR 116
S L ++F E+G VV ARV+ D ETGRSRG+GFV S +E+ A+ +L+ LEGRAI+
Sbjct: 220 SGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIK 279
Query: 117 VSLAE 121
V++AE
Sbjct: 280 VNVAE 284
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P E KLFVGNL + V S++L +F++ GTV + V+Y+ +T +SRG+GFV S E E
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 100 TALISLNNVELEGRAIRVSLA 120
A+ N+ E+ GR + V+ A
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRA 189
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 12/132 (9%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP------------LYPETEHKLFV 48
M +E+ ++ + + GRT++VN + P+ E Y ++ HK++
Sbjct: 164 MGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYA 223
Query: 49 GNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV 108
GNL W +TS+ L F + V+GA+V+Y+ TGRSRG+GF+ + +++AL ++N V
Sbjct: 224 GNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283
Query: 109 ELEGRAIRVSLA 120
E+EGRA+R++LA
Sbjct: 284 EVEGRALRLNLA 295
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E +L+VGNL +T+TS L Q+F E GTVV +++YD T RSRG+GFV E + A+
Sbjct: 115 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 174
Query: 103 ISLNNVELEGRAIRVSLAEGKR 124
N+ ++ GR ++V+ E R
Sbjct: 175 QMFNSSQIGGRTVKVNFPEVPR 196
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 22/145 (15%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPE------------------- 41
MS V + + +G E GR LRVN P +E +
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGS 198
Query: 42 ---TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
+ ++++VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV Y E+
Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
Query: 99 ETALISLNNVELEGRAIRVSLAEGK 123
+ A+ SL+ +L+GR IRVS AE +
Sbjct: 259 QNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 28 LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGY 87
+D PKE + + KLFVGNL + V S L Q+F+ G V V+YD TGRSRG+
Sbjct: 76 FADVAPPKEQSF-SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 88 GFVCYSKRSELETALISLNNVELEGRAIRVS 118
GFV S SE+E A N EL+GR +RV+
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 104 SLNNVELEGRAIRVSLAEGK 123
SLN +L+GR IRVS AE +
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 105 LNNVELEGRAIRVS 118
N E EGR +RV+
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 104 SLNNVELEGRAIRVSLAEGK 123
SLN +L+GR IRVS AE +
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 105 LNNVELEGRAIRVS 118
N E EGR +RV+
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 104 SLNNVELEGRAIRVSLAEGK 123
SLN +L+GR IRVS AE +
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 105 LNNVELEGRAIRVS 118
N E EGR +RV+
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 104 SLNNVELEGRAIRVSLAEGK 123
SLN +L+GR IRVS AE +
Sbjct: 338 SLNGADLDGRQIRVSEAEAR 357
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 148
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 14/130 (10%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLS--------DKPK-----PKEPLYPETEHKLF 47
M + I +LDG E GR +RV S P+ PK+ L E++HK++
Sbjct: 156 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 215
Query: 48 VGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNN 107
VGNL W + L F ++GT+V RVL+D +TGR+R + F+ ++ E + AL S N
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNG 274
Query: 108 VELEGRAIRV 117
+ EGR I V
Sbjct: 275 TQYEGRRIIV 284
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 36 EPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKR 95
EP+ +L+V N+ + L+ +FQ +GTV+ V + +TG SRG G+V
Sbjct: 100 EPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSI 159
Query: 96 SELETALISLNNVELEGRAIRV 117
+ + A+ SL+ E+ GR +RV
Sbjct: 160 NSAKIAIASLDGTEVGGREMRV 181
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 14/130 (10%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLS--------DKPK-----PKEPLYPETEHKLF 47
M + I +LDG E GR +RV S P+ PK+ L E++HK++
Sbjct: 157 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 216
Query: 48 VGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNN 107
VGNL W + L F ++GT+V RVL+D +TGR+R + F+ ++ E + AL S N
Sbjct: 217 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNG 275
Query: 108 VELEGRAIRV 117
+ EGR I V
Sbjct: 276 TQYEGRRIIV 285
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 36 EPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLY-DGETGRSRGYGFVCYSK 94
EP+ +L+V N+ + L+ +FQ +GTV+ V+ + +TG SRG G+V
Sbjct: 100 EPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGS 159
Query: 95 RSELETALISLNNVELEGRAIRV 117
+ + A+ SL+ E+ GR +RV
Sbjct: 160 INSAKIAIASLDGTEVGGREMRV 182
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLS---DKPKPKEP-----LYP-ETEHKLFVGNL 51
M+ E+ I+ D + GR + V+ + KP PK P P +T HKL+V NL
Sbjct: 142 MASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNL 201
Query: 52 SWTVTSESLIQVFQEYG-TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVEL 110
+W S L ++F V ARV++ GRS GYGFV ++ R E E A+ LN E+
Sbjct: 202 AWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEI 261
Query: 111 EGRAIRVSLA 120
GR I + +
Sbjct: 262 MGRPITLKFS 271
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
+ KLFV NL W+++ + ++F + GTV ++ + G++RG+ FV + E + A+
Sbjct: 94 KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAI 152
Query: 103 ISLNNVELEGRAIRVSLA 120
+ ++ GR I VS A
Sbjct: 153 DKFDTFQVSGRIISVSFA 170
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 55/81 (67%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
+ E++ F+G L+WT + L F++YG +V A+V+ D +GRSRG+GF+ + ++ ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 101 ALISLNNVELEGRAIRVSLAE 121
A+ ++N ++L+GR I V A+
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQ 84
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 46/77 (59%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
KLFVG LSW SL Q F +G V A V+ D ETGRSRG+GFV +S A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 104 SLNNVELEGRAIRVSLA 120
++ EL GR IRV+LA
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 46/77 (59%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
KLFVG LSW SL Q F +G V A V+ D ETGRSRG+GFV +S A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 104 SLNNVELEGRAIRVSLA 120
++ EL GR IRV+LA
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 100 TALISLNNVELEGRAIRVSLAEGKRS 125
A+ +N EL+GR I V+ A+ + S
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGS 87
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 100 TALISLNNVELEGRAIRVSLAE 121
A+ +N EL+GR I V+ A+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 100 TALISLNNVELEGRAIRVSLAE 121
A+ +N EL+GR I V+ A+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
+ E++ FVG L+W +L F +YG V+ ++++ D ETGRSRG+GFV + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 101 ALISLNNVELEGRAIRVSLAE 121
A+ +N +L+GR+I V+ A+
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
+ E++ FVG L+W +L F +YG V+ ++++ D ETGRSRG+GFV + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 101 ALISLNNVELEGRAIRVSLAE 121
A+ +N +L+GR+I V+ A+
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 25 RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRS 84
+V+LS P + + + KLF+G +++++ +SL + F +YG VV RV+ D ETGRS
Sbjct: 22 QVSLS-SPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80
Query: 85 RGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
RG+GFV ++ +A+ +L+ +L GR ++V+ A
Sbjct: 81 RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I +L+G+ G+ ++VN + +E + +FVG+LS VT +L Q F + +
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQRED--TSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + + +TA+ +N L R IR + A
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 69.7 bits (169), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L+G+ G+ ++VN + +E + +FVG+LS VT +L F + +
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQRED--TSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + + +TA+ +N + R IR + A
Sbjct: 175 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+++VGNLS T T + L + F YG VV A V+ D T RSRG+GFV YS SE E A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 105 LNNVELEGRAIRVSL 119
++ EL GR + V L
Sbjct: 64 MDGKELNGRRVSVKL 78
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G LSW+V +SL F +G V R+ YD +GRSRG+GFV +++ + +A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 105 LNNVELEGRAIRVSLA 120
++ L GR +R+S A
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 67.8 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I +L+G+ G+ ++VN + +E + +FVG+LS VT L F Y T
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQRED--TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + + +TA+ + L R IR + A
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 67.8 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I +L+G+ G+ ++VN + +E + +FVG+LS VT L F Y T
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQRED--TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + + +TA+ + L R IR + A
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G LS+ T + L + F + G VV A+++ D + RS+G+GFV ++ E + AL+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
N +L GR I V A+ K+S
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG +S++ L + F +YG VV A+++ D ETGRSRG+ FV ++ E A+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 105 LNNVELEGRAIRVSLA 120
L+ +L GR IRV+ A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK-----PKEPLYPETEHKLFVGNLSWTV 55
M+ E+ T +++L+ E+ GR L+V+ + K P+E P LFV NL++
Sbjct: 81 MASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEA 140
Query: 56 TSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 114
++ L + F + G VV V++ RS GYGFV + + + E ALI + GR
Sbjct: 141 RAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRP 200
Query: 115 IRVS 118
IR++
Sbjct: 201 IRLA 204
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARV-LYDGETGRSRGYGFVCYSKRSELETALI 103
+L N+ WT T E + +F++YG+V+ + ++ E R+RG F+ + E TAL
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE--RNRGLVFIEMASPEEAATALK 92
Query: 104 SLNNVELEGRAIRV 117
SL + E EGR ++V
Sbjct: 93 SLESCEYEGRRLKV 106
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK-----PKEPLYPETEHKLFVGNLSWTV 55
M+ E+ T +++L+ E+ GR L+V+ + K P+E P LFV NL++
Sbjct: 141 MASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEA 200
Query: 56 TSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 114
++ L + F + G VV V++ RS GYGFV + + + E ALI + GR
Sbjct: 201 RAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRP 260
Query: 115 IRVSLAEGKR 124
IR LA+ K+
Sbjct: 261 IR--LAKSKQ 268
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARV-LYDGETGRSRGYGFVCYSKRSELETALI 103
+L N+ WT T E + +F++YG+V+ + ++ E R+RG F+ + E TAL
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE--RNRGLVFIEMASPEEAATALK 152
Query: 104 SLNNVELEGRAIRV 117
SL + E EGR ++V
Sbjct: 153 SLESCEYEGRRLKV 166
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+H +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV +++ SE A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 102 LISLNNVELEGRAIRVSLAEGKRS 125
+ +N + R +R+S A K++
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKN 198
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+H +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV +++ SE A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 102 LISLNNVELEGRAIRVSLAEGKRS 125
+ +N + R +R+S A K++
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKN 198
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L+G+ G+ ++VN + +E + +FVG+LS VT +L F + +
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQRED--TSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 71 VG----ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + + +TA+ +N + R IR + A
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E ++FVG LSW VT L F YG + +++ +TGR RG+GF+ ++ R + A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 103 ISLNNVELEGRAIRVSLAEGK 123
++ EL + I V+ AE K
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E ++FVG LSW VT L F YG + +++ +TGR RG+GF+ ++ R + A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 103 ISLNNVELEGRAIRVSLAEGK 123
++ EL + I V+ AE K
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+LS V+ L + F E Y +V A+V+ D TGRS+GYGFV + +E A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N V+ RA+R+ A +++
Sbjct: 259 MNGVKCSSRAMRIGPATPRKT 279
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.4 bits (150), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 42/72 (58%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L TVT L + F + G VV RV D T RS GYG+V Y+ + AL L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 106 NNVELEGRAIRV 117
N + L GRAIRV
Sbjct: 107 NFMALNGRAIRV 118
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEH------------KLFVGNL 51
+D ++ L+GK F + V + K +E L + E L+V NL
Sbjct: 275 DDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNL 334
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
+VT + L + F +GT+ +V+ D +G SRG GFV +S E A+ +N +
Sbjct: 335 DESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 112 GRAIRVSLAEGK 123
+ + V+LA+ K
Sbjct: 394 TKPLYVALAQRK 405
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++V NLS +++ E L +VF E+G ++ DGE G+S+G+GFV + + A+ +L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 106 NNVELEGRAIRVSLAEGK 123
N + + V A+ K
Sbjct: 285 NGKTFDDKEWFVGKAQKK 302
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.4 bits (150), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 42/72 (58%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L TVT L + F + G VV RV D T RS GYG+V Y+ + AL L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 106 NNVELEGRAIRV 117
N + L GRAIRV
Sbjct: 107 NFMALNGRAIRV 118
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEH------------KLFVGNL 51
+D ++ L+GK F + V + K +E L + E L+V NL
Sbjct: 275 DDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNL 334
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
+VT + L + F +GT+ +V+ D +G SRG GFV +S E A+ +N +
Sbjct: 335 DESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 112 GRAIRVSLAEGK 123
+ + V+LA+ K
Sbjct: 394 TKPLYVALAQRK 405
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++V NLS +++ E L +VF E+G ++ DGE G+S+G+GFV + + A+ +L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 106 NNVELEGRAIRVSLAEGK 123
N + + V A+ K
Sbjct: 285 NGKTFDDKEWFVGKAQKK 302
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 100 TALISLN 106
A+ +N
Sbjct: 62 DAIEEMN 68
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
++ +FVG+L+ VT L++ F+ Y +V GA+V+ D TGR++GYGFV +S SE A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 102 LISLNNVELEGRAIRVSLAEGKR 124
+ +N V R +R+ A K+
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKK 236
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
++ +FVG+L+ VT L++ F+ Y +V GA+V+ D TGR++GYGFV +S SE A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 102 LISLNNVELEGRAIRVSLAEGKR 124
+ +N V R +R+ A K+
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKK 236
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
+FVG L +VT + L VF +YG +V ++ + GFV +S++S E AL L
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI------PAGKRCGFVQFSEKSCAEEALRML 316
Query: 106 NNVELEGRAIRVS 118
N V+L G +R+S
Sbjct: 317 NGVQLGGTTVRLS 329
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 22 RTLRVNLSDKPKPKEPLYPE-TEHKLFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDG 79
+T R+N + ++ E +H +FVG+L+ VT L F+ YG+V GA+V+ D
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 80 ETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 125
TGRS+GYGFV ++ +E A+ +N R +R+ A K +
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNA 236
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
EH +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV ++ SE A
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 102 LISLNNVELEGRAIRVSLAEGKR 124
+ +N R +R A K+
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKK 254
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG LS + E L + F +G +V A V+ D E+G SRG+GFV Y A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 102 LISLNNVELEGRAIRVSLAE 121
+ ++ N EL+GR I V A+
Sbjct: 94 MQAMQNKELDGRIIGVHPAD 113
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
+FVGN+ + T E L ++ E G VV R++ D ETG+ +GYGF Y +A +L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 106 NNVELEGRAIRVSLAEGKR 124
+ E+ GR +RV AE +
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+LS V+ L + F E Y +V A+V+ D TGRS+GYGFV + +E A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N V+ RA+R+ A +++
Sbjct: 259 MNGVKCSSRAMRIGPATPRKT 279
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKE-PLYPETEH------------KLFVGNL 51
ED +E L+GK+F + V + K +E L E L+V NL
Sbjct: 276 EDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNL 335
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
TVT E L ++F E+GT+ +V+ D +G S+G GFV +S SE L +N +
Sbjct: 336 DDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 394
Query: 112 GRAIRVSLAEGK 123
G+ + V+LA+ K
Sbjct: 395 GKPLYVALAQRK 406
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 39/73 (53%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L + VT L F E VV RV D T S GYG+V YS + E A+ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 106 NNVELEGRAIRVS 118
N L G+ IR++
Sbjct: 108 NYSYLNGKMIRIT 120
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEH-KLFVGNLSWTVTSESLIQV 63
+ IE L+GK + + V + + +E + + ++V NLS T + L
Sbjct: 185 DSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTT 244
Query: 64 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
F +YG++ A V+ DG+ G+SR +GFV + + A+ +LN + + + V A+ K
Sbjct: 245 FGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK 303
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K++VG L WT E LI F+ +G ++ V+ D ET RS+GYGFV + K +E T
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF-KDAESATRACK 72
Query: 105 LNNVELEGRAIRVSLA 120
N +EGR LA
Sbjct: 73 DPNPTIEGRITNCKLA 88
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 29 SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 88
S KP Y ET L++G L + + LI +F +G +V A+V+ D TG S+GYG
Sbjct: 467 STPTKPPSKEYDET--NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 89 FVCYSKRSELETALISLNNVELEGRAIRVSLA 120
FV Y+ TA+ ++N EGR + V +A
Sbjct: 525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 29 SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 88
S KP Y ET L++G L + + LI +F +G +V A+V+ D TG S+GYG
Sbjct: 467 STPTKPPSKEYDET--NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 89 FVCYSKRSELETALISLNNVELEGRAIRVSLA 120
FV Y+ TA+ ++N EGR + V +A
Sbjct: 525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 29 SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 88
S KP Y ET L++G L + + LI +F +G +V A+V+ D TG S+GYG
Sbjct: 467 STPTKPPSKEYDET--NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 89 FVCYSKRSELETALISLNNVELEGRAIRVSLA 120
FV Y+ TA+ ++N EGR + V +A
Sbjct: 525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFV LS T +SL Q+F +G + AR++ D ET R +G+GF+ + + AL S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 105 LNNVELEGRAIRVSLAE 121
L+ ++GR I V +A+
Sbjct: 68 LDGKIVDGRLIFVEVAK 84
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 59.3 bits (142), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+L+ V+ L++ F Y +V GA+V+ D TGRS+GYGFV + +E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N R +RV +A KR+
Sbjct: 275 MNGAFCSSRQMRVGIATPKRA 295
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+LS VT L + F + Y +V A+V+ D TGRS+GYGFV + +E AL
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N R +RV +A KR+
Sbjct: 264 MNGAYCSNRQMRVGIATPKRA 284
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG + TVT + L F +YG VV +V+ D ET RSRG+GFV + ++ L
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
N +++ + + AE K+S
Sbjct: 170 GNMIDMADTQVEIKKAEPKKS 190
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVGNL+W T++ L + F+++G VV A V+ + GRS+GYGF+ + AL +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 105 LNNVELEGRAIRVSLA 120
+ ++GR +LA
Sbjct: 73 SKPI-IDGRTTNCNLA 87
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+L+ V+ L + F E Y +V A+V+ D TGRS+GYGFV + +E A+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N V+ RA+R+ A +++
Sbjct: 261 MNGVKCSSRAMRIGPATPRKT 281
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T +LFV LS T+E L F +G +V ARV+ D ++GRS+G+GFV Y+ + E A
Sbjct: 32 TSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
Query: 102 LISLNNVELEGRAIRV 117
+N L+G I V
Sbjct: 92 KAEMNAKFLDGWVIFV 107
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ KL+VGNL + ++ L Q+F+ +G V ++ D ETG+ +G+GF+ + + + A
Sbjct: 263 ADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA 322
Query: 102 LISLN-NVELEGRAIRVS 118
I+LN +E+ GR I+VS
Sbjct: 323 QIALNGKLEIAGRTIKVS 340
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W SE+L + F +YG ++ A V+ D TGRS+GYGFV + A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+ ++GR +LA RS
Sbjct: 85 PTPI-IDGRRANCNLASLGRS 104
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W SE+L + F +YG ++ A V+ D TGRS+GYGFV + A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+ ++GR +LA RS
Sbjct: 85 PTPI-IDGRRANCNLASLGRS 104
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 64
ED + I+ L+ + G+ +RVN + + K + LF+GNL V + L F
Sbjct: 77 EDADYAIKVLNMIKLHGKPIRVNKASQDKKSL----DVGANLFIGNLDPDVDEKLLYDTF 132
Query: 65 QEYGTVV-GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
+G + +++ D +TG SRG+GF+ Y + A+ S+ L R I VS A K
Sbjct: 133 SAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VG L ++ E L ++F + G VV V D T + YGF+ Y + + A+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 106 NNVELEGRAIRVSLA 120
N ++L G+ IRV+ A
Sbjct: 87 NMIKLHGKPIRVNKA 101
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPET------EHKL-------FVGNL 51
ED E ++G +F + L V + K +E L E E K+ +V N+
Sbjct: 252 EDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNV 311
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
+ VT E L + F + GT+ +++ D E G+S+G+GFVC+S E A+ + +
Sbjct: 312 NVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFH 370
Query: 112 GRAIRVSLAEGK 123
G+ + V++A+ K
Sbjct: 371 GKPLYVAIAQKK 382
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L +VT L F E+ ++ R+ D +GRS YG+ + R + A+
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 106 NNVELEGRAIRV 117
NN L G+ IRV
Sbjct: 86 NNSLLNGKMIRV 97
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHK----LFVGNLSWTVTSESL 60
+D N IE + G+ +RV S + P+ +FV NL +VT+ L
Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWSVRA-------PDARRNGVGNVFVKNLPESVTNAVL 128
Query: 61 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 117
+F+++G +V +V E G+SRGYGFV + + A+ +LN+ + + I V
Sbjct: 129 QDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W +++ + F+++G +V A V+ D TGRS+GYGFV + + A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 105 LNNVELEGRAIRVSLA 120
+N V ++GR +LA
Sbjct: 83 MNPV-IDGRRANCNLA 97
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W SE+L Q F++YG ++ A V+ D TGRS+GYGFV + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 105 LNNVELEGRAIRVSLAE 121
+ ++GR +LA
Sbjct: 85 PTPI-IDGRRANCNLAS 100
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
++FVG LS VT L + F +G ++ +++ + +TGRSRG+GF+ ++ R ++ ++
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 105 LNNVELEGRAIRVSLAEGK 123
++ + R I V+ AE K
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+V NLS ++ L ++F YG +V A+V+ E GRS+G+GFVC+S E + A L
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 106 NNVELEGRAIRVSLAEGK 123
N ++G+ I V +AE K
Sbjct: 365 NGFLVDGKPIVVRVAERK 382
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++V NL TVT + L +F +YGTV V+ DG GRSRG+GFV + + A+ SL
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 106 NNVELEGRAIRVSLA 120
++L + + V A
Sbjct: 263 CGLQLGSKKLFVGKA 277
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LFV +S++ T E+L Q F +YG V+ V+ D R +G+ +V +S + E E AL+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 106 NNVELEGRAI 115
N ++GR +
Sbjct: 83 NAQLVDGRVV 92
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KL++G LS SL F + V ARV+ + TGRSRGYGFV + +A+ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 105 LNNVELEGRAIRVSLAE 121
+N EL G I V++A+
Sbjct: 92 MNGQELNGFNISVNVAK 108
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 39 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
+PE +++LF G+L V + L + F + T A+V+ D TG+++GYGFV + ++L
Sbjct: 132 WPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADL 191
Query: 99 ETALISLNNVELEGRAIRV 117
AL +N + R I++
Sbjct: 192 AAALKEMNGKYVGNRPIKL 210
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
+ E K++V L W +E LI F+ +G +V A+V+ DG T RS+G+GFV + E+E+
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF---REVES 62
Query: 101 ALISLNNVE--LEGRAIRVSLA 120
A + N ++GR + LA
Sbjct: 63 ATRACENPNHTIDGRTVNCKLA 84
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 35 KEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSK 94
+ P T K+FVG L+W ++ + + F ++G ++ A ++ D TG+S+GYGFV + +
Sbjct: 8 RSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF-R 66
Query: 95 RSELETALISLNNVELEGRAIRVSLAEGKR 124
S+ T ++ N ++GR ++A R
Sbjct: 67 DSDSATRAVADPNPVIDGRKANCNIASFGR 96
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 55.8 bits (133), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG + +V + + F ++G + +++ D TGRSRG+GFV Y ++ L
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 105 LNNVELEGRAIRVSLAEGKR 124
N +EL G + + AE K+
Sbjct: 191 GNRIELSGTQVEIKKAEPKK 210
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 30 DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGF 89
DK +P ++ K+FVG L+ TS ++ F +YG + + ++ D +TG+ RG+GF
Sbjct: 28 DKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGF 87
Query: 90 VCYSKRSELETAL 102
V Y+ S ++ +
Sbjct: 88 VTYADSSVVDKVI 100
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 55.8 bits (133), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L + VT L F + GTVV RV D T RS GYG+V ++ + A+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 106 NNVELEGRAIRV 117
N + L G+ IRV
Sbjct: 98 NYIPLYGKPIRV 109
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP----LYPET---------EHKLFVGNL 51
+D +E+L+G +F + V + K +E Y + L+V NL
Sbjct: 266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 325
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
+++ E L ++F +GTV ++V+ D G S+G GFV ++ E A+ L+ +E
Sbjct: 326 DPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIE 384
Query: 112 GRAIRVSLAEGK 123
+ + V++A+ K
Sbjct: 385 SKPLYVAIAQRK 396
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 4 VEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQV 63
+E N ++ N D + ++G LR D K ++V NL+ + T + L
Sbjct: 181 IEKLNGMLLN-DKQVYVGPFLRRQERDSTANKTKFT-----NVYVKNLAESTTDDDLKNA 234
Query: 64 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
F EYG + A V+ DGE G+S+G+GFV + + A+ SLN + + + V A+ K
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDK-PKPKEPLYPETEHKLFVGNLSWTVTSESLIQV 63
+D I+ L+ G+ +RV S + P + +F+ NL ++ ++L
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR----SGAGNIFIKNLDESIDHKALHDT 143
Query: 64 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 117
F +G +V +V D +G+S+GYGFV Y+ + A+ LN + L + + V
Sbjct: 144 FSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 64
ED + +E+L+ R +R+ LS++ P L + +F+ NL ++ +++L + F
Sbjct: 110 EDASRAMESLNYAPIRDRPIRIMLSNR-DPSTRL--SGKGNVFIKNLDASIDNKALYETF 166
Query: 65 QEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 117
+GT++ +V D GRS+GYGFV + K + A+ LN + L + + V
Sbjct: 167 SSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L++ NL +V E L ++F EYG V +V+ + + G SRG+GFV YS E A+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 106 NNVELEGRAIRVSLAEGK 123
N + + + V+LA+ K
Sbjct: 403 NGKMIGRKPLYVALAQRK 420
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 64
ED + +E+L+ R +R+ LS++ P L + +F+ NL ++ +++L + F
Sbjct: 110 EDASRAMESLNYAPIRDRPIRIMLSNR-DPSTRL--SGKGNVFIKNLDASIDNKALYETF 166
Query: 65 QEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 117
+GT++ +V D GRS+GYGFV + K + A+ LN + L + + V
Sbjct: 167 SSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L++ NL +V E L ++F EYG V +V+ + + G SRG+GFV YS E A+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 106 NNVELEGRAIRVSLAEGK 123
N + + + V+LA+ K
Sbjct: 403 NGKMIGRKPLYVALAQRK 420
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W ++ + + F+++G ++ A ++ D TG+S+GYGFV + + S+ T ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF-RESDSATRAVA 76
Query: 105 LNNVELEGRAIRVSLA 120
N ++GR ++A
Sbjct: 77 DPNPVIDGRKANCNIA 92
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 30 DKPKPKEPLYPETEHK-------------LFVGNLSWTVTSESLIQVFQEYGTVVGARVL 76
D KP P+ E K +F+G L V E L + +E G + R++
Sbjct: 69 DDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLM 128
Query: 77 YDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
D ++G S+GY FV + + + A+ L++ E +G+ IR SL+E K
Sbjct: 129 KDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 175
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 19/117 (16%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
IE L KEF G+T+R +LS ET+++LF+GN+ T + +V ++ G
Sbjct: 154 IEELHSKEFKGKTIRCSLS-----------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPG 202
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 125
T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 203 DPT------NTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 253
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 30 DKPKPKEPLYPETEHK-------------LFVGNLSWTVTSESLIQVFQEYGTVVGARVL 76
D KP P+ E K +F+G L V E L + +E G + R++
Sbjct: 89 DDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLM 148
Query: 77 YDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
D ++G S+GY FV + + + A+ L++ E +G+ IR SL+E K
Sbjct: 149 KDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT- 69
IE L KEF G+T+R +LS ET+++LF+GN+ T + +V ++ G
Sbjct: 174 IEELHSKEFKGKTIRCSLS-----------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 70 VVGARVLYD-GETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 125
V ++ D T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 281
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 30 DKPKPKEPLYPETEHK-------------LFVGNLSWTVTSESLIQVFQEYGTVVGARVL 76
D KP P+ E K +F+G L V E L + +E G + R++
Sbjct: 89 DDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLM 148
Query: 77 YDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
D ++G S+GY FV + + + A+ L++ E +G+ IR SL+E K
Sbjct: 149 KDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT- 69
IE L KEF G+T+R +LS ET+++LF+GN+ T + +V ++ G
Sbjct: 174 IEELHSKEFKGKTIRCSLS-----------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 70 VVGARVLYD-GETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 125
V ++ D T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 281
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 6 DCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ 65
D +E L+ R +R+ LS++ P L + +F+ NL ++ +++L + F
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNR-DPSTRL--SGKGNIFIKNLDASIDNKALFETFS 157
Query: 66 EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 117
+GT++ +V D TGRS+GYGFV + K + A+ LN + + + + V
Sbjct: 158 SFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 3 CVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHK------------LFVG 49
C E + +E ++G L V + K +E L + E + L++
Sbjct: 278 CTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLK 337
Query: 50 NLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVE 109
NL +V E L ++F EYG V ++V+ + + G SRG+GFV YS E AL +N
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 110 LEGRAIRVSLAEGK 123
+ + + ++LA+ K
Sbjct: 397 IGRKPLYIALAQRK 410
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFV-----CYSKRSELE 99
KLF+G +SW E L F YG VV A ++ D TGR+RG+GF+ C S+R ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 100 TALISLNNVE 109
+I VE
Sbjct: 67 KHIIDGRTVE 76
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L ++T E F ++GT+ V+YD T R RG+GF+ + ++ L
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 105 LNNVELEGRAIRVSLA 120
+ EL G+ + V A
Sbjct: 171 TFH-ELNGKLVEVKRA 185
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFV-----CYSKRSELE 99
KLF+G +SW E L F YG VV A ++ D TGR+RG+GF+ C S+R ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 100 TALISLNNVE 109
+I VE
Sbjct: 67 KHIIDGRTVE 76
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L ++T E F ++GT+ V+YD T R RG+GF+ + ++ L
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 105 LNNVELEGRAIRVSLA 120
+ EL G+ + V A
Sbjct: 171 TFH-ELNGKLVEVKRA 185
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFV-----CYSKRSELE 99
KLF+G +SW E L F YG VV A ++ D TGR+RG+GF+ C S+R ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 100 TALISLNNVE 109
+I VE
Sbjct: 67 KHIIDGRTVE 76
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L ++T E F ++GT+ V+YD T R RG+GF+ + ++ L
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 105 LNNVELEGRAIRVSLA 120
+ EL G+ + V A
Sbjct: 171 TFH-ELNGKLVEVKRA 185
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFV-----CYSKRSELE 99
KLF+G +SW E L F YG VV A ++ D TGR+RG+GF+ C S+R ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 100 TALISLNNVE 109
+I VE
Sbjct: 67 KHIIDGRTVE 76
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L ++T E F ++GT+ V+YD T R RG+GF+ + ++ L
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 105 LNNVELEGRAIRVSLA 120
+ EL G+ + V A
Sbjct: 171 TFH-ELNGKLVEVKRA 185
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W E++ + F+++G ++ A V+ D +GRS+GYGFV + + +A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 105 LNNVELEGRAIRVSLAE 121
V ++GR +LA
Sbjct: 74 ATPV-IDGRRANCNLAS 89
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ +VT + F ++G + V+YD T R RG+GF+ Y ++
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V LA
Sbjct: 162 KVLQKTFH-ELNGKMVEVKLA 181
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
KLF+G +SW + + L F +G V+ A ++ D TGR+RG+GFV ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA 55
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ +VT + F ++G + V+YD T R RG+GF+ Y ++
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V LA
Sbjct: 162 KVLQKTFH-ELNGKMVEVKLA 181
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
KLF+G +SW + + L F +G V+ A ++ D TGR+RG+GFV ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA 55
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W E++ + F+++G ++ A V+ D +GRS+GYGFV + + +A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 105 LNNVELEGRAIRVSLAE 121
V ++GR +LA
Sbjct: 74 ATPV-IDGRRANCNLAS 89
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ +VT + F ++G + V+YD T R RG+GF+ Y ++
Sbjct: 124 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 183
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V LA
Sbjct: 184 KVLQKTFH-ELNGKMVEVKLA 203
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
KLF+G +SW + + L F +G V+ A ++ D TGR+RG+GFV ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA 55
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W SL F+++G +V A V+ D +GRS+GYGFV + + A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 105 LNNVELEGRAIRVSLA 120
V ++GR +LA
Sbjct: 68 PAPV-IDGRRANCNLA 82
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F +G V+ A +L D TGR+RG+GFV ++ + E +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 105 LNNVELEGRAIRVSLA 120
+N+ +GR + A
Sbjct: 67 KHNI--DGRLVEAKKA 80
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 37 PLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRS 96
P P K+FVG L +VT F+++GT V+YD T R RG+GF+ Y
Sbjct: 101 PGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Query: 97 ELETALISLNNVELEGRAIRVSLA 120
+E L+ + EL G+ + V A
Sbjct: 161 AVEKVLLKTFH-ELNGKMVEVKRA 183
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 35 KEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSK 94
+ P T K+FVG L+W ++ + + F+++G ++ A ++ D TG+S+GYGFV + +
Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF-R 66
Query: 95 RSELETALISLNNVELEGRAIRVSLAE 121
S+ T ++ N ++GR ++A
Sbjct: 67 ESDSATRAVADPNPVIDGRKANCNIAS 93
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W SL F+++G +V A V+ D +GRS+GYGFV + + A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 105 LNNVELEGRAIRVSLA 120
V ++GR +LA
Sbjct: 68 PAPV-IDGRRANCNLA 82
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F +G V+ A +L D TGR+RG+GFV ++ + E +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 105 LNNVE 109
+N++
Sbjct: 67 KHNID 71
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 37 PLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRS 96
P P K+FVG L +VT F+++GT V+YD T R RG+GF+ Y
Sbjct: 101 PGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Query: 97 ELETALISLNNVELEGRAIRVSLA 120
+E L+ + EL G+ + V A
Sbjct: 161 AVEKVLLKTFH-ELNGKMVEVKRA 183
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ +VT + F ++G + V+YD T R RG+GF+ Y ++
Sbjct: 42 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 101
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V LA
Sbjct: 102 KVLQKTFH-ELNGKMVEVKLA 121
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W E++ + F+++G ++ A V+ D +GRS+GYGFV + + +A
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
Query: 102 LISLNNVELEGRAIRVSLAE 121
+ V ++GR +LA
Sbjct: 71 CVDATPV-IDGRRANCNLAS 89
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+L+VGNL ++ + L +VF+ +G+V +V D ETG +G+GFV +++ + AL
Sbjct: 324 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNL 382
Query: 105 LNNVELEGRAIRVS 118
+E+ GRAI+VS
Sbjct: 383 NGQLEIAGRAIKVS 396
>AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=292
Length = 292
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V++E + ++F E G + + YD +GRS+G V +S+R +
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSRRGDALA 163
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ NNV+L+G+ +++ +
Sbjct: 164 AVKRYNNVQLDGKLMKIEI 182
>AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=290
Length = 290
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V++E + ++F E G + + YD +GRS+G V +S+R +
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSRRGDALA 163
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ NNV+L+G+ +++ +
Sbjct: 164 AVKRYNNVQLDGKLMKIEI 182
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F +YG +V A ++ D TGR+RG+GF+ ++ S E ++
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 105 LNNVELEGRAIRVSLA 120
+ + +GR + A
Sbjct: 73 KHII--DGRTVEAKKA 86
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L ++T F ++GT+ V+YD T R RG+GF+ + ++ L
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 179
Query: 105 LNNVELEGRAIRVSLA 120
+ EL G+ + V A
Sbjct: 180 TFH-ELNGKMVEVKRA 194
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 53.1 bits (126), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F +YG +V A ++ D TGR+RG+GF+ ++ S E ++
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 105 LNNVELEGRAIRVSLA 120
+ + +GR + A
Sbjct: 76 KHII--DGRTVEAKKA 89
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L ++T F ++GT+ V+YD T R RG+GF+ + ++ L
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 105 LNNVELEGRAIRVSLA 120
+ EL G+ + V A
Sbjct: 183 TFH-ELNGKMVEVKRA 197
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+L+VGNL ++ + L +VF+ +G+V +V D ETG +G+GFV +++ + AL
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNL 344
Query: 105 LNNVELEGRAIRVS 118
+E+ GRAI+VS
Sbjct: 345 NGQLEIAGRAIKVS 358
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y + E A+
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRVVDGREITVQFAK 93
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y + E A+
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRVVDGREITVQFAK 93
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LF+ N+ + L FQ +G V+ A+V D TG S+ +GF+ Y ++ + A+ ++
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 106 NNVELEGRAIRVSL 119
N +L G+ ++V L
Sbjct: 401 NGCQLSGKKLKVQL 414
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L + + L F YG ++ +++YD TGRSRG+GFV + ++
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
EL + + + AE KR+
Sbjct: 218 GKVHELGDKQVEIKRAEPKRT 238
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
KLFVG +SW T+E+ F ++G VV + ++ D TG RG+GFV ++ + E L
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL 124
>AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=244
Length = 244
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 143
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ N+V+L+G+ +++ +
Sbjct: 144 AVKKYNDVQLDGKPMKIEI 162
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG + TVT + L F +YG VV +V+ D ET RSRG+GFV + ++ L
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 105 LNNVEL 110
N +++
Sbjct: 170 GNMIDM 175
>AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=245
Length = 245
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 143
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ N+V+L+G+ +++ +
Sbjct: 144 AVKKYNDVQLDGKPMKIEI 162
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LF+ N+ + L FQ +G V+ A+V D TG S+ +GF+ Y ++ + A+ ++
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 106 NNVELEGRAIRVSL 119
N +L G+ ++V L
Sbjct: 392 NGCQLSGKKLKVQL 405
>AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=242
Length = 242
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 83 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 141
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ N+V+L+G+ +++ +
Sbjct: 142 AVKKYNDVQLDGKPMKIEI 160
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+L+VGNL ++ + L +VF+ +G+V +V D ETG +G+GFV +++ + AL
Sbjct: 335 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNL 393
Query: 105 LNNVELEGRAIRVS 118
+E+ GRAI+VS
Sbjct: 394 NGQLEIAGRAIKVS 407
>AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140629-24141504 FORWARD LENGTH=178
Length = 178
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 19 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 77
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ N+V+L+G+ +++ +
Sbjct: 78 AVKKYNDVQLDGKPMKIEI 96
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 52.4 bits (124), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
KLFVG +SW + L + F YG V A V+ D TGR RG+GFV +S S L+ L
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L T+T E Q F+ YG V ++YD T R RG+GFV + +++ L
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 105 LNNVELEGRAIRVSLA 120
+ +L G+ + V A
Sbjct: 171 TFH-DLSGKQVEVKRA 185
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W ++SLI F++YG + + + D +G+S+GYGF+ + RS AL
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W ++SLI F++YG + + + D +G+S+GYGF+ + RS AL
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141410 FORWARD LENGTH=211
Length = 211
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 143
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ N+V+L+G+ +++ +
Sbjct: 144 AVKKYNDVQLDGKPMKIEI 162
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FV L W T E+L+ VF+ YG + V+ D TG+++G+GFV + R + A
Sbjct: 102 THRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
Query: 102 L 102
L
Sbjct: 162 L 162
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 27/140 (19%)
Query: 12 ENLDGKEFLGRTLRVNLSDKPKP---KEPL------YPETEH---------------KLF 47
E+ D + F+G+ + + S +P ++PL YP ++H KLF
Sbjct: 64 ESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLF 123
Query: 48 VGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNN 107
VG++ T T E + F+++G V+ ++ D TG+ +G FV Y+ + + A+ +L+N
Sbjct: 124 VGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHN 183
Query: 108 -VELEGRA--IRVSLAEGKR 124
+ L G ++V A+G+R
Sbjct: 184 QITLPGGTGPVQVRYADGER 203
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 27/140 (19%)
Query: 12 ENLDGKEFLGRTLRVNLSDKPKP---KEPL------YPETEH---------------KLF 47
E+ D + F+G+ + + S +P ++PL YP ++H KLF
Sbjct: 64 ESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLF 123
Query: 48 VGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNN 107
VG++ T T E + F+++G V+ ++ D TG+ +G FV Y+ + + A+ +L+N
Sbjct: 124 VGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHN 183
Query: 108 -VELEGRA--IRVSLAEGKR 124
+ L G ++V A+G+R
Sbjct: 184 QITLPGGTGPVQVRYADGER 203
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FV L W T E+L+ VF+ YG + V+ D TG+++G+GFV + R + A
Sbjct: 102 THRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
Query: 102 L 102
L
Sbjct: 162 L 162
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+V NL +++T+ + +F +G V VL D T +SRG FV Y R + A S+
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 106 NNVELEGRAIRVSLA 120
+ L GR + VS+A
Sbjct: 119 DAKILNGRKLTVSIA 133
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VG L + +T E++ +VF YG+V+ +++ D + R + YGFV +S R + A+ +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 106 NNVELEGRAIRVS 118
+ + GRA+RV+
Sbjct: 68 DGKSIGGRAVRVN 80
>AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 |
chr5:14981805-14983978 REVERSE LENGTH=280
Length = 280
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+L V NL VT+E + ++F E G V + YD + GR G V Y +RS+ AL
Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYD-KNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
NNV L+GR +R+ + G S
Sbjct: 153 YNNVLLDGRPMRLEILGGNNS 173
>AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 |
chr5:14981805-14983978 REVERSE LENGTH=288
Length = 288
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+L V NL VT+E + ++F E G V + YD + GR G V Y +RS+ AL
Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYD-KNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
NNV L+GR +R+ + G S
Sbjct: 153 YNNVLLDGRPMRLEILGGNNS 173
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
++ +FV L W T E+L F+ YG + V+ D +TGR++G+GFV + R A
Sbjct: 161 SQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
Query: 102 L 102
L
Sbjct: 221 L 221
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG LS T E F+ +G V++DG T R RG+GFV Y +E + S
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 105 LNNVELEGRAIRVSLA 120
N EL + + V A
Sbjct: 181 -NFHELSDKRVEVKRA 195
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
+KLFVG ++ + E+L Q F YG V+ A V + TG+ RG+GFV ++ ++ AL
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL 64
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K++VG L W +E L F+++G ++ ++ D ETGRS GYGFV + + E+A +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTF---RDAESATRA 109
Query: 105 LNNVE--LEGRAIRVSLA 120
N + ++GR + +LA
Sbjct: 110 CQNPKPVIDGREAKCNLA 127
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LF+ N+ + L FQ +G V+ A+V D TG S+ +GFV Y ++ + A+ +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 106 NNVELEGRAIRVSL 119
N L G+ ++V L
Sbjct: 411 NGRHLGGKKLKVQL 424
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 38 LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSE 97
+ E+ FV L + L +F ++G V+ ++++YD +TG+SR +GFV + +
Sbjct: 1 MATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKS 60
Query: 98 LETALISLNNVELEGRAIRV 117
+ A++ ++ E + + V
Sbjct: 61 MTDAIMIMDVEESRSKCVNV 80
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 28 LSDKPKPKEPLYPETEHK--LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSR 85
LS + + + P P+ E LFV LS TSE L F ++G V A+V+ D +G S+
Sbjct: 38 LSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSK 97
Query: 86 GYGFVCYSKRSELETALISLNNVELEGRAI 115
G+GFV Y+ + + ++ L+G I
Sbjct: 98 GFGFVRYATLEDSAKGIAGMDGKFLDGWVI 127
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LFVG LS T ++L +V +YG + R++ TG SRGYGFV Y E+ A
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 106 NNVELEGRAI 115
++ ++GR I
Sbjct: 126 HHSLIDGREI 135
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++V NL T T L ++F E+G + A V+ DGE G+SR +GFV + K TA+ +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 106 NNVELEGRAIRVSLAEGK 123
N V ++ + + V A+ K
Sbjct: 180 NGVVVDEKELHVGRAQRK 197
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 1 MSCVEDCNTVIENLDGKEF-LGRTLR-VNLSDKPKPK---EPLYPETEHK----LFVGNL 51
++ +E N V+ +D KE +GR R N ++ K K E + + + + L+V NL
Sbjct: 173 VTAIEKMNGVV--VDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNL 230
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
+V + L ++F E+GT+ +V+ G S+G GFV +S E A++ +N +
Sbjct: 231 DDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAMLKMNGKMVG 289
Query: 112 GRAIRVSLAEGK 123
+ I VSLA+ K
Sbjct: 290 NKPIYVSLAQCK 301
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
+ +FV W T E+L F+ YG + V+ D +TGR +GYGFV + R AL
Sbjct: 407 QRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 40 PETEHK-----LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSK 94
PE E K LFV L+ E L +F +GTVV A V+ D +TG S Y F+ +
Sbjct: 234 PEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFEN 293
Query: 95 RSELETALISLNNVELEGRAIRVSLAE 121
+ E A ++N ++ R I V ++
Sbjct: 294 KESCEQAYFKMDNALIDDRRIHVDFSQ 320
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P KLF+ LS+ + ++L F+ +G +V +++ D + RS+GY F+ Y+
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 100 TALISLNNVELEGRAIRVSLAEGK 123
TAL +N + G I V +A+ K
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTK 361
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
++ KLF+ L+ T+E L +F YG + A V+ D TG+S+GYGFV + ++ A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF---MHVDGA 129
Query: 102 LISLN--NVELEGRAIRVSLA 120
L++L + +++GR LA
Sbjct: 130 LLALKEPSKKIDGRVTVTQLA 150
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
++ KLF+ L+ T+E L +F YG + A V+ D TG+S+GYGFV + ++ A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF---MHVDGA 129
Query: 102 LISLN--NVELEGRAIRVSLA 120
L++L + +++GR LA
Sbjct: 130 LLALKEPSKKIDGRVTVTQLA 150
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFV NL +T T E L++ F +G + ++ D ET RSRG ++ Y A+
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
L+N +GR + + A+ + +
Sbjct: 355 LDNSSFQGRLLHILPAKHRET 375
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VG + + +T L+ VF +YG +V ++ D TG+S+G+ F+ Y + A+ +L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 106 NNVELEGRAIRVS 118
N + GR I+V
Sbjct: 98 NGALVLGRTIKVD 110
>AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding
protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227
Length = 227
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VGN+ + T E + Q FQ GTV +L D + G+ +G+ +V + + ++ +LI L
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLI-L 162
Query: 106 NNVELEGRAIRVS 118
N EL GR I+VS
Sbjct: 163 NESELHGRQIKVS 175
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW L + F +G V+ V+ + TGR RG+GFV +S + ++ L
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
++++ ++ +++ ++S
Sbjct: 67 KHHIDNRDVDVKRAMSREEQS 87
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E+ + V NLS L+++F +G V V D +TG SRG+GFV + R + + A+
Sbjct: 239 ENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 298
Query: 103 ISLNNVELEGRAIRVSLA 120
LN + +RV A
Sbjct: 299 NKLNGYGYDNLILRVEWA 316
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E+ + V NLS L+++F +G V V D +TG SRG+GFV + R + + A+
Sbjct: 212 ENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
Query: 103 ISLNNVELEGRAIRVSLA 120
LN + +RV A
Sbjct: 272 NKLNGYGYDNLILRVEWA 289
>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779760-20781241 FORWARD LENGTH=265
Length = 265
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VGN+ + T E + Q FQ GTV +L D + G+ +G+ +V + + ++ +LI L
Sbjct: 143 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLI-L 200
Query: 106 NNVELEGRAIRVS 118
N EL GR I+VS
Sbjct: 201 NESELHGRQIKVS 213
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W E++ F +YG ++ A ++ D T RS+GYGFV + K ++ T
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF-KDAKAATRACE 76
Query: 105 LNNVELEGRAIRVSLAE 121
+ + GR +LA
Sbjct: 77 DSTPIINGRRANCNLAS 93
>AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779346-20781241 FORWARD LENGTH=142
Length = 142
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VGN+ + T E + Q FQ GTV +L D + G+ +G+ +V + + ++ +LI L
Sbjct: 20 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLI-L 77
Query: 106 NNVELEGRAIRVS 118
N EL GR I+VS
Sbjct: 78 NESELHGRQIKVS 90
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E+ + V NLS L+++F+ +G V V D +T SRG+GFV + R + + A+
Sbjct: 205 ENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 264
Query: 103 ISLNNVELEGRAIRVSLAEGK 123
LN + +RV + K
Sbjct: 265 NKLNGYGYDNLILRVEWSTPK 285
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 47 FVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 106
FV S +V+ L +VF E+G V +++ + T +S GYG+V ++ + + ++A+ ++N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 107 NVELEGRAIRVSLAE 121
+GR I V +
Sbjct: 140 GKFFDGRFILVKFGQ 154
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y S +
Sbjct: 372 EGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDI 431
Query: 101 ALISLNNVELEGRAIRVSLA 120
A +LN +++ + + V A
Sbjct: 432 ACAALNGIKMGDKTLTVRRA 451
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y S +
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 101 ALISLNNVELEGRAIRVSLA 120
A +LN +++ + + V A
Sbjct: 416 ACAALNGIKMGDKTLTVRRA 435
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y S +
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 101 ALISLNNVELEGRAIRVSLA 120
A +LN +++ + + V A
Sbjct: 416 ACAALNGIKMGDKTLTVRRA 435
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y S +
Sbjct: 334 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 393
Query: 101 ALISLNNVELEGRAIRVSLA 120
A +LN +++ + + V A
Sbjct: 394 ACAALNGIKMGDKTLTVRRA 413
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y S +
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 101 ALISLNNVELEGRAIRVSLA 120
A +LN +++ + + V A
Sbjct: 416 ACAALNGIKMGDKTLTVRRA 435
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG++ T T E + F+++G V+ ++ D TG+ +G FV Y+ + + A+ +
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 105 LNN-VELEGRA--IRVSLAEGKR 124
L+N + L G ++V A+G+R
Sbjct: 106 LHNQITLPGGTGPVQVRYADGER 128
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 31 KPKPKEPLYPETEH----KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDG--ETGRS 84
KP +E P+ E K+FVGNL + + F+++G + +L G E ++
Sbjct: 148 KPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENV-ILIKGHHEVEKN 206
Query: 85 RGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 124
G+GF+ Y+ A + + VE GR + V L +GKR
Sbjct: 207 AGFGFIIYAAEKSAMKA-VEFDGVEFHGRILTVKLDDGKR 245