Miyakogusa Predicted Gene
- Lj6g3v0084360.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0084360.1 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147462,50,5e-16,RRM_1,RNA recognition motif domain; RNA
recognition motif,RNA recognition motif domain; no
descripti,CUFF.57495.1
(273 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 275 3e-74
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 158 3e-39
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 157 7e-39
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 153 1e-37
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 142 2e-34
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 114 9e-26
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 112 3e-25
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 110 8e-25
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 87 1e-17
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 87 1e-17
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 1e-17
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 1e-17
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 1e-17
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 87 1e-17
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 4e-17
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 4e-17
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 1e-16
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 7e-16
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 81 7e-16
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 7e-16
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 80 2e-15
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 9e-15
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 76 2e-14
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 76 2e-14
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 76 3e-14
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 75 4e-14
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 4e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 75 4e-14
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 75 4e-14
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 75 5e-14
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 6e-14
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 7e-14
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 8e-14
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 8e-14
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 9e-14
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 9e-14
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 74 9e-14
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 74 9e-14
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 1e-13
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 74 1e-13
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 74 1e-13
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 74 1e-13
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 74 2e-13
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 73 2e-13
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 73 2e-13
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 3e-13
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 3e-13
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 72 5e-13
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 72 5e-13
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 72 6e-13
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 71 6e-13
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 71 9e-13
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 70 1e-12
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 70 1e-12
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 1e-12
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 70 2e-12
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 70 2e-12
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 70 2e-12
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 6e-12
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 68 6e-12
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 67 1e-11
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 2e-11
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 66 2e-11
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 66 3e-11
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 3e-11
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 64 8e-11
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 63 2e-10
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 63 2e-10
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 63 2e-10
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 63 2e-10
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 63 2e-10
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 62 4e-10
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 62 4e-10
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 62 5e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 61 6e-10
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 61 8e-10
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 59 3e-09
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 59 3e-09
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 59 3e-09
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 59 5e-09
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 58 5e-09
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 58 5e-09
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 58 5e-09
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 58 5e-09
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 58 5e-09
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 58 6e-09
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 58 7e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 8e-09
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 1e-08
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 1e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 1e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 56 2e-08
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 55 6e-08
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 9e-08
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 54 1e-07
AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 54 1e-07
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 54 1e-07
AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 54 2e-07
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 53 2e-07
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 2e-07
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 2e-07
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 53 3e-07
AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 52 3e-07
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149... 52 6e-07
AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149... 52 6e-07
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 51 8e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 51 8e-07
AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-ri... 50 1e-06
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 50 1e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 50 2e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 49 4e-06
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 49 4e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 6e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 48 7e-06
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/173 (73%), Positives = 154/173 (89%), Gaps = 1/173 (0%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKLYFGNLPY+VDSA LA +I+++ + EL+EVLY+RD+G+SRGFAFVTMS VEDCN +I+
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 161 NLDGKEFLGRTLRVNLSDKPKP-KEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
NLDG E+LGR L+VN +DKPKP KEPLYPETEHKLFVGNLSWTVTSESL F+E G VV
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
GARV++DG+TGRSRGYGFVCYS ++E+ETAL SL+ ELEGRAIRV+LA+GK+
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 22/192 (11%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GNLP++VDSAQLA L E G+ E++EV+YD+ +G+SRGF FVTMS V + +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPE----------------------TEHKLFVGNL 199
+G E GR LRVN P +E + + ++++VGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 200 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 259
SW V +L +F E G VV ARV+YD ++GRS+G+GFV Y E++ A+ SL+ +L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 260 GRAIRVSLAEGK 271
GR IRVS AE +
Sbjct: 272 GRQIRVSEAEAR 283
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++Y GNL + VD L L E G V+YDRDSG+S+GF FVT ++ I+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
+LDG + GR +RV+ ++ P+
Sbjct: 264 SLDGADLDGRQIRVSEAEARPPR 286
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 115/174 (66%), Gaps = 5/174 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GNLPY VDS LA L E+ G+ E+ EV+Y+RD+ +SRGF FVTMS VE+ +E
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 162 LDGKEFLGRTLRVNLS----DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT 217
+ E GR L VN + +P+ ++P + +++VGNL W V S L ++F E+G
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPE-RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGK 232
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
VV ARV+ D ETGRSRG+GFV S +E+ A+ +L+ LEGRAI+V++AE +
Sbjct: 233 VVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P E KLFVGNL + V S++L +F++ GTV + V+Y+ +T +SRG+GFV S E E
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 248 TALISLNNVELEGRAIRVSLA 268
A+ N+ E+ GR + V+ A
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRA 189
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 113/173 (65%), Gaps = 5/173 (2%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
KL+ GNL Y V+S LA L E+ G+ E+ EV+Y+R++ +SRGF FVTMS V++ T +E
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 161 NLDGKEFLGRTLRVNLS----DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYG 216
+ + GR L VN + +P+ + P E +++VGNL W V + L Q+F E+G
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268
Query: 217 TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
VV ARV+YD ETGRSRG+GFV S EL A+ +L+ LEGRAIRV++AE
Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++Y GNLP+ VD+ +L L E+G V+YDR++G+SRGF FVTMS V++ N I
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 162 LDGKEFLGRTLRVNLSDKPKPK 183
LDG+ GR +RVN++++ P+
Sbjct: 305 LDGQNLEGRAIRVNVAEERPPR 326
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P E KLFVGNL++ V S++L +F++ GTV A V+Y+ ET +SRG+GFV S E E
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 248 TALISLNNVELEGRAIRVSLA 268
TA+ N +L GR + V+ A
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKA 226
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 10/177 (5%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++Y GN+P +V + QL L+EE+G+ E ++V+YD+ SG+SR F F TM VED N V+E
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEP----------LYPETEHKLFVGNLSWTVTSESLIQV 211
L+G GR ++VN+++KP P + ++ +K++VGNL+ TVT E L +
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F E G VV A+V T +S G+GFV +S ++E A+++LNN LEG+ IRV+ A
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 178 DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGF 237
+KP +P E ++++GN+ TVT+E L ++ +E+G V +V+YD +GRSR +GF
Sbjct: 63 EKPAALDP-SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 238 VCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ + LN +EGR I+V++ E
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 10/177 (5%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++Y GN+P +V + QL L+EE+G+ E ++V+YD+ SG+SR F F TM VED N V+E
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEP----------LYPETEHKLFVGNLSWTVTSESLIQV 211
L+G GR ++VN+++KP P + ++ +K++VGNL+ TVT E L +
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F E G VV A+V T +S G+GFV +S ++E A+++LNN LEG+ IRV+ A
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 178 DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGF 237
+KP +P E ++++GN+ TVT+E L ++ +E+G V +V+YD +GRSR +GF
Sbjct: 63 EKPAALDP-SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 238 VCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ + LN +EGR I+V++ E
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 113/179 (63%), Gaps = 12/179 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+LY GNLPY++ S++L+ + E G+ ++++YD+ + +SRGF FVTM +E+ ++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEP------------LYPETEHKLFVGNLSWTVTSESLI 209
+ + GRT++VN + P+ E Y ++ HK++ GNL W +TS+ L
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F + V+GA+V+Y+ TGRSRG+GF+ + +++AL ++N VE+EGRA+R++LA
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
E +L+VGNL +T+TS L Q+F E GTVV +++YD T RSRG+GFV E + A+
Sbjct: 115 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 174
Query: 251 ISLNNVELEGRAIRVSLAEGKR 272
N+ ++ GR ++V+ E R
Sbjct: 175 QMFNSSQIGGRTVKVNFPEVPR 196
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 7/85 (8%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELI---EVLYDRDSGKSRGFAFVTMSCVEDCNTV 158
K+Y GNL +++ S GL + +G + +V+Y+R++G+SRGF F++ E+ +
Sbjct: 220 KVYAGNLGWNLTSQ---GLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSA 276
Query: 159 IENLDGKEFLGRTLRVNL-SDKPKP 182
+ ++G E GR LR+NL S++ KP
Sbjct: 277 LATMNGVEVEGRALRLNLASEREKP 301
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+LY N+P S D AQL + + +G+ +EV + +G+SRG +VTM + I +
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 162 LDGKEFLGRTLRVNLS--------DKPK-----PKEPLYPETEHKLFVGNLSWTVTSESL 208
LDG E GR +RV S P+ PK+ L E++HK++VGNL W + L
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
F ++GT+V RVL+D +TGR+R + F+ ++ E + AL S N + EGR I V
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIV 284
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 184 EPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKR 243
EP+ +L+V N+ + L+ +FQ +GTV+ V + +TG SRG G+V
Sbjct: 100 EPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSI 159
Query: 244 SELETALISLNNVELEGRAIRV 265
+ + A+ SL+ E+ GR +RV
Sbjct: 160 NSAKIAIASLDGTEVGGREMRV 181
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ NLP+S+ ++ L + G+ +E++ +D GK+RGFAFVTM+ E+ I+
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 162 LDGKEFLGRTLRVNLS---DKPKPKEP-----LYP-ETEHKLFVGNLSWTVTSESLIQVF 212
D + GR + V+ + KP PK P P +T HKL+V NL+W S L ++F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 213 QEYG-TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V ARV++ GRS GYGFV ++ R E E A+ LN E+ GR I + +
Sbjct: 215 TAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 177 SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
S + K +E + KLFV NL W+++ + ++F + GTV ++ + G++RG+
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 237 FVCYSKRSELETALISLNNVELEGRAIRVSLA 268
FV + E + A+ + ++ GR I VS A
Sbjct: 139 FVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 15/178 (8%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVL-YDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+LY N+P S D AQL + + +G+ +EV+ + +G+SRG +VTM + I
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 161 NLDGKEFLGRTLRVNLS--------DKPK-----PKEPLYPETEHKLFVGNLSWTVTSES 207
+LDG E GR +RV S P+ PK+ L E++HK++VGNL W +
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
L F ++GT+V RVL+D +TGR+R + F+ ++ E + AL S N + EGR I V
Sbjct: 229 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIV 285
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 184 EPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVL-YDGETGRSRGYGFVCYSK 242
EP+ +L+V N+ + L+ +FQ +GTV+ V+ + +TG SRG G+V
Sbjct: 100 EPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGS 159
Query: 243 RSELETALISLNNVELEGRAIRV 265
+ + A+ SL+ E+ GR +RV
Sbjct: 160 INSAKIAIASLDGTEVGGREMRV 182
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T+L N+P++ + L E+YGS IE+ + ++RG F+ M+ E+ T ++
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALK 152
Query: 161 NLDGKEFLGRTLRVNLSDKPK-----PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-E 214
+L+ E+ GR L+V+ + K P+E P LFV NL++ ++ L + F +
Sbjct: 153 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDAD 212
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
G VV V++ RS GYGFV + + + E ALI + GR IR++
Sbjct: 213 TGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 264
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T+L N+P++ + L E+YGS IE+ + ++RG F+ M+ E+ T ++
Sbjct: 34 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALK 92
Query: 161 NLDGKEFLGRTLRVNLSDKPK-----PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-E 214
+L+ E+ GR L+V+ + K P+E P LFV NL++ ++ L + F +
Sbjct: 93 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDAD 152
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
G VV V++ RS GYGFV + + + E ALI + GR IR++
Sbjct: 153 TGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 204
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 192 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 251
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 252 SLNNVELEGRAIRVSLAEGK 271
SLN +L+GR IRVS AE +
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GNL ++VDSAQLA L E G+ E++EV+YD+ +G+SRGF FVTMS + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 162 LDGKEFLGRTLRVNLSDKPKPKE 184
+G EF GR LRVN P +E
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKRE 182
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+LY GNL + VD L L E G V+YDRDSG+S+GF FVT+S ++ I
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
+L+G + GR +RV+ ++ P+
Sbjct: 317 SLNGADLDGRQIRVSEAEARPPR 339
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 253 LNNVELEGRAIRVS 266
N E EGR +RV+
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 192 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 251
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 252 SLNNVELEGRAIRVSLAEGK 271
SLN +L+GR IRVS AE +
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GNL ++VDSAQLA L E G+ E++EV+YD+ +G+SRGF FVTMS + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 162 LDGKEFLGRTLRVNLSDKPKPKE 184
+G EF GR LRVN P +E
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKRE 182
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+LY GNL + VD L L E G V+YDRDSG+S+GF FVT+S ++ I
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
+L+G + GR +RV+ ++ P+
Sbjct: 317 SLNGADLDGRQIRVSEAEARPPR 339
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 253 LNNVELEGRAIRVS 266
N E EGR +RV+
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 192 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 251
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 252 SLNNVELEGRAIRVSLAEGK 271
SLN +L+GR IRVS AE +
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GNL ++VDSAQLA L E G+ E++EV+YD+ +G+SRGF FVTMS + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 162 LDGKEFLGRTLRVNLSDKPKPKE 184
+G EF GR LRVN P +E
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKRE 182
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+LY GNL + VD L L E G V+YDRDSG+S+GF FVT+S ++ I
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
+L+G + GR +RV+ ++ P+
Sbjct: 317 SLNGADLDGRQIRVSEAEARPPR 339
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 253 LNNVELEGRAIRVS 266
N E EGR +RV+
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 192 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 251
++L+VGNLSW V +L +F E G VV ARV+YD ++GRS+G+GFV S E++ A+
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 252 SLNNVELEGRAIRVSLAEGK 271
SLN +L+GR IRVS AE +
Sbjct: 338 SLNGADLDGRQIRVSEAEAR 357
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSC---------- 151
KL+ GNL ++VDSAQLA L E G+ E++EV+YD+ +G+SRGF FVTMS
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 152 -----------VEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKE 184
+ +I L G EF GR LRVN P +E
Sbjct: 160 FNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKRE 203
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+LY GNL + VD L L E G V+YDRDSG+S+GF FVT+S ++ I
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
+L+G + GR +RV+ ++ P+
Sbjct: 338 SLNGADLDGRQIRVSEAEARPPR 360
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 241
KLFVGNLS+ V S L Q+F+ G V V+YD TGRSRG+GFV S
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 148
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP V L L EE G + ++ DRDSG S+G+AFV + IE
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L KEF G+T+R +LS ET+++LF+GN+ T + +V ++ G V
Sbjct: 176 ELHSKEFKGKTIRCSLS-----------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 220 GARVLYDG-ETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 273
++ D T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 281
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYDR-DSGKSRGFAFV---TMSCVE-- 153
+L+ GN+P + + +IE+ G E IE++ D ++ ++RGFAFV +C +
Sbjct: 196 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 255
Query: 154 -----DCNTVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSES 207
D N +E G V +D K P+ L+V N+ ++E
Sbjct: 256 RQKMIDSNFKLE--------GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 307
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++FQ +G V +++ G R +GFV Y++RS A+ E+ G+ + V L
Sbjct: 308 LKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 268 AE 269
A+
Sbjct: 366 AK 367
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 177 SDKPKPKEPLYPETEHK-------------LFVGNLSWTVTSESLIQVFQEYGTVVGARV 223
D KP P+ E K +F+G L V E L + +E G + R+
Sbjct: 88 DDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRL 147
Query: 224 LYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D ++G S+GY FV + + + A+ L++ E +G+ IR SL+E K
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP V L L EE G + ++ DRDSG S+G+AFV + IE
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L KEF G+T+R +LS ET+++LF+GN+ T + +V ++ G V
Sbjct: 176 ELHSKEFKGKTIRCSLS-----------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 220 GARVLYDG-ETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 273
++ D T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 281
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYDR-DSGKSRGFAFV---TMSCVE-- 153
+L+ GN+P + + +IE+ G E IE++ D ++ ++RGFAFV +C +
Sbjct: 196 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 255
Query: 154 -----DCNTVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSES 207
D N +E G V +D K P+ L+V N+ ++E
Sbjct: 256 RQKMIDSNFKLE--------GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 307
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++FQ +G V +++ G R +GFV Y++RS A+ E+ G+ + V L
Sbjct: 308 LKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 268 AE 269
A+
Sbjct: 366 AK 367
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 177 SDKPKPKEPLYPETEHK-------------LFVGNLSWTVTSESLIQVFQEYGTVVGARV 223
D KP P+ E K +F+G L V E L + +E G + R+
Sbjct: 88 DDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRL 147
Query: 224 LYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D ++G S+GY FV + + + A+ L++ E +G+ IR SL+E K
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP V L L EE G + ++ DRDSG S+G+AFV + IE
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L KEF G+T+R +LS ET+++LF+GN+ T + +V ++ G
Sbjct: 156 ELHSKEFKGKTIRCSLS-----------ETKNRLFIGNIPKNWTEDEFRKVIEDVGPGDP 204
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 273
T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 205 TN------TTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 253
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P ++F+G L V E L + +E G + R++ D ++G S+GY FV + + +
Sbjct: 92 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 151
Query: 248 TALISLNNVELEGRAIRVSLAEGK 271
A+ L++ E +G+ IR SL+E K
Sbjct: 152 KAIEELHSKEFKGKTIRCSLSETK 175
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFV---TMSCVE---- 153
+L+ GN+P + + +IE+ G + ++RGFAFV +C +
Sbjct: 176 NRLFIGNIPKNWTEDEFRKVIEDVGPGDPTNTT------RNRGFAFVLYYNNACADYSRQ 229
Query: 154 ---DCNTVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSESLI 209
D N +E G V +D K P+ L+V N+ ++E L
Sbjct: 230 KMIDSNFKLE--------GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLK 281
Query: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
++FQ +G V +++ G R +GFV Y++RS A+ E+ G+ + V LA+
Sbjct: 282 ELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 339
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y VD L + G ++V+ ++ +G+ G+ F+ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 163 DGKEFLGR--TLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EYGTVV 219
+G + G T R+N + ++ + +H +FVG+L+ VT L + F+ Y +V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
GA+V+ D TGRS+GYGFV +++ SE A+ +N + R +R+S A K++
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL + +L +YGS V+ D D GKSR F FV ED +E
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVE 283
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKE-PLYPETEH------------KLFVGNLSWTVTSES 207
L+GK+F + V + K +E L E L+V NL TVT E
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++F E+GT+ +V+ D +G S+G GFV +S SE L +N + G+ + V+L
Sbjct: 344 LRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 268 AEGK 271
A+ K
Sbjct: 403 AQRK 406
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G+L ++V +QL E + V D + S G+ +V S +D ++ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
+ G+ +R+ S + LFV NL +V +++L + F GT+V +
Sbjct: 108 NYSYLNGKMIRITYSSR---DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCK 164
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
V D G+SRGYGFV + + A+ LN L + I V
Sbjct: 165 VATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L+VG+L + VT L F E VV RV D T S GYG+V YS + E A+ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 254 NNVELEGRAIRVS 266
N L G+ IR++
Sbjct: 108 NYSYLNGKMIRIT 120
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y VD L + G ++V+ ++ +G+ G+ F+ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 163 DGKEFLGR--TLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EYGTVV 219
+G + G T R+N + ++ + +H +FVG+L+ VT L + F+ Y +V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
GA+V+ D TGRS+GYGFV +++ SE A+ +N + R +R+S A K++
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL +V L L +YG+ + V+ D G+SRGF FV E+ +E
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAME 260
Query: 161 NLDG------KEFLGRTLRVN-----LSDKPKPKEPLYPETE-HKLFVGNLSWTVTSESL 208
+L G K F+G+ L+ + L K P L+V NLS ++ L
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRL 320
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
++F YG +V A+V+ E GRS+G+GFVC+S E + A LN ++G+ I V +A
Sbjct: 321 REIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 269 EGK 271
E K
Sbjct: 380 ERK 382
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ G L SA+ +YG ++ DR +G+ RGF FVT + + VI+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
D +G+ + + + P+ K+FVG + +V + + F ++G +
Sbjct: 102 -DNHIIIGKQVEIKRT-IPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
+++ D TGRSRG+GFV Y ++ L N +EL G + + AE K+
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 177 SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
DK +P ++ K+FVG L+ TS ++ F +YG + + ++ D +TG+ RG+G
Sbjct: 27 DDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFG 86
Query: 237 FVCYSKRSELETALISLNNV 256
FV Y+ S ++ +I N++
Sbjct: 87 FVTYADSSVVD-KVIQDNHI 105
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G G +V+ ++ +G+ G+ F+ + V++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 163 DG---KEFLGRTLRVN---LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EY 215
+ F + R+N LS K + ++ +FVG+L+ VT L++ F+ Y
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDD----SPDYTIFVGDLAADVTDYILLETFRASY 179
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
+V GA+V+ D TGR++GYGFV +S SE A+ +N V R +R+ A K+
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L +D + + + G A +V+ ++ +G+S G+ F+ V++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 163 DGKEFLG--RTLRVNLSDKPKPKEPLYPE-TEHKLFVGNLSWTVTSESLIQVFQE-YGTV 218
+G +T R+N + ++ E +H +FVG+L+ VT L F+ YG+V
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
GA+V+ D TGRS+GYGFV ++ +E A+ +N R +R+ A K +
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNA 236
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 YGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK-- 181
YGS + +V+ DR +G+S+G+ FV + + + ++G+ R +R+ +
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 182 PKEP-LYPETEHK-----------LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGET 229
P +P +Y T+ +FVG L VT + L +F ++G ++ ++
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP----- 292
Query: 230 GRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
+ GFV Y+ ++ E AL LN +L G++IR+S
Sbjct: 293 -PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLS 328
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G G +V+ ++ +G+ G+ F+ + V++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 163 DG---KEFLGRTLRVN---LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EY 215
+ F + R+N LS K + ++ +FVG+L+ VT L++ F+ Y
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDD----SPDYTIFVGDLAADVTDYILLETFRASY 179
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
+V GA+V+ D TGR++GYGFV +S SE A+ +N V R +R+ A K+
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 29/183 (15%)
Query: 103 LYFGNLPYSV-DSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++ G+L V D L Y S + +V+ DR +G+++G+ FV S + +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 162 LDGKEFLGRTLRVNLSDKPK------------------PKEPLYPETEHKLFVGNLSWTV 203
++G R +R+ + K +P +FVG L +V
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDP----NNTTVFVGGLDASV 272
Query: 204 TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
T + L VF +YG +V ++ + GFV +S++S E AL LN V+L G +
Sbjct: 273 TDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 264 RVS 266
R+S
Sbjct: 327 RLS 329
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGK-SRGFAFVTMSCVEDCNTVI 159
T LY NL V L E+G +++ + +D + RG+AFV ED
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFG--KIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258
Query: 160 ENLDGKEFLGRTLRVNLSDKPKPKEPLYPET------EHKL-------FVGNLSWTVTSE 206
E ++G +F + L V + K +E L E E K+ +V N++ VT E
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L + F + GT+ +++ D E G+S+G+GFVC+S E A+ + + G+ + V+
Sbjct: 319 ELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
Query: 267 LAEGK 271
+A+ K
Sbjct: 378 IAQKK 382
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 12/167 (7%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G+L SV L E+ S + + D SG+S + + +D N IE
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEH----KLFVGNLSWTVTSESLIQVFQEYGTV 218
+ G+ +RV S + P+ +FV NL +VT+ L +F+++G +
Sbjct: 86 NNSLLNGKMIRVMWSVRA-------PDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNI 138
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
V +V E G+SRGYGFV + + A+ +LN+ + + I V
Sbjct: 139 VSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ G L + +YG ++ DR +G+ RGF F+T + + VIE+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 162 ---LDGKEF-LGRTLRV----NLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ 213
++GK+ + RT+ N S K K K+FVG + TVT + L F
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTK---------KIFVGGIPSTVTEDELKDFFA 130
Query: 214 EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
+YG VV +V+ D ET RSRG+GFV + ++ L N +++ + + AE K+S
Sbjct: 131 KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKS 190
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 46/76 (60%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVG LSW SL Q F +G V A V+ D ETGRSRG+GFV +S A+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 253 LNNVELEGRAIRVSLA 268
++ EL GR IRV+LA
Sbjct: 96 MDGKELNGRQIRVNLA 111
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+KL+ G L + D + L +G V+ DR++G+SRGF FV+ SC + N I+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 161 NLDGKEFLGRTLRVNLS 177
+DGKE GR +RVNL+
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 46/76 (60%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVG LSW SL Q F +G V A V+ D ETGRSRG+GFV +S A+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 253 LNNVELEGRAIRVSLA 268
++ EL GR IRV+LA
Sbjct: 96 MDGKELNGRQIRVNLA 111
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+KL+ G L + D + L +G V+ DR++G+SRGF FV+ SC + N I+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 161 NLDGKEFLGRTLRVNLS 177
+DGKE GR +RVNL+
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 55/81 (67%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
+ E++ F+G L+WT + L F++YG +V A+V+ D +GRSRG+GF+ + ++ ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 249 ALISLNNVELEGRAIRVSLAE 269
A+ ++N ++L+GR I V A+
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQ 84
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ V L + G E +++ S + FV I +L
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
+G+ G+ ++VN + +E + +FVG+LS VT +L Q F + + AR
Sbjct: 117 NGRHLFGQPIKVNWAYATGQREDT--SSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDAR 174
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRSRG+GFV + + + +TA+ +N L R IR + A
Sbjct: 175 VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 37/196 (18%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ G+L V A L + S V++D+ +G+SRGF FV+ +D T I +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 163 DGKEFLGRTLRVNLSDK------------------------PKPKEPLYPETEHK----- 193
+GK R +R N + K KE L ET
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 194 -LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
++VGNL+ VT L + F +GA V+ + R +G+GFV Y+ E A I
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFH----ALGAGVIEEVRVQRDKGFGFVRYNTHPEAALA-IQ 320
Query: 253 LNNVE--LEGRAIRVS 266
+ N + L R I+ S
Sbjct: 321 MGNTQPYLFNRQIKCS 336
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 248 TALISLNNVELEGRAIRVSLAEGKRS 273
A+ +N EL+GR I V+ A+ + S
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGS 87
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ + L ++G +++ DR+SG+SRGF FVT + IE
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 162 LDGKEFLGRTLRVN 175
++GKE GR + VN
Sbjct: 67 MNGKELDGRVITVN 80
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 248 TALISLNNVELEGRAIRVSLAE 269
A+ +N EL+GR I V+ A+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ + L ++G +++ DR+SG+SRGF FVT + IE
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 162 LDGKEFLGRTLRVN 175
++GKE GR + VN
Sbjct: 67 MNGKELDGRVITVN 80
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 248 TALISLNNVELEGRAIRVSLAE 269
A+ +N EL+GR I V+ A+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ + L ++G +++ DR+SG+SRGF FVT + IE
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 162 LDGKEFLGRTLRVN 175
++GKE GR + VN
Sbjct: 67 MNGKELDGRVITVN 80
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G L + D A L +G +V+ DR++G+SRGF FV + I
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP 185
+DGKE GR +RVN ++ +P P
Sbjct: 95 EMDGKELNGRHIRVNPAND-RPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G L + D A L +G +V+ DR++G+SRGF FV + I
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP 185
+DGKE GR +RVN ++ +P P
Sbjct: 95 EMDGKELNGRHIRVNPAND-RPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G L + D A L +G +V+ DR++G+SRGF FV + I
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP 185
+DGKE GR +RVN ++ +P P
Sbjct: 95 EMDGKELNGRHIRVNPAND-RPSAP 118
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL S L EYG V+ D + GKS+GF FV +D +E
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Query: 161 NLDGKEF------LGRT---------LRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTS 205
+L+G +F +GR LRV K + + L+V NL +++
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS--NLYVKNLDPSISD 331
Query: 206 ESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
E L ++F +GTV ++V+ D G S+G GFV ++ E A+ L+ +E + + V
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Query: 266 SLAEGK 271
++A+ K
Sbjct: 391 AIAQRK 396
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G+L ++V +QL + G+ + V D + +S G+ +V + +D I+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
L+ G+ +RV S ++P + +F+ NL ++ ++L F +G +V
Sbjct: 96 ELNYIPLYGKPIRVMYSH----RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV 151
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D +G+S+GYGFV Y+ + A+ LN + L + + V
Sbjct: 152 SCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LSW SL F +G VV A+V+ D ETGRSRG+GFV ++ A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
++ EL GR IRV+ A + S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G L + D A L +G +V+ DR++G+SRGF FV + I
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 161 NLDGKEFLGRTLRVN-LSDKP 180
+DGKE GR +RVN +D+P
Sbjct: 95 EMDGKELNGRHIRVNPANDRP 115
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+ LY G+L SV+ + L L + + V D + +S G+A+V + ED + +E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
+L+ R +R+ LS++ P L + +F+ NL ++ +++L + F +GT++
Sbjct: 118 SLNYAPIRDRPIRIMLSNR-DPSTRL--SGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D GRS+GYGFV + K + A+ LN + L + + V
Sbjct: 175 CKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NLP + +L +YG V+ D+ SG SR F FV E +E
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 297
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHK------------LFVGNLSWTVTSES 207
++G L V + K +E L + E + L++ NL +V E
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++F EYG V +V+ + + G SRG+GFV YS E A+ +N + + + V+L
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 268 AEGK 271
A+ K
Sbjct: 417 AQRK 420
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+ LY G+L SV+ + L L + + V D + +S G+A+V + ED + +E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
+L+ R +R+ LS++ P L + +F+ NL ++ +++L + F +GT++
Sbjct: 118 SLNYAPIRDRPIRIMLSNR-DPSTRL--SGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D GRS+GYGFV + K + A+ LN + L + + V
Sbjct: 175 CKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NLP + +L +YG V+ D+ SG SR F FV E +E
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 297
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHK------------LFVGNLSWTVTSES 207
++G L V + K +E L + E + L++ NL +V E
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++F EYG V +V+ + + G SRG+GFV YS E A+ +N + + + V+L
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 268 AEGK 271
A+ K
Sbjct: 417 AQRK 420
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFA-FVTMSCVEDCNTVIEN 161
+Y GN+ V L + G E +++ R S GF + C + I
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLI--RKDKSSYGFVHYFDRRCA---SMAIMT 119
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
L+G+ G+ ++VN + +E + +FVG+LS VT +L F + + A
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDT--SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDA 177
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
RV++D +TGRSRG+GFV + + + +TA+ +N + R IR + A
Sbjct: 178 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NLP + +L ++G V+ D+ SG SR F FV C E + +E
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVE 287
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHK------------LFVGNLSWTVTSES 207
++G L V + K +E L + E + L++ NL +V E
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++F EYG V ++V+ + + G SRG+GFV YS E AL +N + + + ++L
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 268 AEGK 271
A+ K
Sbjct: 407 AQRK 410
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+ LY G+L V A L L + + + V D++ +S G+A++ S D +E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L+ R +R+ LS++ P L + +F+ NL ++ +++L + F +GT++
Sbjct: 108 ALNYTPLFDRPIRIMLSNR-DPSTRL--SGKGNIFIKNLDASIDNKALFETFSSFGTILS 164
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D TGRS+GYGFV + K + A+ LN + + + + V
Sbjct: 165 CKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
+ E++ FVG L+W +L F +YG V+ ++++ D ETGRSRG+GFV + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 249 ALISLNNVELEGRAIRVSLAE 269
A+ +N +L+GR+I V+ A+
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ D L +YG +++ DR++G+SRGF FVT + IE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 162 LDGKEFLGRTLRVN 175
++G++ GR++ VN
Sbjct: 69 MNGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
+ E++ FVG L+W +L F +YG V+ ++++ D ETGRSRG+GFV + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 249 ALISLNNVELEGRAIRVSLAE 269
A+ +N +L+GR+I V+ A+
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ D L +YG +++ DR++G+SRGF FVT + IE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 162 LDGKEFLGRTLRVN 175
++G++ GR++ VN
Sbjct: 69 MNGQDLDGRSITVN 82
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIE--VLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
KL+ G + + + +L +G E+IE +L DR +G++RGF FV + VI
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFG--EVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 160 ---ENLDG-----KEFLGRTLR--VNLSDKPKPK-EPLYPETEHKLFVGNLSWTVTSESL 208
N+DG K+ + R + VN S+ + P P K+FVG L +VT
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F+++GT V+YD T R RG+GF+ Y +E L+ + EL G+ + V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH-ELNGKMVEVKRA 183
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIE--VLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
KL+ G + + + +L +G E+IE +L DR +G++RGF FV + VI
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFG--EVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 160 ---ENLDG-----KEFLGRTLR--VNLSDKPKPK-EPLYPETEHKLFVGNLSWTVTSESL 208
N+DG K+ + R + VN S+ + P P K+FVG L +VT
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F+++GT V+YD T R RG+GF+ Y +E L+ + EL G+ + V A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH-ELNGKMVEVKRA 183
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ V L + G E +++ S + FV I +L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
+G+ G+ ++VN + +E + +FVG+LS VT L F Y T AR
Sbjct: 112 NGRHLFGQPIKVNWAYASGQREDT--SSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR 169
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRSRG+GFV + + + +TA+ + L R IR + A
Sbjct: 170 VMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ V L + G E +++ S + FV I +L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
+G+ G+ ++VN + +E + +FVG+LS VT L F Y T AR
Sbjct: 112 NGRHLFGQPIKVNWAYASGQREDT--SSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR 169
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRSRG+GFV + + + +TA+ + L R IR + A
Sbjct: 170 VMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 173 RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRS 232
+V+LS P + + + KLF+G +++++ +SL + F +YG VV RV+ D ETGRS
Sbjct: 22 QVSLS-SPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80
Query: 233 RGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
RG+GFV ++ +A+ +L+ +L GR ++V+ A
Sbjct: 81 RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+KL+ G + YS+D L +YG V+ DR++G+SRGF FVT + E ++ I+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 161 NLDGKEFLGRTLRVNLSD 178
LDG++ GR ++VN ++
Sbjct: 100 ALDGRDLHGRVVKVNYAN 117
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELI--EVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++ G+L + +D A L E++ +V+ ++++G S G+ FV + + V+
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 161 NLDGKEF--LGRTLRVN---LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE- 214
+G + R+N S K E P+ +FVG+LS V+ L + F E
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL--SIFVGDLSPDVSDNLLHETFSEK 220
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
Y +V A+V+ D TGRS+GYGFV + +E A+ +N V+ RA+R+ A +++
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 279
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L +D L + G A +V+ ++ +G S G+ F+ ++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 163 DGKEFLG--RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE-YGTVV 219
+G + R+N + + EH +FVG+L+ VT L + F+ Y +V
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
GA+V+ D TGRS+GYGFV ++ SE A+ +N R +R A K+
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 124 YGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKP- 182
Y S + +V+ DR +G+S+G+ FV + + + ++G+ R +R + KP
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 183 --KEPLYPETEHK----------LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETG 230
+ Y T+ +FVG + +VT + L VF ++G +V ++
Sbjct: 257 TMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIP------ 310
Query: 231 RSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
+ GFV Y+ R+ E AL LN +L G++IR+S
Sbjct: 311 AGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L + +D L G ++V+ ++ + +S G+ FV V++N
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 163 DGKEFLG--RTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE-YGTV 218
G + R+N + K + + +FVG+LS VT L + F + Y +V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
A+V+ D TGRS+GYGFV + +E AL +N R +RV +A KR+
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELI--EVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++ G+L + +D A L E++ +V+ ++++G S G+ FV + + V+
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 161 NLDGKEFLG--RTLRVN---LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE- 214
+G + R+N S K E P+ +FVG+LS V+ L + F E
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL--SIFVGDLSPDVSDNLLHETFSEK 220
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
Y +V A+V+ D TGRS+GYGFV + +E A+ +N V+ RA+R+ A +++
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 279
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 122 EEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK 181
E+Y S + +V+ D ++G+S+G+ FV + + ++G + R +R+ + K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 182 -----------PKEPL-YPETE---HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYD 226
P L PE + +FVG L +VT E L Q F E+G +V ++
Sbjct: 279 TNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV- 337
Query: 227 GETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+G GFV + R E AL LN + + +R+S
Sbjct: 338 -----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG 374
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ G L + +YG ++ DR +G+ RGF F+T + + VIE+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 162 ---LDGKEF-LGRTLRV----NLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ 213
++GK+ + RT+ N S K K K+FVG + TVT + L F
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTK---------KIFVGGIPSTVTEDELKDFFA 130
Query: 214 EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVEL 258
+YG VV +V+ D ET RSRG+GFV + ++ L N +++
Sbjct: 131 KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM 175
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL S+ +L + E+G ++ D + GKS+GF FV +D ++
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHK------------------LFVGNLSWT 202
L+GK F + V + K + ETE K L+V NL +
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSER-----ETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 203 VTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 262
VT + L + F +GT+ +V+ D +G SRG GFV +S E A+ +N + +
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKP 396
Query: 263 IRVSLAEGK 271
+ V+LA+ K
Sbjct: 397 LYVALAQRK 405
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G+L +V +QL + G + V D + +S G+ +V + +D + +
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
L+ GR +RV S ++P L +F+ NL ++ ++L + F +G ++
Sbjct: 105 ELNFMALNGRAIRVMYSV----RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D +G+S+GYGFV Y + A+ LN + L + + V
Sbjct: 161 SCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL S+ +L + E+G ++ D + GKS+GF FV +D ++
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHK------------------LFVGNLSWT 202
L+GK F + V + K + ETE K L+V NL +
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSER-----ETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 203 VTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 262
VT + L + F +GT+ +V+ D +G SRG GFV +S E A+ +N + +
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKP 396
Query: 263 IRVSLAEGK 271
+ V+LA+ K
Sbjct: 397 LYVALAQRK 405
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G+L +V +QL + G + V D + +S G+ +V + +D + +
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
L+ GR +RV S ++P L +F+ NL ++ ++L + F +G ++
Sbjct: 105 ELNFMALNGRAIRVMYSV----RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D +G+S+GYGFV Y + A+ LN + L + + V
Sbjct: 161 SCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELI--EVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++ G+L +D A L E++ +V+ ++ +G S G+ FV + + V++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 161 NLDGKEF--LGRTLRVN---LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE- 214
+G + R+N S K E P+ +FVG+L+ V+ L + F E
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDL--SIFVGDLAPDVSDALLHETFSEK 222
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
Y +V A+V+ D TGRS+GYGFV + +E A+ +N V+ RA+R+ A +++
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 103 LYFGNLPYSVDSAQLAGLI-EEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++ G+L V A L E+Y S + +V+ D ++G+S+G+ FV + +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 162 LDGKEFLGRTLRVNLSDKPKPK----------EPLYPETEHK-----LFVGNLSWTVTSE 206
++G + R +R+ + K + +E +FVG L +VT E
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L Q F E+G +V ++ +G GFV + R E AL LN + + +R+S
Sbjct: 321 DLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 374
Query: 267 LA 268
Sbjct: 375 WG 376
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE- 160
KL+ G + + D +L YG V+ D+ +G+ RGF FV S + V++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 161 --NLDGKEF-------------LGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTS 205
++D +E GRT +N S Y +T+ K+FVG L T+T
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGD--AYNKTK-KIFVGGLPPTLTD 123
Query: 206 ESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
E Q F+ YG V ++YD T R RG+GFV + +++ L + +L G+ + V
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH-DLSGKQVEV 182
Query: 266 SLA 268
A
Sbjct: 183 KRA 185
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL +P+ +DS L + ++G E V+ DR +G+SRGF +VT + ED
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA--- 60
Query: 162 LDGKEFLG-RTLRVNLSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTV 218
L G+ FLG R L V ++ PKE + + ++FV + +V+ F+ YG +
Sbjct: 61 LKGEHFLGNRILEVKVA---TPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI 117
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D + + RG GF+ +S +E + ++ L G + V A K
Sbjct: 118 TDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRATPK 168
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL +P+ +DS L + ++G E V+ DR +G+SRGF +VT + ED
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA--- 60
Query: 162 LDGKEFLG-RTLRVNLSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTV 218
L G+ FLG R L V ++ PKE + + ++FV + +V+ F+ YG +
Sbjct: 61 LKGEHFLGNRILEVKVA---TPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI 117
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D + + RG GF+ +S +E + ++ L G + V A K
Sbjct: 118 TDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRATPK 168
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS--CVEDCNTVI 159
KL+ G + + D +L YG ++ DR +G++RGF F+ + CV + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 160 ENL-DG-----KEFLGRTLRVNLSDKPKPKEPLYP-----ETEHKLFVGNLSWTVTSESL 208
+++ DG K+ + R + L P + P K+FVG L ++T E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F ++GT+ V+YD T R RG+GF+ + ++ L + EL G+ + V A
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH-ELNGKLVEVKRA 185
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS--CVEDCNTVI 159
KL+ G + + D +L YG ++ DR +G++RGF F+ + CV + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 160 ENL-DG-----KEFLGRTLRVNLSDKPKPKEPLYP-----ETEHKLFVGNLSWTVTSESL 208
+++ DG K+ + R + L P + P K+FVG L ++T E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F ++GT+ V+YD T R RG+GF+ + ++ L + EL G+ + V A
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH-ELNGKLVEVKRA 185
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS--CVEDCNTVI 159
KL+ G + + D +L YG ++ DR +G++RGF F+ + CV + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 160 ENL-DG-----KEFLGRTLRVNLSDKPKPKEPLYP-----ETEHKLFVGNLSWTVTSESL 208
+++ DG K+ + R + L P + P K+FVG L ++T E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F ++GT+ V+YD T R RG+GF+ + ++ L + EL G+ + V A
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH-ELNGKLVEVKRA 185
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS--CVEDCNTVI 159
KL+ G + + D +L YG ++ DR +G++RGF F+ + CV + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 160 ENL-DG-----KEFLGRTLRVNLSDKPKPKEPLYP-----ETEHKLFVGNLSWTVTSESL 208
+++ DG K+ + R + L P + P K+FVG L ++T E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F ++GT+ V+YD T R RG+GF+ + ++ L + EL G+ + V A
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH-ELNGKLVEVKRA 185
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 68.6 bits (166), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
+++VGNLS T T + L + F YG VV A V+ D T RSRG+GFV YS SE E A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 253 LNNVELEGRAIRVSL 267
++ EL GR + V L
Sbjct: 64 MDGKELNGRRVSVKL 78
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T++Y GNL + L YG+ V+ DR + +SRGF FVT S + +
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 161 NLDGKEFLGRTLRVNL 176
+DGKE GR + V L
Sbjct: 63 GMDGKELNGRRVSVKL 78
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LSW+V +SL F +G V R+ YD +GRSRG+GFV +++ + +A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 253 LNNVELEGRAIRVSLA 268
++ L GR +R+S A
Sbjct: 102 MDGKGLLGRPLRISFA 117
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G L +SVD L +G + + YD+ SG+SRGF FV + D + +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 162 LDGKEFLGRTLRVNLS 177
+DGK LGR LR++ +
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVI-- 159
KL+ G + + +L +G ++ DR +G++RGF FV + V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 160 -ENLDGK-----EFLGRTLRV--NLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQV 211
+DGK + + R V N S+ P P K+FVG L+ +VT +
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPG-PSNSKKIFVGGLASSVTEAEFKKY 125
Query: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F ++G + V+YD T R RG+GF+ Y ++ L + EL G+ + V LA
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH-ELNGKMVEVKLA 181
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVI-- 159
KL+ G + + +L +G ++ DR +G++RGF FV + V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 160 -ENLDGK-----EFLGRTLRV--NLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQV 211
+DGK + + R V N S+ P P K+FVG L+ +VT +
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPG-PSNSKKIFVGGLASSVTEAEFKKY 125
Query: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F ++G + V+YD T R RG+GF+ Y ++ L + EL G+ + V LA
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH-ELNGKMVEVKLA 181
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP V L L EE G + ++ DRDSG S+G+AFV + IE
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 161 NLDGKEF-LGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-V 218
L KEF T +LS ++LF+GN+ T + +V ++ G V
Sbjct: 176 ELHSKEFKASSTANCSLS------------LSNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 219 VGARVLYDG-ETGRSRGYGFVCYSKRSELETALISL--NNVELEGRAIRVSLAEGKRS 273
++ D T R+RG+ FV Y + + + + +N +LEG A V+ A+ K S
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 281
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYDR-DSGKSRGFAFV---TMSCVE-- 153
+L+ GN+P + + +IE+ G E IE++ D ++ ++RGFAFV +C +
Sbjct: 196 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 255
Query: 154 -----DCNTVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSES 207
D N +E G V +D K P+ L+V N+ ++E
Sbjct: 256 RQKMIDSNFKLE--------GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 307
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
L ++FQ +G V +++ G R +GFV Y++RS A+ E+ G+ + V L
Sbjct: 308 LKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 268 AE 269
A+
Sbjct: 366 AK 367
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFA-FVTMSCVEDCNTVIEN 161
+Y GN+ V L + G E +++ R S GF + C + I
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLI--RKDKSSYGFVHYFDRRCA---SMAIMT 119
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG- 220
L+G+ G+ ++VN + +E + +FVG+LS VT +L F + +
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDT--SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSY 177
Query: 221 ---ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
ARV++D +TGRSRG+GFV + + + +TA+ +N + R IR + A
Sbjct: 178 YRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL + A L L E+G V+ D + GKSR F FV E T IE
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIE 177
Query: 161 NLDG-----KEF-LGRTLR-VNLSDKPKPK---EPLYPETEHK----LFVGNLSWTVTSE 206
++G KE +GR R N ++ K K E + + + + L+V NL +V +
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L ++F E+GT+ +V+ G S+G GFV +S E A++ +N + + I VS
Sbjct: 238 KLEELFSEFGTITSCKVMVHS-NGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 267 LAEGK 271
LA+ K
Sbjct: 297 LAQCK 301
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 21/185 (11%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIE--VLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
KL+ G + + D +L +YG +L+E ++ DR +G++RGF F+ + VI
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYG--DLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 70
Query: 160 EN---LDG-----KEFLGRTLRVNLSDKPKPKEPLYPET--------EHKLFVGNLSWTV 203
+ +DG K+ + R + L P + P K+FVG L ++
Sbjct: 71 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSI 130
Query: 204 TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
T F ++GT+ V+YD T R RG+GF+ + ++ L + EL G+ +
Sbjct: 131 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH-ELNGKMV 189
Query: 264 RVSLA 268
V A
Sbjct: 190 EVKRA 194
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 21/185 (11%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIE--VLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
KL+ G + + D +L +YG +L+E ++ DR +G++RGF F+ + VI
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYG--DLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Query: 160 EN---LDG-----KEFLGRTLRVNLSDKPKPKEPLYPET--------EHKLFVGNLSWTV 203
+ +DG K+ + R + L P + P K+FVG L ++
Sbjct: 74 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSI 133
Query: 204 TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
T F ++GT+ V+YD T R RG+GF+ + ++ L + EL G+ +
Sbjct: 134 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH-ELNGKMV 192
Query: 264 RVSLA 268
V A
Sbjct: 193 EVKRA 197
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LS+ T + L + F + G VV A+++ D + RS+G+GFV ++ E + AL+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
N +L GR I V A+ K+S
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 8/176 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + + A ++G ++ DR +G RGF FVT + V+E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 162 L----DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT 217
D K L RTL DK + + K+FVG L + + L F YG
Sbjct: 127 DHVIDDRKVDLKRTL--PRGDKDTDIKAV--SKTRKIFVGGLPPLLEEDELKNYFCVYGD 182
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
++ +++YD TGRSRG+GFV + ++ EL + + + AE KR+
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRT 238
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKE 166
+P + + G + ++ DR+S +S+G ++ V I L G+
Sbjct: 174 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQL 232
Query: 167 FLGRTLRVNLSDKPKPKEPLYPET-------EHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
FLG+ + V S+ K T + KL+VGNL + ++ L Q+F+ +G V
Sbjct: 233 FLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVE 292
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAIRVS 266
++ D ETG+ +G+GF+ + + + A I+LN +E+ GR I+VS
Sbjct: 293 LVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KLY GNL +++ QL + E +G EL+++ D ++G+ +GF F+ +E
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 162 LDGK-EFLGRTLRVN 175
L+GK E GRT++V+
Sbjct: 326 LNGKLEIAGRTIKVS 340
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG +S++ L + F +YG VV A+++ D ETGRSRG+ FV ++ E A+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 253 LNNVELEGRAIRVSLA 268
L+ +L GR IRV+ A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+K++ G + YS D L +YG +++ DR++G+SRGFAFVT + E+ + ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 161 NLDGKEFLGRTLRVNLS 177
LDG++ GR +RVN +
Sbjct: 94 -LDGQDLHGRRIRVNYA 109
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS----------- 150
KL+ G + + +L +G ++ DR +G++RGF FV +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 151 ------------------CVED-CNTVIENLDGKEFLGRTLRV--NLSDKPKPKEPLYPE 189
C D C ++ E ++ K+ + R V N S+ P P
Sbjct: 67 KHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP-GPS 125
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
K+FVG L+ +VT + F ++G + V+YD T R RG+GF+ Y ++
Sbjct: 126 NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 185
Query: 250 LISLNNVELEGRAIRVSLA 268
L + EL G+ + V LA
Sbjct: 186 LQKTFH-ELNGKMVEVKLA 203
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y G L + L L + G + V DR + + + F+ ED + I+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV-GA 221
+ + G+ +RVN + + K + LF+GNL V + L F +G +
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSL----DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNP 142
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+++ D +TG SRG+GF+ Y + A+ S+ L R I VS A K
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
E ++FVG LSW VT L F YG + +++ +TGR RG+GF+ ++ R + A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 251 ISLNNVELEGRAIRVSLAEGK 271
++ EL + I V+ AE K
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G L + V QL + YG +++ RD+G+ RGF F+T + + I+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
++ G+E + + VN K +PK
Sbjct: 72 HMHGRELGNKVISVN---KAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
E ++FVG LSW VT L F YG + +++ +TGR RG+GF+ ++ R + A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 251 ISLNNVELEGRAIRVSLAEGK 271
++ EL + I V+ AE K
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G L + V QL + YG +++ RD+G+ RGF F+T + + I+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
++ G+E + + VN K +PK
Sbjct: 72 HMHGRELGNKVISVN---KAEPK 91
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 8/177 (4%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L + +D L ++V+ ++ + +S G+ FV +++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 163 DGKEFLG--RTLRVN---LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EYG 216
G + R+N S K P+ +FVG+L+ V+ L++ F Y
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDL--SIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 217 TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
+V GA+V+ D TGRS+GYGFV + +E A+ +N R +RV +A KR+
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ SV+ ++L+ L E +G I LY + KSRGF ++ + + + L
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGE---IRSLYT--ACKSRGFVMISYYDIRAAHAAMRAL 241
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
RTL ++ S PK + L + N+ TV+++ L+Q+F YG + R
Sbjct: 242 QNTLLRKRTLDIHFS-IPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR 300
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
ET R + F+ Y + ETAL +LN E+ G+ I++ L+
Sbjct: 301 -----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 341
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ SV+ ++L+ L E +G I LY + KSRGF ++ + + + L
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGE---IRSLYT--ACKSRGFVMISYYDIRAAHAAMRAL 241
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
RTL ++ S PK + L + N+ TV+++ L+Q+F YG + R
Sbjct: 242 QNTLLRKRTLDIHFS-IPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR 300
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
ET R + F+ Y + ETAL +LN E+ G+ I++ L+
Sbjct: 301 -----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 341
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ SV+ ++L+ L E +G I LY + KSRGF ++ + + + L
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGE---IRSLYT--ACKSRGFVMISYYDIRAAHAAMRAL 254
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
RTL ++ S PK + L + N+ TV+++ L+Q+F YG + R
Sbjct: 255 QNTLLRKRTLDIHFS-IPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR 313
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
ET R + F+ Y + ETAL +LN E+ G+ I++ L+
Sbjct: 314 -----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 354
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
E E++ FVG L+W E L + F ++G V+ ++++ D E+GRSRG+GFV + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 248 TALISLN 254
A+ +N
Sbjct: 62 DAIEEMN 68
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + QL L E+ + ++ ++ + RG F+T ED + VI +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
K+ L L+V +D + EHKLFVG L V+ + +F EYGT+
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELER------LEHKLFVGMLPKNVSETEVQSLFSEYGTI 126
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 254
++L G S+G F+ Y + + A+ +LN
Sbjct: 127 KDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEALN 161
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LF+ N+ + L FQ +G V+ A+V D TG S+ +GF+ Y ++ + A+ ++
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 254 NNVELEGRAIRVSL 267
N +L G+ ++V L
Sbjct: 392 NGCQLSGKKLKVQL 405
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + L YG+ V ++ +GK RGF FV + DC+ V
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFA--NDCDVVKAL 64
Query: 162 LDGKEFLGRTLRV-------NLSDKPKPKEPLYPETEH------------------KLFV 196
D LG+ + V L +P + L + + K+FV
Sbjct: 65 RDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 197 GNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV 256
G LS T E F+ +G V++DG T R RG+GFV Y +E + S N
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS-NFH 183
Query: 257 ELEGRAIRVSLA 268
EL + + V A
Sbjct: 184 ELSDKRVEVKRA 195
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + +QL L +E+ + + ++ D+ + SRG F+ E+ + ++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
K+ L L+V +D + EHKLFVG L V+ + +F +YGT+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELER------LEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAI 263
++L G S+G F+ Y + + +A+ S+N ++EG +
Sbjct: 133 KDLQIL-RGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTV 177
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
+FVGN+ + T E L ++ E G VV R++ D ETG+ +GYGF Y +A +L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 254 NNVELEGRAIRVSLAEGKR 272
+ E+ GR +RV AE +
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG LS + E L + F +G +V A V+ D E+G SRG+GFV Y A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 250 LISLNNVELEGRAIRVSLAE 269
+ ++ N EL+GR I V A+
Sbjct: 94 MQAMQNKELDGRIIGVHPAD 113
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+K++ G L S D L +G V+ DR+SG SRGF FVT +E N ++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 161 NLDGKEFLGRTLRVNLSD 178
+ KE GR + V+ +D
Sbjct: 96 AMQNKELDGRIIGVHPAD 113
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + +QL L +E+ + + ++ D+ + SRG F+ E+ + ++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
K+ L L+V +D + EHKLFVG L V+ + +F +YGT+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELER------LEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEGRAI 263
++L G S+G F+ Y + + +A+ S+N ++EG +
Sbjct: 133 KDLQIL-RGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTV 177
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LF+ N+ + L FQ +G V+ A+V D TG S+ +GFV Y ++ + A+ +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 254 NNVELEGRAIRVSL 267
N L G+ ++V L
Sbjct: 411 NGRHLGGKKLKVQL 424
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K++VG L WT E LI F+ +G ++ V+ D ET RS+GYGFV + K +E T
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF-KDAESATRACK 72
Query: 253 LNNVELEGRAIRVSLA 268
N +EGR LA
Sbjct: 73 DPNPTIEGRITNCKLA 88
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + QL L E+ + ++ ++ + RG F+T ED + VI +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYP---ETEHKLFVGNLSWTVTSESLIQVFQEY 215
K+ L L+V +D + + EHKLFVG L V+ + +F EY
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEY 132
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 254
GT+ ++L G S+G F+ Y + + A+ +LN
Sbjct: 133 GTIKDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LF+ N+ + L FQ +G V+ A+V D TG S+ +GF+ Y ++ + A+ ++
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 254 NNVELEGRAIRVSL 267
N +L G+ ++V L
Sbjct: 401 NGCQLSGKKLKVQL 414
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
+LFV LS T +SL Q+F +G + AR++ D ET R +G+GF+ + + AL S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 253 LNNVELEGRAIRVSLAE 269
L+ ++GR I V +A+
Sbjct: 68 LDGKIVDGRLIFVEVAK 84
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 181 KPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCY 240
KP Y ET L++G L + + LI +F +G +V A+V+ D TG S+GYGFV Y
Sbjct: 471 KPPSKEYDET--NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
Query: 241 SKRSELETALISLNNVELEGRAIRVSLA 268
+ TA+ ++N EGR + V +A
Sbjct: 529 ADVQMANTAVQAMNGYRFEGRTLAVRIA 556
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G LP ++ L L +G + +V+ DR +G S+G+ FV + V+ NT ++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 161 NLDGKEFLGRTLRVNLSDK 179
++G F GRTL V ++ K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 181 KPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCY 240
KP Y ET L++G L + + LI +F +G +V A+V+ D TG S+GYGFV Y
Sbjct: 471 KPPSKEYDET--NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
Query: 241 SKRSELETALISLNNVELEGRAIRVSLA 268
+ TA+ ++N EGR + V +A
Sbjct: 529 ADVQMANTAVQAMNGYRFEGRTLAVRIA 556
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G LP ++ L L +G + +V+ DR +G S+G+ FV + V+ NT ++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 161 NLDGKEFLGRTLRVNLSDK 179
++G F GRTL V ++ K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 181 KPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCY 240
KP Y ET L++G L + + LI +F +G +V A+V+ D TG S+GYGFV Y
Sbjct: 471 KPPSKEYDET--NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
Query: 241 SKRSELETALISLNNVELEGRAIRVSLA 268
+ TA+ ++N EGR + V +A
Sbjct: 529 ADVQMANTAVQAMNGYRFEGRTLAVRIA 556
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G LP ++ L L +G + +V+ DR +G S+G+ FV + V+ NT ++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 161 NLDGKEFLGRTLRVNLSDK 179
++G F GRTL V ++ K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 15/173 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P L G G + ++ ++DSG +G+AFVT + I+
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L+ +F G+ ++ + + + +H+LF+GN+ + + G V
Sbjct: 152 TLNNTDFRGKRIKCSTT-----------QAKHRLFLGNVPRNWMESDIKKAANRIGPGVQ 200
Query: 221 ARVLYD--GETGRSRGYGFVCYSKRSELETALISLNN--VELEGRAIRVSLAE 269
L GR+RG+ F+ Y + E + ++N +L+ A VS AE
Sbjct: 201 IVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAE 253
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 15/173 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P L G G + ++ ++DSG +G+AFVT + I+
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L+ +F G+ ++ + + + +H+LF+GN+ + + G V
Sbjct: 152 TLNNTDFRGKRIKCSTT-----------QAKHRLFLGNVPRNWMESDIKKAANRIGPGVQ 200
Query: 221 ARVLYD--GETGRSRGYGFVCYSKRSELETALISLNN--VELEGRAIRVSLAE 269
L GR+RG+ F+ Y + E + ++N +L+ A VS AE
Sbjct: 201 IVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAE 253
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W SE+L + F +YG ++ A V+ D TGRS+GYGFV + A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
+ ++GR +LA RS
Sbjct: 85 PTPI-IDGRRANCNLASLGRS 104
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W SE+L + F +YG ++ A V+ D TGRS+GYGFV + A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
+ ++GR +LA RS
Sbjct: 85 PTPI-IDGRRANCNLASLGRS 104
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W SE+L Q F++YG ++ A V+ D TGRS+GYGFV + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 253 LNNVELEGRAIRVSLA 268
+ ++GR +LA
Sbjct: 85 PTPI-IDGRRANCNLA 99
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 6/175 (3%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G++P + ++ E++G+ + ++ D+ +G+ +G FV + +D + I
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 162 LDGKEFL-GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L + L G T V + +E + E KLFVG+L+ T + + ++F ++G V
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIG-TLEFKLFVGSLNKQATEKEVEEIFLQFGHVED 164
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEG--RAIRVSLAEGKR 272
++ D E +SRG GFV YS + A+ LN + G + + V AE KR
Sbjct: 165 VYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 218
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVGNL+W T++ L + F+++G VV A V+ + GRS+GYGF+ + AL +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 253 LNNVELEGRAIRVSLA 268
+ ++GR +LA
Sbjct: 73 SKPI-IDGRTTNCNLA 87
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W +++ + F+++G +V A V+ D TGRS+GYGFV + + A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 253 LNNVELEGRAIRVSLA 268
+N V ++GR +LA
Sbjct: 83 MNPV-IDGRRANCNLA 97
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T +LFV LS T+E L F +G +V ARV+ D ++GRS+G+GFV Y+ + E A
Sbjct: 32 TSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
Query: 250 LISLNNVELEGRAIRV 265
+N L+G I V
Sbjct: 92 KAEMNAKFLDGWVIFV 107
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W +E+LI+ F++YG + + ++D +G+S+GYGF+ Y RS AL
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 6/175 (3%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G++P + ++ E++G+ + ++ D+ +G+ +G FV + +D + I
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 162 LDGKEFL-GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L + L G T V + +E + E KLFVG+L+ T + + ++F ++G V
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIG-TLEFKLFVGSLNKQATEKEVEEIFLQFGHVED 239
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEG--RAIRVSLAEGKR 272
++ D E +SRG GFV YS + A+ LN + G + + V AE KR
Sbjct: 240 VYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 27/140 (19%)
Query: 160 ENLDGKEFLGRTLRVNLSDKP--KP-KEPL------YPETEH---------------KLF 195
E+ D + F+G+ + + S +P P ++PL YP ++H KLF
Sbjct: 64 ESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLF 123
Query: 196 VGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNN 255
VG++ T T E + F+++G V+ ++ D TG+ +G FV Y+ + + A+ +L+N
Sbjct: 124 VGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHN 183
Query: 256 -VELEG--RAIRVSLAEGKR 272
+ L G ++V A+G+R
Sbjct: 184 QITLPGGTGPVQVRYADGER 203
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 6/175 (3%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G++P + ++ E++G+ + ++ D+ +G+ +G FV + +D + I
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 162 LDGKEFL-GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L + L G T V + +E + E KLFVG+L+ T + + ++F ++G V
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIG-TLEFKLFVGSLNKQATEKEVEEIFLQFGHVED 239
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEG--RAIRVSLAEGKR 272
++ D E +SRG GFV YS + A+ LN + G + + V AE KR
Sbjct: 240 VYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 27/140 (19%)
Query: 160 ENLDGKEFLGRTLRVNLSDKP--KP-KEPL------YPETEH---------------KLF 195
E+ D + F+G+ + + S +P P ++PL YP ++H KLF
Sbjct: 64 ESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLF 123
Query: 196 VGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNN 255
VG++ T T E + F+++G V+ ++ D TG+ +G FV Y+ + + A+ +L+N
Sbjct: 124 VGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHN 183
Query: 256 -VELEG--RAIRVSLAEGKR 272
+ L G ++V A+G+R
Sbjct: 184 QITLPGGTGPVQVRYADGER 203
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
++FVG LS VT L + F +G ++ +++ + +TGRSRG+GF+ ++ R ++ ++
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 253 LNNVELEGRAIRVSLAEGK 271
++ + R I V+ AE K
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 125 GSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK--- 181
G + ++ DR S +SRG +V I L G+ LG+ + V S+ K
Sbjct: 255 GKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLV 313
Query: 182 --------------PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDG 227
P Y +L+VGNL ++ + L +VF+ +G+V +V D
Sbjct: 314 QSTTAAAGAGGMLGP----YSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD- 368
Query: 228 ETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
ETG +G+GFV +++ + AL +E+ GRAI+VS
Sbjct: 369 ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 407
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+LY GNL ++ L + E +GS EL++V D ++G +GF FV + +ED + N
Sbjct: 335 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL-N 392
Query: 162 LDGK-EFLGRTLRVN 175
L+G+ E GR ++V+
Sbjct: 393 LNGQLEIAGRAIKVS 407
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + D L +G + V+ ++ +G+ RGF FV S + V+++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 162 ---LDGKEFLGRTLRVNLSDKPKPKEPLYPETEH----------KLFVGNLSWTVTSESL 208
+D ++ + P + + + + K+FVG L +TS+
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F+ YG V A ++ D T R RG+GFV + ++ L + +L G+ + V A
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFH-DLNGKQVEVKRA 185
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
+ KLF+G +SW L + F +G V+ V+ + TGR RG+GFV +S + ++ L
Sbjct: 5 QGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL 64
Query: 251 ISLNNVE 257
++++
Sbjct: 65 QDKHHID 71
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 125 GSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK--- 181
G + ++ DR S +SRG +V I L G+ LG+ + V S+ K
Sbjct: 206 GKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLV 264
Query: 182 --------------PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDG 227
P Y +L+VGNL ++ + L +VF+ +G+V +V D
Sbjct: 265 QSTTAAAGAGGMLGP----YSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD- 319
Query: 228 ETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
ETG +G+GFV +++ + AL +E+ GRAI+VS
Sbjct: 320 ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 358
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+LY GNL ++ L + E +GS EL++V D ++G +GF FV + +ED + N
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL-N 343
Query: 162 LDGK-EFLGRTLRVN 175
L+G+ E GR ++V+
Sbjct: 344 LNGQLEIAGRAIKVS 358
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 130 IEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPK-------- 181
+ ++ DR S +SRG +V I L G+ LG+ + V S+ K
Sbjct: 249 VRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTA 307
Query: 182 ---------PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRS 232
P Y +L+VGNL ++ + L +VF+ +G+V +V D ETG
Sbjct: 308 AAGAGGMLGP----YSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLC 362
Query: 233 RGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
+G+GFV +++ + AL +E+ GRAI+VS
Sbjct: 363 KGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 396
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+LY GNL ++ L + E +GS EL++V D ++G +GF FV + +ED + N
Sbjct: 324 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL-N 381
Query: 162 LDGK-EFLGRTLRVN 175
L+G+ E GR ++V+
Sbjct: 382 LNGQLEIAGRAIKVS 396
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
+ E K++V L W +E LI F+ +G +V A+V+ DG T RS+G+GFV + E+E+
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF---REVES 62
Query: 249 ALISLNNVE--LEGRAIRVSLA 268
A + N ++GR + LA
Sbjct: 63 ATRACENPNHTIDGRTVNCKLA 84
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFV +S++ T E+L Q F +YG V+ V+ D R +G+ +V +S + E E AL+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 254 NNVELEGRAI 263
N ++GR +
Sbjct: 83 NAQLVDGRVV 92
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 183 KEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSK 242
+ P T K+FVG L+W ++ + + F ++G ++ A ++ D TG+S+GYGFV + +
Sbjct: 8 RSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF-R 66
Query: 243 RSELETALISLNNVELEGRAIRVSLAEGKR 272
S+ T ++ N ++GR ++A R
Sbjct: 67 DSDSATRAVADPNPVIDGRKANCNIASFGR 96
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 187 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 246
+PE +++LF G+L V + L + F + T A+V+ D TG+++GYGFV + ++L
Sbjct: 132 WPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADL 191
Query: 247 ETALISLNNVELEGRAIRV 265
AL +N + R I++
Sbjct: 192 AAALKEMNGKYVGNRPIKL 210
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KL++G LS SL F + V ARV+ + TGRSRGYGFV + +A+ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 253 LNNVELEGRAIRVSLAE 269
+N EL G I V++A+
Sbjct: 92 MNGQELNGFNISVNVAK 108
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W ++ + + F+++G ++ A ++ D TG+S+GYGFV + + S+ T ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF-RESDSATRAVA 76
Query: 253 LNNVELEGRAIRVSLA 268
N ++GR ++A
Sbjct: 77 DPNPVIDGRKANCNIA 92
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 5/174 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ L + L L YG E V+ D+ +GKS+G+ FVT V+ ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 162 LDGKEFLGRTLRVNL--SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K+ GR L S + + K++V N+ + + ++ L+ F YG V
Sbjct: 136 PS-KKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA-EGKR 272
+ +D TG+SRG+ Y + AL V ++G+ + LA +GK+
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKV-IDGKHLNCKLAVDGKK 247
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
++ KLF+ L+ T+E L +F YG + A V+ D TG+S+GYGFV + ++ A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF---MHVDGA 129
Query: 250 LISLN--NVELEGRAIRVSLA 268
L++L + +++GR LA
Sbjct: 130 LLALKEPSKKIDGRVTVTQLA 150
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 5/174 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ L + L L YG E V+ D+ +GKS+G+ FVT V+ ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 162 LDGKEFLGRTLRVNL--SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K+ GR L S + + K++V N+ + + ++ L+ F YG V
Sbjct: 136 PS-KKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA-EGKR 272
+ +D TG+SRG+ Y + AL V ++G+ + LA +GK+
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKV-IDGKHLNCKLAVDGKK 247
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
++ KLF+ L+ T+E L +F YG + A V+ D TG+S+GYGFV + ++ A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF---MHVDGA 129
Query: 250 LISLN--NVELEGRAIRVSLA 268
L++L + +++GR LA
Sbjct: 130 LLALKEPSKKIDGRVTVTQLA 150
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 183 KEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSK 242
+ P T K+FVG L+W ++ + + F+++G ++ A ++ D TG+S+GYGFV + +
Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF-R 66
Query: 243 RSELETALISLNNVELEGRAIRVSLA 268
S+ T ++ N ++GR ++A
Sbjct: 67 ESDSATRAVADPNPVIDGRKANCNIA 92
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W E++ + F+++G ++ A V+ D +GRS+GYGFV + + +A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 253 LNNVELEGRAIRVSLA 268
V ++GR +LA
Sbjct: 74 ATPV-IDGRRANCNLA 88
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W E++ + F+++G ++ A V+ D +GRS+GYGFV + + +A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 253 LNNVELEGRAIRVSLA 268
V ++GR +LA
Sbjct: 74 ATPV-IDGRRANCNLA 88
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLY--DRDSGKSRGFAFVTMSCVEDCNTVIE 160
L+ NL ++++ A + +E G E+++V + +RD G RGF V + E+ +E
Sbjct: 299 LFAANLSFNIERADVENFFKEAG--EVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 161 NLDGKEFLGRTLRVNLSDK--PKPKEPLY-PET-----------EHKLFVGNLSWTVTSE 206
G+ LGR +R++++ + + + P + P++ E K+FV +++ +
Sbjct: 357 -FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSED 415
Query: 207 SLIQVFQEY----GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 260
+ +E+ G + V D +TG S+G ++ + SE + + LN ++ G
Sbjct: 416 DIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF---SEGKEKALELNGSDMGG 470
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W SL F+++G +V A V+ D +GRS+GYGFV + + A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 253 LNNVELEGRAIRVSLA 268
V ++GR +LA
Sbjct: 68 PAPV-IDGRRANCNLA 82
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W SL F+++G +V A V+ D +GRS+GYGFV + + A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 253 LNNVELEGRAIRVSLA 268
V ++GR +LA
Sbjct: 68 PAPV-IDGRRANCNLA 82
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W E++ + F+++G ++ A V+ D +GRS+GYGFV + + +A
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
Query: 250 LISLNNVELEGRAIRVSLAE 269
+ V ++GR +LA
Sbjct: 71 CVDATPV-IDGRRANCNLAS 89
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P K+FVG L+ +VT + F ++G + V+YD T R RG+GF+ Y ++
Sbjct: 42 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 101
Query: 248 TALISLNNVELEGRAIRVSLA 268
L + EL G+ + V LA
Sbjct: 102 KVLQKTFH-ELNGKMVEVKLA 121
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP---------- 185
FAFV M VE+ + + +LDG F G ++V +L+ P +P
Sbjct: 288 FAFVEMRSVEEASNAM-SLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVG 346
Query: 186 LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
L P E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 347 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 406
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLA 268
Y S + A +LN +++ + + V A
Sbjct: 407 YQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=290
Length = 290
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V++E + ++F E G + + YD +GRS+G V +S+R +
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSRRGDALA 163
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ NNV+L+G+ +++ +
Sbjct: 164 AVKRYNNVQLDGKLMKIEI 182
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ S++ +L L +++G + +GK+RGF V+ + L
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHT-----AGKNRGFIMVSYYDIRAAQKAARAL 267
Query: 163 DGKEFLGRTLRVNLS-DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
G+ GR L + S K PKE +E L+V NL ++++E L +F YG +
Sbjct: 268 HGRLLRGRKLDIRYSIPKENPKE---NSSEGALWVNNLDSSISNEELHGIFSSYGEIREV 324
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
R T ++ + + + AL LN +E+ GR ++++
Sbjct: 325 R-----RTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLA 364
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP---------- 185
FAFV M VE+ + + +LDG F G ++V +L+ P +P
Sbjct: 288 FAFVEMRSVEEASNAM-SLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVG 346
Query: 186 LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
L P E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 347 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 406
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLA 268
Y S + A +LN +++ + + V A
Sbjct: 407 YQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=292
Length = 292
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V++E + ++F E G + + YD +GRS+G V +S+R +
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSRRGDALA 163
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ NNV+L+G+ +++ +
Sbjct: 164 AVKRYNNVQLDGKLMKIEI 182
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W ++SLI F++YG + + + D +G+S+GYGF+ + RS AL
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
K+FV L W ++SLI F++YG + + + D +G+S+GYGF+ + RS AL
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP---------- 185
FAFV M VE+ + + +LDG F G ++V +L+ P +P
Sbjct: 288 FAFVEMRSVEEASNAM-SLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVG 346
Query: 186 LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
L P E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 347 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 406
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLA 268
Y S + A +LN +++ + + V A
Sbjct: 407 YQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP---------- 185
FAFV M VE+ + + +LDG F G ++V +L+ P +P
Sbjct: 266 FAFVEMRSVEEASNAM-SLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVG 324
Query: 186 LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
L P E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 325 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 384
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLA 268
Y S + A +LN +++ + + V A
Sbjct: 385 YQDLSVTDIACAALNGIKMGDKTLTVRRA 413
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y + E A+ L
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRVVDGREITVQFAK 93
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y + E A+ L
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRVVDGREITVQFAK 93
>AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=245
Length = 245
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 143
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ N+V+L+G+ +++ +
Sbjct: 144 AVKKYNDVQLDGKPMKIEI 162
>AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=244
Length = 244
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 143
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ N+V+L+G+ +++ +
Sbjct: 144 AVKKYNDVQLDGKPMKIEI 162
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FV L W T E+L+ VF+ YG + V+ D TG+++G+GFV + R + A
Sbjct: 102 THRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
Query: 250 L 250
L
Sbjct: 162 L 162
>AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140629-24141504 FORWARD LENGTH=178
Length = 178
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 19 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 77
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ N+V+L+G+ +++ +
Sbjct: 78 AVKKYNDVQLDGKPMKIEI 96
>AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=242
Length = 242
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 83 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 141
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ N+V+L+G+ +++ +
Sbjct: 142 AVKKYNDVQLDGKPMKIEI 160
>AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141410 FORWARD LENGTH=211
Length = 211
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V +E + ++F E G + V +D +GRS+G V YS+R +
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALA 143
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ N+V+L+G+ +++ +
Sbjct: 144 AVKKYNDVQLDGKPMKIEI 162
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FV L W T E+L+ VF+ YG + V+ D TG+++G+GFV + R + A
Sbjct: 102 THRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
Query: 250 L 250
L
Sbjct: 162 L 162
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K++VG L W +E L F+++G ++ ++ D ETGRS GYGFV + + E+A +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTF---RDAESATRA 109
Query: 253 LNNVE--LEGRAIRVSLA 268
N + ++GR + +LA
Sbjct: 110 CQNPKPVIDGREAKCNLA 127
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
++ +FV L W T E+L F+ YG + V+ D +TGR++G+GFV + R A
Sbjct: 161 SQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
Query: 250 L 250
L
Sbjct: 221 L 221
>AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 |
chr5:14981805-14983978 REVERSE LENGTH=280
Length = 280
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E +L V NL VT+E + ++F E G V + YD + GR G V Y +RS+
Sbjct: 90 EVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYD-KNGRPSGTAEVVYPRRSDAFQ 148
Query: 249 ALISLNNVELEGRAIRVSLAEGKRS 273
AL NNV L+GR +R+ + G S
Sbjct: 149 ALKKYNNVLLDGRPMRLEILGGNNS 173
>AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 |
chr5:14981805-14983978 REVERSE LENGTH=288
Length = 288
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
+L V NL VT+E + ++F E G V + YD + GR G V Y +RS+ AL
Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYD-KNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
NNV L+GR +R+ + G S
Sbjct: 153 YNNVLLDGRPMRLEILGGNNS 173
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 188 PETEHK-----LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSK 242
PE E K LFV L+ E L +F +GTVV A V+ D +TG S Y F+ +
Sbjct: 234 PEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFEN 293
Query: 243 RSELETALISLNNVELEGRAIRVSLAE 269
+ E A ++N ++ R I V ++
Sbjct: 294 KESCEQAYFKMDNALIDDRRIHVDFSQ 320
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L+V NL +++T+ + +F +G V VL D T +SRG FV Y R + A S+
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 254 NNVELEGRAIRVSLA 268
+ L GR + VS+A
Sbjct: 119 DAKILNGRKLTVSIA 133
>AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich
splicing factor 35 | chr4:13025168-13027243 FORWARD
LENGTH=350
Length = 350
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 29/179 (16%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ GN Y L L +YG E +++ GFAFV M D I L
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA--------GFAFVYMEDERDAEDAIRAL 55
Query: 163 DGKEF--LGRTLRVNLS------DKPKPKEPLYPETEHK----LFVGNLSWTVT-SESLI 209
D EF GR LRV + DK + + LFV N T + L
Sbjct: 56 DRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLE 115
Query: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+ F+ YG +V R+ R + F+ Y + + AL + NN +L + I V A
Sbjct: 116 KHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166
>AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 29/179 (16%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ GN Y L L +YG E +++ GFAFV M D I L
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA--------GFAFVYMEDERDAEDAIRAL 55
Query: 163 DGKEF--LGRTLRVNLS------DKPKPKEPLYPETEHK----LFVGNLSWTVT-SESLI 209
D EF GR LRV + DK + + LFV N T + L
Sbjct: 56 DRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLE 115
Query: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+ F+ YG +V R+ R + F+ Y + + AL + NN +L + I V A
Sbjct: 116 KHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 186 LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSE 245
+ E+ FV L + L +F ++G V+ ++++YD +TG+SR +GFV + +
Sbjct: 1 MATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKS 60
Query: 246 LETALISLNNVELEGRAIRV 265
+ A++ ++ E + + V
Sbjct: 61 MTDAIMIMDVEESRSKCVNV 80
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
++VG L + +T E++ +VF YG+V+ +++ D + R + YGFV +S R + A+ +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 254 NNVELEGRAIRVS 266
+ + GRA+RV+
Sbjct: 68 DGKSIGGRAVRVN 80
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y G LPY + + + YGS ++++ DR S + + + FVT S + IE++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 163 DGKEFLGRTLRVN 175
DGK GR +RVN
Sbjct: 68 DGKSIGGRAVRVN 80
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 176 LSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSR 233
LS + + + P P+ E LFV LS TSE L F ++G V A+V+ D +G S+
Sbjct: 38 LSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSK 97
Query: 234 GYGFVCYSKRSELETALISLNNVELEGRAI 263
G+GFV Y+ + + ++ L+G I
Sbjct: 98 GFGFVRYATLEDSAKGIAGMDGKFLDGWVI 127
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFVG LS T ++L +V +YG + R++ TG SRGYGFV Y E+ A
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 254 NNVELEGRAI 263
++ ++GR I
Sbjct: 126 HHSLIDGREI 135
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
+LFV NL +T T E L++ F +G + ++ D ET RSRG ++ Y A+
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 253 LNNVELEGRAIRV 265
L+N +GR + +
Sbjct: 355 LDNSSFQGRLLHI 367
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ +FV W T E+L F+ YG + V+ D +TGR +GYGFV + R A
Sbjct: 406 AQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
Query: 250 L 250
L
Sbjct: 466 L 466
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEV-LYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGK 165
NL A + G G A+++ V L GK G+ FV + N +E +G
Sbjct: 164 NLSPLTKIAHIKGFFN--GVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNG- 220
Query: 166 EFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLY 225
E+L + + P LFV NL ++ +I F++ G VV R++
Sbjct: 221 EYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIV 280
Query: 226 DGETGRSRGYGFVCYSKRSELETALI 251
+ + G+ G+GFV ++ +E E AL+
Sbjct: 281 NSQ-GKHAGWGFVEFASANEAEKALV 305
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P KLF+ LS+ + ++L F+ +G +V +++ D + RS+GY F+ Y+
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 248 TALISLNNVELEGRAIRVSLAEGK 271
TAL +N + G I V +A+ K
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTK 361
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 142 RGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPK-----EPLYP-------- 188
+ FAFV M VE+ + + LDG G ++V P P P
Sbjct: 302 KKFAFVEMRSVEEASNAMA-LDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGA 360
Query: 189 -----------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGF 237
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 361 VGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
Query: 238 VCYSKRSELETALISLNNVELEGRAIRVSLA 268
Y S + A +LN +++ + + V A
Sbjct: 421 CVYQDPSVTDIACAALNGIKMGDKTLTVRRA 451
>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779760-20781241 FORWARD LENGTH=265
Length = 265
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 122 EEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLR-------- 173
EE G+ ++ ++D G S+G V + + ++E+ L R L
Sbjct: 66 EEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKEI 125
Query: 174 VNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSR 233
+N KE + ++VGN+ + T E + Q FQ GTV +L D + G+ +
Sbjct: 126 INSGVSAAEKEEV---DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPK 181
Query: 234 GYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
G+ +V + + ++ +LI LN EL GR I+VS
Sbjct: 182 GFAYVEFVEVEAVQNSLI-LNESELHGRQIKVS 213
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y G +P+ + L + +YG + ++ D+ +GKS+GFAF+ ++NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPET 190
+G LGRT++V+ K E ET
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEET 125
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G L V+ + L +G + ++ D+ + K R F FVT ED + ++N+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 163 DGKEFLGRTLRVN--LSDKPKPKEPLYPETEHKLFVGNLSW 201
DG E GR L VN L +K K E + H L+ +W
Sbjct: 75 DGAELYGRVLTVNYALPEKIKGGEQGW--AAHPLWADADTW 113