Miyakogusa Predicted Gene

Lj6g3v0084290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0084290.1 Non Chatacterized Hit- tr|E1ZCC1|E1ZCC1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,33.59,0.000000000002,VACUOLAR MEMBRANE PROTEIN PEP5, 11,NULL;
VACUOLAR MEMBRANE PROTEIN RELATED,NULL,CUFF.57490.1
         (300 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05170.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sorting...   404   e-113

>AT2G05170.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sorting 11
           | chr2:1870020-1873278 FORWARD LENGTH=932
          Length = 932

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/298 (67%), Positives = 233/298 (78%), Gaps = 20/298 (6%)

Query: 1   MYVAKKAGRHEWYLKILLEDLGRYEEALGYISGLESSQAGMTIKEYGKTLIEHMPVETIQ 60
           MYVAKKAG+HEWYLKILLEDLG Y+EAL Y+S LE SQAG+TI++YGK LIEH P ETI 
Sbjct: 478 MYVAKKAGKHEWYLKILLEDLGNYDEALQYVSSLEPSQAGVTIEQYGKILIEHKPKETID 537

Query: 61  ILIRLCTEDGDKRPHSNGLYVSMLPSPVDFLSIFVHHPQSLMEFLEKYTNKVKDSPAQVE 120
           IL+RLCTE G      NG+++SMLPSPVDF+++FV HP SLM FLE+Y   V+DSPAQ E
Sbjct: 538 ILMRLCTEQG----IPNGVFLSMLPSPVDFITVFVQHPHSLMHFLERYAEIVQDSPAQAE 593

Query: 121 INNTLLELYISNELNFPSISQVNEG------GGYLNGASSK----------SMNLRAQPN 164
           INNTLLELY+S +LNFPSIS    G         +  A SK          S +   +  
Sbjct: 594 INNTLLELYLSRDLNFPSISLSENGLDKDLIDHSVAAAVSKADPEKKTNADSKDAMEKDC 653

Query: 165 GSRREKGLCMLKSAWPPEAEHPLYDVDLAIILCEMNAFREGLMYLYEKMKLYKEVIACYM 224
             R++KGL +LK AWP + E PLYDVDLA+ILCEMN+F++GL+YLYEKMK YKEVIACYM
Sbjct: 654 TERQQKGLELLKMAWPSDLEQPLYDVDLAVILCEMNSFKDGLLYLYEKMKFYKEVIACYM 713

Query: 225 QSRDHEGLIACCKRLGDSVKGGDPSLWADLLKYFGELGEDCSKEVKEVLTYIERDDII 282
           Q+ DHEGLIACCKRLGDS KGGDPSLWADLLKYFGE+GEDC+KEVKEVLTYIERDDI+
Sbjct: 714 QNHDHEGLIACCKRLGDSSKGGDPSLWADLLKYFGEIGEDCTKEVKEVLTYIERDDIL 771