Miyakogusa Predicted Gene

Lj6g3v0060010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0060010.1 Non Chatacterized Hit- tr|D7KDF5|D7KDF5_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,38.5,1e-17,seg,NULL,CUFF.57459.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04500.1 | Symbols:  | CCT motif family protein | chr1:122175...    78   7e-15
AT2G33350.1 | Symbols:  | CCT motif family protein | chr2:141341...    65   6e-11
AT2G33350.2 | Symbols:  | CCT motif family protein | chr2:141341...    65   6e-11

>AT1G04500.1 | Symbols:  | CCT motif family protein |
           chr1:1221757-1224235 REVERSE LENGTH=386
          Length = 386

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 91/202 (45%), Gaps = 49/202 (24%)

Query: 9   DEISSPLSARIFELCNSELFPEAL-QNSEVTXXXXXXXXXXXXXATNTSLAIDVETKFXX 67
           DEI+SPL+A+IF+ C+S+LF E   Q SEVT               N             
Sbjct: 15  DEITSPLTAQIFDFCDSQLFQETFNQTSEVTSASNGCGYVENNNTNN------------- 61

Query: 68  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVIFDSQEDIDNDISASIDFTLSPAFNVGP 127
                                        LS+IFDSQ+D DNDI+ASIDF+ S  F   P
Sbjct: 62  --------FPDKSNSGSNQDHEDNNDNADLSIIFDSQDDFDNDITASIDFSSSIQF---P 110

Query: 128 FAPSQQEQHFDFSSVQQNQVQLTASSVVEGFSHSQYPPDPV-APLMGASLPP---VFEED 183
            +   QEQ FDF+ +Q +Q                 PP+ + +   G  LPP   VFEED
Sbjct: 111 ASDQLQEQ-FDFTGIQLHQ-----------------PPNTLYSSSSGDLLPPPLSVFEED 152

Query: 184 CITAVPSY--MPLIPSSPTLLY 203
           C+++VPSY    + PSSP+  +
Sbjct: 153 CLSSVPSYNLGSINPSSPSCSF 174


>AT2G33350.1 | Symbols:  | CCT motif family protein |
           chr2:14134116-14136836 FORWARD LENGTH=410
          Length = 410

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 94/205 (45%), Gaps = 42/205 (20%)

Query: 9   DEISSPLSARIFELCNSELFPEAL-QNSEVTXXXXXXXXXXXXXATNTSLAIDVETKFXX 67
           D+I+SPLSA+IF+ C+ +LF E   Q+SEVT               +TS  ++    F  
Sbjct: 17  DDITSPLSAQIFDFCDPQLFQETFNQSSEVT---------------STSNILEKSGSFHS 61

Query: 68  XXXXXXXXXXXXXXXXXX----XXXXXXXXXXXLSVIFDSQEDIDNDISASIDFTLS--- 120
                                            LS+IFDSQED +NDI+ASIDF+ S   
Sbjct: 62  NTNTTTTTENSNNNNNNKNTNLQDDEDDNNNTDLSIIFDSQEDFENDITASIDFSSSSLQ 121

Query: 121 -PAFNVGPFAPSQQEQHFDFSSVQQNQVQLTASSVVEGFSHSQYPPDPVAPLMGASLPP- 178
            P  +    A SQ +  FDFSS  Q         V+    +  Y  DP++    +SL P 
Sbjct: 122 YPVIDHLLTAISQDQ--FDFSSGLQ---------VIHQPPNISYSGDPLSLSAISSLAPP 170

Query: 179 -----VFEEDCITAVPSY-MPLIPS 197
                VFEEDC+++VPSY + L PS
Sbjct: 171 PLQSGVFEEDCLSSVPSYNLGLNPS 195


>AT2G33350.2 | Symbols:  | CCT motif family protein |
           chr2:14134116-14136836 FORWARD LENGTH=409
          Length = 409

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 94/205 (45%), Gaps = 42/205 (20%)

Query: 9   DEISSPLSARIFELCNSELFPEAL-QNSEVTXXXXXXXXXXXXXATNTSLAIDVETKFXX 67
           D+I+SPLSA+IF+ C+ +LF E   Q+SEVT               +TS  ++    F  
Sbjct: 17  DDITSPLSAQIFDFCDPQLFQETFNQSSEVT---------------STSNILEKSGSFHS 61

Query: 68  XXXXXXXXXXXXXXXXXX----XXXXXXXXXXXLSVIFDSQEDIDNDISASIDFTLS--- 120
                                            LS+IFDSQED +NDI+ASIDF+ S   
Sbjct: 62  NTNTTTTTENSNNNNNNKNTNLQDDEDDNNNTDLSIIFDSQEDFENDITASIDFSSSSLQ 121

Query: 121 -PAFNVGPFAPSQQEQHFDFSSVQQNQVQLTASSVVEGFSHSQYPPDPVAPLMGASLPP- 178
            P  +    A SQ +  FDFSS  Q         V+    +  Y  DP++    +SL P 
Sbjct: 122 YPVIDHLLTAISQDQ--FDFSSGLQ---------VIHQPPNISYSGDPLSLSAISSLAPP 170

Query: 179 -----VFEEDCITAVPSY-MPLIPS 197
                VFEEDC+++VPSY + L PS
Sbjct: 171 PLQSGVFEEDCLSSVPSYNLGLNPS 195