Miyakogusa Predicted Gene

Lj6g3v0057850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0057850.1 Non Chatacterized Hit- tr|C6T3Z3|C6T3Z3_SOYBN
Putative uncharacterized protein (Fragment) OS=Glycine,30.64,2e-18,no
description,NULL; P34-Arc,Arp2/3 complex, 34kDa subunit p34-Arc;
coiled-coil,NULL; ARP2/3 COMPLEX,CUFF.57449.1
         (363 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33385.2 | Symbols: arpc2b | actin-related protein C2B | chr2...   352   3e-97
AT2G33385.1 | Symbols: arpc2b | actin-related protein C2B | chr2...   336   1e-92
AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subu...   192   3e-49

>AT2G33385.2 | Symbols: arpc2b | actin-related protein C2B |
           chr2:14147604-14149769 REVERSE LENGTH=374
          Length = 374

 Score =  352 bits (902), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 233/314 (74%), Gaps = 2/314 (0%)

Query: 52  MACIDRASPALNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIPPL 111
           MA ++RASP L + LLK+YRAEKP+E+D H HEFGS+EYHI+   S+P + ++S S    
Sbjct: 1   MAYLERASPTLKETLLKIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLE 60

Query: 112 CQGVLT-NELSPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVKVIKEI 170
            QG +T  E+S  T E++K +   V++I +P R  +QLTL L+L+ IP+ K+ +K+I  I
Sbjct: 61  TQGAVTLKEISSYTYEVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEAIKIITRI 120

Query: 171 STVQSAILSSQMKEILRNVN-TDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRL 229
           S +Q+ ILSSQ+KE+LR++N  DD+      P+++VYHP EPF+V +QP++I AVFP+  
Sbjct: 121 SELQAIILSSQLKEMLRSLNFQDDSRSINNMPIRIVYHPSEPFYVFKQPEKITAVFPMNF 180

Query: 230 REKSDVVIATAFFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDI 289
           ++ SDVVIAT+FFQELV+VG+     KAP C+WS IPP +LRGE  +DL+TN GF SFDI
Sbjct: 181 KDNSDVVIATSFFQELVEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSFDI 240

Query: 290 SSRHVEGNRLDKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLENLVEVLHHTISEEKKQ 349
           +SRH+EG RLDKTVWNLLNF A  +YH+K ++G+IQRRMRKR+E LV++L++T  EE+  
Sbjct: 241 TSRHIEGKRLDKTVWNLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLNNTSLEEEAA 300

Query: 350 TQQHQGCRYSKKLV 363
             ++  C+Y K+ V
Sbjct: 301 QNENGRCKYVKEFV 314


>AT2G33385.1 | Symbols: arpc2b | actin-related protein C2B |
           chr2:14147604-14149769 REVERSE LENGTH=365
          Length = 365

 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 160/314 (50%), Positives = 228/314 (72%), Gaps = 11/314 (3%)

Query: 52  MACIDRASPALNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIPPL 111
           MA ++RASP L + LLK+YRAEKP+E+D H HEFGS+EYHI+   S+P + ++S S    
Sbjct: 1   MAYLERASPTLKETLLKIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLE 60

Query: 112 CQGVLT-NELSPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVKVIKEI 170
            QG +T  E+S  T E++K +   V++I +P R  +QLTL L+L+ IP+ K+ +K+I  I
Sbjct: 61  TQGAVTLKEISSYTYEVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEAIKIITRI 120

Query: 171 STVQSAILSSQMKEILRNVN-TDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRL 229
           S +Q+ ILSSQ+KE+LR++N  DD+      P+++VYHP EPF+V +QP++I AVFP+  
Sbjct: 121 SELQAIILSSQLKEMLRSLNFQDDSRSINNMPIRIVYHPSEPFYVFKQPEKITAVFPMNF 180

Query: 230 REKSDVVIATAFFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDI 289
           ++ SDVVIAT+FFQ++          KAP C+WS IPP +LRGE  +DL+TN GF SFDI
Sbjct: 181 KDNSDVVIATSFFQDM---------GKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSFDI 231

Query: 290 SSRHVEGNRLDKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLENLVEVLHHTISEEKKQ 349
           +SRH+EG RLDKTVWNLLNF A  +YH+K ++G+IQRRMRKR+E LV++L++T  EE+  
Sbjct: 232 TSRHIEGKRLDKTVWNLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLNNTSLEEEAA 291

Query: 350 TQQHQGCRYSKKLV 363
             ++  C+Y K+ V
Sbjct: 292 QNENGRCKYVKEFV 305


>AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit
           p34-Arc | chr1:10961106-10962999 FORWARD LENGTH=318
          Length = 318

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 171/297 (57%), Gaps = 4/297 (1%)

Query: 62  LNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIP-PLCQGVLTNEL 120
           L  +L +    +K +E+D+   EF  V YH+Q    NP +  LS+S+P P  + +  + L
Sbjct: 12  LQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPEAMSFDGL 71

Query: 121 SPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVKVIKEISTVQSAILSS 180
               IE +K       +I +P R+ + LTLKL+ +++   ++   ++ ++++++  ++ +
Sbjct: 72  PLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE---LLTKLASIREVVMGA 128

Query: 181 QMKEILRNVNTDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRLREKSDVVIATA 240
            +K I +++ +      + + + +++ P E FF++ Q  ++   FP+R ++  D ++AT+
Sbjct: 129 PLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAFPMRFKDSVDTILATS 188

Query: 241 FFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDISSRHVEGNRLD 300
           F +E V+   +     AP C+WS   P EL G   E LS N GF +F I  RHVEG +LD
Sbjct: 189 FLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVTFVIFPRHVEGKKLD 248

Query: 301 KTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLENLVEVLHHTISEEKKQTQQHQGCR 357
           +TVWNL  F+AYV YHVK ++GF+  RMR+R+E++++ L      EK ++  ++  +
Sbjct: 249 RTVWNLSTFHAYVSYHVKFSEGFMHTRMRRRVESMIQALDQAKPLEKTRSMNNKSFK 305