Miyakogusa Predicted Gene

Lj6g3v0057770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0057770.1 tr|B9HKT6|B9HKT6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564980 PE=4
SV=1,66.18,6e-19,seg,NULL,CUFF.57442.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33390.1 | Symbols:  | unknown protein; Has 34 Blast hits to ...    74   2e-14

>AT2G33390.1 | Symbols:  | unknown protein; Has 34 Blast hits to 34
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:14151714-14152698 FORWARD LENGTH=98
          Length = 98

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 62/106 (58%), Gaps = 11/106 (10%)

Query: 5   MDT---DSKDANNYMDNKPVMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLPPRRGGMSRN 61
           MDT   + K+AN   +NK ++  SL   +++D   +    E++S+S  LLPPR+GGMSR+
Sbjct: 1   MDTGRGEGKEANG-CENKAIV--SLNSSEIEDQIFE----EEESESQCLLPPRKGGMSRS 53

Query: 62  SDKTRLKVQWNDRNGNKLVEVLEYEPXXXXXXXXXXXXXXCICTIM 107
           +DK +  VQWND  G+ L EVL YEP              CICTIM
Sbjct: 54  TDKIKRTVQWNDIKGDNLAEVLVYEP-SEVSDTEDDDSDSCICTIM 98