Miyakogusa Predicted Gene

Lj6g3v0027680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0027680.1 tr|G7I3R9|G7I3R9_MEDTR NADH-quinone
oxidoreductase subunit F OS=Medicago truncatula GN=MTR_1g042300
,94.62,0,Nqo1 FMN-binding domain-like,NULL; Nqo1C-terminal
domain-like,NULL; Nqo1 middle domain-like,NULL; se,CUFF.57401.1
         (483 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08530.1 | Symbols: CI51 | 51 kDa subunit of complex I | chr5...   870   0.0  

>AT5G08530.1 | Symbols: CI51 | 51 kDa subunit of complex I |
           chr5:2759848-2761726 REVERSE LENGTH=486
          Length = 486

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/481 (89%), Positives = 453/481 (94%)

Query: 1   MRGILSVTKATLARHQGEKLGLGLRLFSTQGASTATTXXXXXXXXXXEKTHFGGLKDEDR 60
           +RGIL + +A     +  +L   LR FSTQ AST+TT          EKTHFGGLKDEDR
Sbjct: 4   VRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDR 63

Query: 61  IFTNLYGIHDPFLKGAMKRGDWYRTKDLVTKGTDWIVNEMKKSGLRGRGGAGFPSGLKWS 120
           IFTNLYG+HDPFLKGAMKRGDW+RTKDLV KGTDWIVNEMKKSGLRGRGGAGFPSGLKWS
Sbjct: 64  IFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWS 123

Query: 121 FMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYSYIRG 180
           FMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAY YIRG
Sbjct: 124 FMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRG 183

Query: 181 EYVNERINLEKARKEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQ 240
           EYVNER+NLEKAR+EAYAAGLLGKNACGSGYDF+VYIH+GAGAYICGEETALLESLEGKQ
Sbjct: 184 EYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQ 243

Query: 241 GKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSG 300
           GKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWF+SFGRKNN+GTKLFC+SG
Sbjct: 244 GKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISG 303

Query: 301 HVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYD 360
           HVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLA+IPGGSSVPL+PK+IC+DVLMD+D
Sbjct: 304 HVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFD 363

Query: 361 ALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLK 420
           ALKAV SGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMER+K
Sbjct: 364 ALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMK 423

Query: 421 VGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEYAQRELLQ 480
           VGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI+E A+RELLQ
Sbjct: 424 VGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERELLQ 483

Query: 481 A 481
           A
Sbjct: 484 A 484