Miyakogusa Predicted Gene
- Lj6g3v0024590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0024590.1 CUFF.57382.1
(111 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33430.1 | Symbols: DAL1, DAL | differentiation and greening-... 133 2e-32
AT2G35240.1 | Symbols: | plastid developmental protein DAG, put... 133 3e-32
AT1G32580.1 | Symbols: | plastid developmental protein DAG, put... 131 1e-31
AT1G11430.1 | Symbols: | plastid developmental protein DAG, put... 83 3e-17
AT3G06790.2 | Symbols: | plastid developmental protein DAG, put... 80 4e-16
AT4G20020.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 79 4e-16
AT4G20020.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 79 5e-16
AT3G06790.1 | Symbols: | plastid developmental protein DAG, put... 79 8e-16
AT3G15000.1 | Symbols: | cobalt ion binding | chr3:5050321-5052... 70 3e-13
AT1G72530.1 | Symbols: | plastid developmental protein DAG, put... 60 2e-10
AT5G44780.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 60 3e-10
AT1G53260.2 | Symbols: | LOCATED IN: endomembrane system; BEST ... 56 6e-09
AT1G72530.2 | Symbols: | plastid developmental protein DAG, put... 55 1e-08
AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST ... 53 4e-08
>AT2G33430.1 | Symbols: DAL1, DAL | differentiation and
greening-like 1 | chr2:14162732-14164729 FORWARD
LENGTH=219
Length = 219
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Query: 12 CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
C + + +V SEEEAKKRIY++SCE+YLGFGCEIDEETS KL+G G++FVLPDSYVDP
Sbjct: 107 CYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDP 166
Query: 72 EYKDYGGELFVNGAIVQRPPERQKRFGQKQTTRKTSR 108
E KDYG ELFVNG IVQR PERQ+R + Q R R
Sbjct: 167 ENKDYGAELFVNGEIVQRSPERQRRV-EPQPQRAQDR 202
>AT2G35240.1 | Symbols: | plastid developmental protein DAG,
putative | chr2:14845099-14846262 REVERSE LENGTH=232
Length = 232
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 77/97 (79%)
Query: 12 CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
C + + +V SEEEA+K+IY++SCE+Y GFGCEIDEETS+KL+G G++FVLPDSYVDP
Sbjct: 119 CYVQTLAKIVGSEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDP 178
Query: 72 EYKDYGGELFVNGAIVQRPPERQKRFGQKQTTRKTSR 108
E+KDYG ELFVNG +V RPPERQ+R + R + +
Sbjct: 179 EFKDYGAELFVNGEVVPRPPERQRRMVELTNQRGSDK 215
>AT1G32580.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:11784108-11785430 FORWARD LENGTH=229
Length = 229
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 76/97 (78%)
Query: 12 CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
C + + ++ SEEEAKK+IY++SCE+Y GFGCEIDEETS+KL+G G++F+LPDSYVD
Sbjct: 116 CYVQTLAKIIGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQ 175
Query: 72 EYKDYGGELFVNGAIVQRPPERQKRFGQKQTTRKTSR 108
E KDYG ELFVNG IVQRPPERQ++ + T R +
Sbjct: 176 ENKDYGAELFVNGEIVQRPPERQRKIIELTTQRTNDK 212
>AT1G11430.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:3847273-3848938 FORWARD LENGTH=232
Length = 232
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 53/74 (71%)
Query: 14 LSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEY 73
L+ + ++ S EEAKK +Y+ S Y GF C IDEETS+K G G+++VLPDSY+D +
Sbjct: 112 LNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKN 171
Query: 74 KDYGGELFVNGAIV 87
KDYGG+ ++NG I+
Sbjct: 172 KDYGGDKYINGEII 185
>AT3G06790.2 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144564-2145743 REVERSE LENGTH=244
Length = 244
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 24 EEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFVN 83
EEEAKK+IYS+ Y GFG I EE S K+ G+++VLPDSY+D KDYGG+L+V
Sbjct: 128 EEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVE 187
Query: 84 GAIVQRPPERQKRFGQK 100
G ++ RP Q RF ++
Sbjct: 188 GKVIPRP---QYRFTEQ 201
>AT4G20020.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G44780.1); Has 28928 Blast hits to 16023
proteins in 1033 species: Archae - 4; Bacteria - 4155;
Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses -
205; Other Eukaryotes - 3072 (source: NCBI BLink). |
chr4:10844433-10846085 REVERSE LENGTH=419
Length = 419
Score = 79.3 bits (194), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 20 LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
L S EEAK+R+Y+ S Y GF + E+ S+K G++F+LPDSY+DP+ K+YGG+
Sbjct: 120 LGISVEEAKQRMYACSTTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGD 179
Query: 80 LFVNGAIVQRPPERQ 94
+ NG I RPP Q
Sbjct: 180 KYENGVITHRPPPIQ 194
>AT4G20020.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G44780.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr4:10844360-10846085 REVERSE LENGTH=406
Length = 406
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 20 LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
L S EEAK+R+Y+ S Y GF + E+ S+K G++F+LPDSY+DP+ K+YGG+
Sbjct: 120 LGISVEEAKQRMYACSTTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGD 179
Query: 80 LFVNGAIVQRPPERQ 94
+ NG I RPP Q
Sbjct: 180 KYENGVITHRPPPIQ 194
>AT3G06790.1 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144564-2145743 REVERSE LENGTH=244
Length = 244
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 24 EEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFVN 83
+EEAKK+IYS+ Y GFG I EE S K+ G+++VLPDSY+D KDYGG+L+V
Sbjct: 128 QEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVE 187
Query: 84 GAIVQRPPERQKRFGQK 100
G ++ RP Q RF ++
Sbjct: 188 GKVIPRP---QYRFTEQ 201
>AT3G15000.1 | Symbols: | cobalt ion binding | chr3:5050321-5052121
FORWARD LENGTH=395
Length = 395
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 20 LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
+V SE+EA+ +IYS+S Y FG + E+ S KL + + +VLPDSY+D KDYGGE
Sbjct: 127 IVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGE 186
Query: 80 LFVNGAIVQRPPERQKRF 97
F++G V P+ + +
Sbjct: 187 PFIDGKAVPYDPKYHEEW 204
>AT1G72530.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:27312999-27313937 FORWARD LENGTH=188
Length = 188
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 23 SEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFV 82
SEEEAK+ IYS+S + Y FGC I E + K+ + +VLPDS++ YGGE FV
Sbjct: 87 SEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGGEPFV 146
Query: 83 NGAIV 87
+G +V
Sbjct: 147 DGEVV 151
>AT5G44780.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G20020.2); Has 9661 Blast hits to 6233 proteins
in 635 species: Archae - 4; Bacteria - 1116; Metazoa -
4251; Fungi - 1510; Plants - 1359; Viruses - 43; Other
Eukaryotes - 1378 (source: NCBI BLink). |
chr5:18068100-18070544 FORWARD LENGTH=723
Length = 723
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 20 LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
L S EEAKK+IY+I Y GF + +K G+ +++PDSY+D E K YGG+
Sbjct: 114 LAISLEEAKKKIYAICTTSYQGFQATMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGGD 173
Query: 80 LFVNGAIVQRP 90
+ NG I P
Sbjct: 174 KYENGVITPGP 184
>AT1G53260.2 | Symbols: | LOCATED IN: endomembrane system; BEST
Arabidopsis thaliana protein match is: cobalt ion
binding (TAIR:AT3G15000.1); Has 246 Blast hits to 241
proteins in 32 species: Archae - 0; Bacteria - 2;
Metazoa - 7; Fungi - 16; Plants - 212; Viruses - 1;
Other Eukaryotes - 8 (source: NCBI BLink). |
chr1:19859406-19860421 REVERSE LENGTH=230
Length = 230
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 30 RIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFVNGAIVQR 89
+IYS+S + Y FG + E+ S K+ + +VLPDSY+D + KDYGGE F++G V
Sbjct: 2 KIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPY 61
Query: 90 PPERQKRF 97
P+ + +
Sbjct: 62 DPKYHEEW 69
>AT1G72530.2 | Symbols: | plastid developmental protein DAG,
putative | chr1:27312999-27313937 FORWARD LENGTH=192
Length = 192
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 23 SEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYG----G 78
SEEEAK+ IYS+S + Y FGC I E + K+ + +VLPDS++ YG G
Sbjct: 87 SEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGVFFAG 146
Query: 79 ELFVNGAIV 87
E FV+G +V
Sbjct: 147 EPFVDGEVV 155
>AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST
Arabidopsis thaliana protein match is: cobalt ion
binding (TAIR:AT3G15000.1); Has 32763 Blast hits to
18534 proteins in 929 species: Archae - 22; Bacteria -
2420; Metazoa - 15140; Fungi - 5401; Plants - 5313;
Viruses - 485; Other Eukaryotes - 3982 (source: NCBI
BLink). | chr1:19859393-19860421 REVERSE LENGTH=271
Length = 271
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 30 RIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFVNGAIV 87
+IYS+S + Y FG + E+ S K+ + +VLPDSY+D + KDYGGE F++G V
Sbjct: 2 KIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAV 59