Miyakogusa Predicted Gene

Lj6g3v0003450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0003450.1 Non Chatacterized Hit- tr|I3T5Q5|I3T5Q5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.74,0,Ribosomal_L14e,Ribosomal protein L14; no
description,Translation protein SH3-like, subgroup;
SUBFAMI,CUFF.57373.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20450.1 | Symbols:  | Ribosomal protein L14 | chr2:8813923-8...   220   2e-58
AT4G27090.1 | Symbols:  | Ribosomal protein L14 | chr4:13594104-...   213   2e-56

>AT2G20450.1 | Symbols:  | Ribosomal protein L14 |
           chr2:8813923-8815071 FORWARD LENGTH=134
          Length = 134

 Score =  220 bits (560), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 120/133 (90%)

Query: 1   MPFKRFVEIGRVALVNYGKEYGRLVVIVDIIDQNRALVDAPDMVRSQMNLKRLSLTDIKV 60
           M FKRFVEIGRVALVNYG++YG+LVVIVD++DQNRALVDAPDM R QMNLKRLSLTDI +
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPKKKDLIQAMEAADVKNKWENSSWGRKLIVKKRRAALNDFDRFKIMLTKIKRATA 120
           DI RVPKKK LI+AME ADVKNKWE SSWGRKLIV+KRRAALNDFDRFKIML KIKRA  
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKKSAA 133
           VRQELAKLK+  A
Sbjct: 121 VRQELAKLKREIA 133


>AT4G27090.1 | Symbols:  | Ribosomal protein L14 |
           chr4:13594104-13595187 REVERSE LENGTH=134
          Length = 134

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 117/131 (89%)

Query: 1   MPFKRFVEIGRVALVNYGKEYGRLVVIVDIIDQNRALVDAPDMVRSQMNLKRLSLTDIKV 60
           M FKR+VEIGRVALVNYG+++G+LVVIVD++DQNRALVDAPDM R QMN KRLSLTDI +
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPKKKDLIQAMEAADVKNKWENSSWGRKLIVKKRRAALNDFDRFKIMLTKIKRATA 120
           DI RVPKKK LI+AME ADVKNKWE SSWGRKLIV+KRRA LNDFDRFKIML KIK+A  
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKKS 131
           VRQELAKLKK 
Sbjct: 121 VRQELAKLKKE 131