Miyakogusa Predicted Gene

Lj6g3v0003340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0003340.1 Non Chatacterized Hit- tr|A9NW78|A9NW78_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,36.31,8e-19,seg,NULL,CUFF.57355.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14746.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: EGF-like (...   190   8e-49

>AT4G14746.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: EGF-like
           (InterPro:IPR006210); Has 259 Blast hits to 234 proteins
           in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184;
           Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes -
           6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE
           LENGTH=212
          Length = 212

 Score =  190 bits (482), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 135/191 (70%), Gaps = 8/191 (4%)

Query: 22  SAKSDFLSPLLAPIFDDVCKKVECGKGSCKASQNSTFFFECECEPGWKQAPSSNDTLGLK 81
           +A SDFLSPL AP++D++CK+VECGKG CKA  N+TF +ECECE GWKQ         LK
Sbjct: 21  TATSDFLSPLFAPVYDNICKEVECGKGKCKAPSNTTFMYECECEDGWKQFDQH-----LK 75

Query: 82  FLPCIVPNCTLNYSCSKAPAPAQEKARKVDE--SVFDACHWVDCGGGSCNKTSMLSYSCE 139
           FLPCI PNCT + +C +A +PAQ K    D   S FD C W+DCGGG CN +    YSC 
Sbjct: 76  FLPCITPNCTFDLTCGEAASPAQPKPPPKDNITSFFDPCQWMDCGGGLCNSSMPFQYSCN 135

Query: 140 CDAGYYNLLNVTSFPCYRECALGMGCSDLGLSMSNSSTSEPPALNDNSKNGASSALQGSS 199
           C  GY NL+N+T+FPC ++CALGM C +LG+ +SNSS+S PPAL D+SKN   + L+GSS
Sbjct: 136 CREGYSNLMNITTFPCLKQCALGMDCLNLGIPLSNSSSSSPPALPDSSKNQGLN-LRGSS 194

Query: 200 LWLVMLIMFMA 210
           LW + L + +A
Sbjct: 195 LWWITLCVSLA 205