Miyakogusa Predicted Gene

Lj5g3v2300340.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2300340.2 Non Chatacterized Hit- tr|C0P2S7|C0P2S7_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,48.72,7e-17,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Nse4; Nse4,Nse4,CUFF.57318.2
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51130.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair c...   186   1e-47
AT3G20760.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair c...   162   2e-40

>AT1G51130.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair
           complex | chr1:18939480-18941560 REVERSE LENGTH=403
          Length = 403

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 133/208 (63%), Gaps = 15/208 (7%)

Query: 31  SCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALL 90
           S RR++RS++L L+  IN+ +DDL+  DSDKF  I++    LH+QV+KPREQ+ADAEALL
Sbjct: 57  SDRRILRSKYLSLQNEINDCKDDLMKIDSDKFSRIINAVENLHQQVRKPREQIADAEALL 116

Query: 91  DFTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQPSFN------------WQKLGLAVSPF 138
           D   TL+ SVKS    G++P+ FV++L+  + Q S              W+ LG AV   
Sbjct: 117 DIANTLMSSVKSQSAHGVSPAEFVNALISGFGQGSLGIDTDETAQVSLKWKDLGFAVCST 176

Query: 139 FPTVVNGSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMA 198
              V  G STMLGPM+ +LKQRK     KR   P    RP ++D++   +EKTDTDKNM 
Sbjct: 177 V-LVSCGCSTMLGPMDTELKQRKRAPNRKRTK-PGEGVRPDEVDDSQ-SEEKTDTDKNMT 233

Query: 199 TMFNVLRKMKLVPLENLILNRTSFAQTV 226
            MFN+L K K V LENL+LNR SFAQTV
Sbjct: 234 IMFNILGKKKRVQLENLVLNRRSFAQTV 261


>AT3G20760.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair
           complex | chr3:7257187-7258891 REVERSE LENGTH=383
          Length = 383

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 126/207 (60%), Gaps = 15/207 (7%)

Query: 33  RRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALLDF 92
           RR IRSQ+L L   I + +DDL   DS+KF +I+++   LH++V+KPREQ+ADAEALLD 
Sbjct: 62  RRAIRSQYLALTHKIKDAKDDLTKIDSNKFNSIINEVENLHQKVRKPREQIADAEALLDL 121

Query: 93  TR-TLVGSVKSLVNEGITPSHFVSSLLKYYH------------QPSFNWQKLGLAVSPFF 139
           T   +        + G++P+ FV++L+  +             Q S  W+ LG  V    
Sbjct: 122 TNSVVSSVKSQSAHGGVSPAEFVNALINGFGKTSLRIDADENTQVSMKWKDLGFTVCSTV 181

Query: 140 PTVVNGSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMAT 199
             V  G +TM+GPM +++KQRK     ++   P    +P+++D+ T  ++K+DTD NMA 
Sbjct: 182 -LVSCGCTTMMGPMYSEMKQRKSRVGNRKRTKPGAGVKPEEVDD-TEAEKKSDTDNNMAV 239

Query: 200 MFNVLRKMKLVPLENLILNRTSFAQTV 226
           MFN+LRK K V +ENL+LNR SFAQT 
Sbjct: 240 MFNILRKNKRVKIENLVLNRKSFAQTA 266