Miyakogusa Predicted Gene

Lj5g3v2300300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2300300.1 Non Chatacterized Hit- tr|H9MCK1|H9MCK1_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,71.21,2e-17,zinc finger,Zinc finger, CCCH-type; K homology
RNA-binding domain,K Homology domain; Eukaryotic type,CUFF.57316.1
         (299 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06770.1 | Symbols:  | KH domain-containing protein / zinc fi...   171   8e-43
AT3G12130.1 | Symbols:  | KH domain-containing protein / zinc fi...   161   6e-40

>AT5G06770.1 | Symbols:  | KH domain-containing protein / zinc
           finger (CCCH type) family protein | chr5:2090937-2092787
           REVERSE LENGTH=240
          Length = 240

 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 120/205 (58%), Gaps = 10/205 (4%)

Query: 102 KTRMCNKYNSSEGCKFGDRCHFAH-------GEWELGRPTLPPYEDPRGFGQMQSNXXXX 154
           K++ C K+ S+ GC FGD CHF H          ++     P  +  R    MQ +    
Sbjct: 38  KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSR---NMQGSGGPG 94

Query: 155 XXXXXXXXXXXXXXXXXXXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDS 214
                                 KIS++ASLAGAIIGK G++SKQICR TGAKLSI++H+ 
Sbjct: 95  GRFSGRGDPGSGPVSIFGASTSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHER 154

Query: 215 DPNLKNIELEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENF 274
           DPNLK IELEG+F+QIN AS MV ELI  + SV  P           PGSN KTK+C+ +
Sbjct: 155 DPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKICDRY 214

Query: 275 AKGSCTFGERCHFAHGTDELRRPGM 299
           +KG+CT+G+RCHFAHG  ELRR G+
Sbjct: 215 SKGNCTYGDRCHFAHGESELRRSGI 239



 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 1  MD-RKRGRPEGA--FNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFL 57
          MD RKRGRPE A   N NGG K+SK EMES +TGLGSKSKPCTKFFSTSGCPFGD CHFL
Sbjct: 1  MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60

Query: 58 HYVPGGFKAISQMINVGSSPTIPQMGRN 85
          HYVPGG+ A +QM N+   P + Q+ RN
Sbjct: 61 HYVPGGYNAAAQMTNL--RPPVSQVSRN 86


>AT3G12130.1 | Symbols:  | KH domain-containing protein / zinc
           finger (CCCH type) family protein | chr3:3864486-3866406
           REVERSE LENGTH=248
          Length = 248

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 121/210 (57%), Gaps = 12/210 (5%)

Query: 102 KTRMCNKYNSSEGCKFGDRCHFAH----GEWELGRPTLPPYEDPRGFGQMQSNXXXXXXX 157
           K++ C K+ S+ GC FG+ CHF H    G   + + T      P+    MQ +       
Sbjct: 38  KSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRFS 97

Query: 158 XXXXXXXXXXXXXXXXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPN 217
                              + S++ASLAGAIIGK GV+SKQICR TG KLSI++H+ DPN
Sbjct: 98  GRGESGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPN 157

Query: 218 LKNIELEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSA--------PGSNLKTK 269
           LKNI LEG+ +QI++ASAMV +LI  ++S +  P                  PGSN KTK
Sbjct: 158 LKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTK 217

Query: 270 LCENFAKGSCTFGERCHFAHGTDELRRPGM 299
           +CE F+KG+CTFG+RCHFAHG  ELR+ G+
Sbjct: 218 ICERFSKGNCTFGDRCHFAHGEAELRKSGI 247



 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 75/88 (85%), Gaps = 5/88 (5%)

Query: 1  MD-RKRGRPE-GAFNGNGGA-KKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFL 57
          MD RKRGRPE G+FN NGG  KKSK EMES++TGLGSKSKPCTKFFSTSGCPFG+ CHFL
Sbjct: 1  MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60

Query: 58 HYVPGGFKAISQMINVGSSPTIPQMGRN 85
          HYVPGG+ A+SQM N+G  P IPQ+ RN
Sbjct: 61 HYVPGGYNAVSQMTNMG--PPIPQVSRN 86