Miyakogusa Predicted Gene
- Lj5g3v2298200.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2298200.1 Non Chatacterized Hit- tr|A5AQQ0|A5AQQ0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,37.13,2e-18,SUBFAMILY NOT NAMED,NULL; GEMIN2,Survival motor neuron
interacting protein 1; SIP1,NULL; coiled-coil,CUFF.57312.1
(510 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:202... 229 4e-60
AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 121 1e-27
AT2G42510.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 102 8e-22
>AT1G54380.1 | Symbols: | spliceosome protein-related |
chr1:20298287-20300899 REVERSE LENGTH=515
Length = 515
Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/434 (34%), Positives = 215/434 (49%), Gaps = 70/434 (16%)
Query: 81 IEVIDETALLETI--PRKITTAASKNARRRAXXXXXXXXXXXXQIRHHKKTVTAEEIPVL 138
IE++D TAL++ + P++ TA ++ R + K E V
Sbjct: 142 IELVDHTALVDVVHHPKRPGTAQNEKDTPRKLK------------KIGDKRNVIEGSGVE 189
Query: 139 RNSEAKGGKYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTLAVNVHHLPCLPN 198
N + Y+RK + ++RF ++ Q+ W +Y+ + V EY++L ++ N
Sbjct: 190 NNGKQFRRLYTRKQLESMRFAHIVNQKNLWSEMYSRILPEVVTEYESLVYVKNYKSSKSN 249
Query: 199 KKPILGAESCENVSPVDPSCSHMDEDGHSVLXXXXXXXXXXXXYTSIQRPAFYVDGEPNF 258
+ + G N + D + ++ SI RPAF VDGEP+F
Sbjct: 250 R--VRGRTESGNEENLGTEEGTEDPEDYTDDNDDY---------NSILRPAFEVDGEPDF 298
Query: 259 ESGPPEDGWEYLRRVRWEAGQIPKVKVAKLDRCK-LNKEQSAYMPKIPDVAKCPEHLLPS 317
+GPPEDG EYLRRVRWEA IP V+VAK+D + KEQS YMP IP++ KCPE+LLP
Sbjct: 299 STGPPEDGLEYLRRVRWEAKGIPNVRVAKIDESTYIKKEQSVYMPLIPEIPKCPEYLLPM 358
Query: 318 KQWEDVFLAEFSSLRANLSCLEGSSVMDSSSLQPVHSSQLVGNNCGESASV-MNRDVLHS 376
K+WED L +F LR L+ S +++ + C E V M LH
Sbjct: 359 KEWEDSLLLDFVHLRQTLTQSANSC-----------EDEIISSQCVEDLLVEMFNKHLH- 406
Query: 377 IDKAMDQLTINLTGEVKDTTQPLKTGSKTSIDQTTPPLLSVVLGMDSVARVSMLLKRISL 436
T D++ +++ + GMDSV RVS L KRI L
Sbjct: 407 ----------------------------TEEDESFGEVVTDIQGMDSVTRVSKLKKRICL 438
Query: 437 LESANTITRNDCMWLFALCATVDAPLHADTSAALRSLLRKCASIRAG---KAGLDEEAVM 493
+E + + +DC W+ ALCA+++ PL ADT A LR LLRKCAS+RA + G +E M
Sbjct: 439 VEKESGLQSSDCKWVVALCASLETPLDADTCACLRGLLRKCASVRAETSLEVGDEEVITM 498
Query: 494 LNILATISGRYFGQ 507
N+L TI+GRYFGQ
Sbjct: 499 ANMLITIAGRYFGQ 512
>AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: spliceosome assembly, nuclear mRNA
splicing, via spliceosome; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein
match is: spliceosome protein-related
(TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins
in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62;
Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes -
123 (source: NCBI BLink). | chr2:17701686-17704618
FORWARD LENGTH=653
Length = 653
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 114/245 (46%), Gaps = 52/245 (21%)
Query: 79 LGIEVIDETALLETIP----------RKITTAASKNARRRAXXXXXXXXXXXXQIRHHKK 128
+ I+++D+TAL + +P R +T K+A R+ +
Sbjct: 299 VNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVE 358
Query: 129 TVTAEEIPVLRNSEAKGGK-----YSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEY 183
+ ++ RNS GK YSR M ++R+ ++A Q++ W +YA L + EY
Sbjct: 359 RNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRYAHIANQKKLWSDLYARLLPELVTEY 418
Query: 184 DTLAVNVHHLPCLPNKKP--ILGAESCENVSPVDPSCSHMDEDGHSVLXXXXXXXXXXXX 241
+ + +P + ++ E E+
Sbjct: 419 E------GPISAVPRRTQDYVVKEEKTED----------------------------NDD 444
Query: 242 YTSIQRPAFYVDGEPNFESGPPEDGWEYLRRVRWEAGQIPKVKVAKLDRCKL-NKEQSAY 300
Y SI RPAF VDGEP+F+SGPPEDG EYLRRVRWEA +IP VKVAK+ K KEQS Y
Sbjct: 445 YNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVY 504
Query: 301 MPKIP 305
MP+IP
Sbjct: 505 MPQIP 509
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 6/62 (9%)
Query: 426 RVSMLLKRISLLESANTITRNDCMWLFALCATVDAPLHADTSAALRSLLRKCASIRAGKA 485
+ M ++ S LES+ DC W+ ALCA+VD P ADTSA LR+L+RKCAS+RA +
Sbjct: 564 KADMFGEKESGLESS------DCKWVVALCASVDTPPDADTSACLRALVRKCASLRALEV 617
Query: 486 GL 487
G+
Sbjct: 618 GV 619
>AT2G42510.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: spliceosome assembly, nuclear mRNA
splicing, via spliceosome; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein
match is: spliceosome protein-related
(TAIR:AT1G54380.1); Has 358 Blast hits to 335 proteins
in 89 species: Archae - 4; Bacteria - 46; Metazoa - 66;
Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes -
171 (source: NCBI BLink). | chr2:17701686-17704255
FORWARD LENGTH=532
Length = 532
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 242 YTSIQRPAFYVDGEPNFESGPPEDGWEYLRRVRWEAGQIPKVKVAKLDRCKL-NKEQSAY 300
Y SI RPAF VDGEP+F+SGPPEDG EYLRRVRWEA +IP VKVAK+ K KEQS Y
Sbjct: 427 YNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVY 486
Query: 301 MPKIP 305
MP+IP
Sbjct: 487 MPQIP 491