Miyakogusa Predicted Gene

Lj5g3v2298190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2298190.1 tr|C1EDN1|C1EDN1_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_102962,29.97,6e-16,seg,NULL,CUFF.57327.1
         (430 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43235.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   313   1e-85

>AT2G43235.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 41 Blast hits to 41 proteins in 16
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 40; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr2:17968910-17970822 REVERSE
           LENGTH=437
          Length = 437

 Score =  313 bits (803), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/345 (48%), Positives = 228/345 (66%), Gaps = 23/345 (6%)

Query: 90  KDAYRDLQTLFTLDDNRRLVVSCRPSTLHFVGTSAALTFLVLSVFRVLVQLVSGF-GSWR 148
           KDA+ DLQTL +LDDNRR+VVSC+ ST+ FVG    L F+     RVLV+L S   G+++
Sbjct: 101 KDAFSDLQTLISLDDNRRVVVSCKKSTMQFVGGVVILGFVFGFAIRVLVKLGSALKGNFQ 160

Query: 149 RNASTYKPVVRRDRSLGGKEVVIAWGESQSQSTPASRVQRTAIAKNK------------V 196
            N    K VVRRDRSLGGKEVV++    +S    +SR  ++ IA ++            +
Sbjct: 161 SNP---KFVVRRDRSLGGKEVVVSVDNIRS----SSRDSKSFIASDQASRSNSTPRNLHL 213

Query: 197 RVEKKLPKWWPSVINNAAVVFDVNERDEYKREAYRVVRAIVDNRMGGRDISEDDIIRLRQ 256
           + +  LPKWWP+ + + +  FDV ++++Y+REA R+VRAIVDNR  G+DI++DDII+LR+
Sbjct: 214 KAQNNLPKWWPTSLTSQS--FDVVDKEDYQREANRIVRAIVDNRTSGKDITDDDIIQLRR 271

Query: 257 LCRFSGVQVSVEPTNIRDSLYRASVNYVLDACSSAPTTSTSIDINGEDAQQFLAGFAENI 316
           +CR SGVQV+ EP N  DS YR S+++VL+ACS AP  S+S++I  EDA++F+AG AENI
Sbjct: 272 VCRISGVQVTFEPKNTGDSFYRTSIDFVLNACSRAPWESSSVEICSEDAREFIAGLAENI 331

Query: 317 GLENXXXXXXXXXXXXXSTRSRLLQAWALEMQGKHVDATVELSKICLLLRIFXXXXXXXX 376
           GL                TRS  LQAWALE+QGKH ++  ELSKICL+ RIF        
Sbjct: 332 GLAKIDAARMVSAAVAARTRSWFLQAWALEIQGKHSESVAELSKICLIHRIFPPNEYSAE 391

Query: 377 XXXVSRGLQKHLKLEQRKHLMFLF-GKVCGEDSHRIAREALGLMH 420
              V+RGL+K +KLE+R+ L+  F G  C EDS R A EALGL+H
Sbjct: 392 MEMVARGLEKLMKLEERQSLLKTFVGMCCSEDSQRSAAEALGLVH 436