Miyakogusa Predicted Gene

Lj5g3v2292540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2292540.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,62.32,6e-17,HIGHMOBLTY12,NULL; HMG-box,High mobility group,
superfamily; HMG_box,High mobility group, superfamil,CUFF.57220.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein ...    86   6e-18
AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein ...    47   3e-06
AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein ...    45   8e-06

>AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:1376106-1378264 REVERSE LENGTH=448
          Length = 448

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 47/60 (78%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKMDLVISDAVPLRQRFPE 60
           +SR IG+LWNKL E EK +YQ KAM+DKERY  EMEDY EK K   +IS+AVPL+QR PE
Sbjct: 292 ISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQLISNAVPLQQRLPE 351


>AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr3:4335721-4337804 REVERSE LENGTH=319
          Length = 319

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 28/38 (73%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDY 38
           +++ IG +W+ L ESEK VYQ+K +KD ERY  EM +Y
Sbjct: 267 ITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEY 304


>AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:28555287-28557465 REVERSE LENGTH=338
          Length = 338

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKM 44
            ++ IG+ W+ L   E+ VYQ+  +KDKERY  E+ +Y E L++
Sbjct: 284 FTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRETLRL 327