Miyakogusa Predicted Gene
- Lj5g3v2290080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2290080.1 Non Chatacterized Hit- tr|I1PAU1|I1PAU1_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,23.78,0.000000002,seg,NULL,CUFF.60767.1
(401 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55060.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 152 3e-37
AT2G39300.2 | Symbols: | unknown protein; INVOLVED IN: biologic... 87 2e-17
AT2G39300.1 | Symbols: | unknown protein; INVOLVED IN: biologic... 87 2e-17
>AT3G55060.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G39300.2); Has 61765 Blast hits to 33720
proteins in 2065 species: Archae - 846; Bacteria - 6964;
Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses -
205; Other Eukaryotes - 13432 (source: NCBI BLink). |
chr3:20403189-20406222 REVERSE LENGTH=896
Length = 896
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 171/332 (51%), Gaps = 32/332 (9%)
Query: 79 QFNDPTRSPTSSNIATDPYHQFEHSSRCQALNFEKQRQDKPPQLAASSIQNSNRYERPGX 138
+F + +++ +++ + HSSRC F +RQ + Q A Q+ +
Sbjct: 70 KFGETSKNELTTSATKSKDRRRNHSSRC----FTPERQVRERQCKADKFQHDSSGSSSSC 125
Query: 139 XXXXXXXXXXXXXXXXXXMIVDRYIVGEQQPEENRPRSNSQRNNTRHGNHGMKLPPKIQH 198
++DRYI GE+ E + +SNS + + +LPP++Q
Sbjct: 126 SSNVSSK------------VLDRYIDGEEHLEPCKQKSNSSHSGVSESINRRRLPPRVQW 173
Query: 199 TAPSSPTNGVKDKPRTHSFREAKGSRLRSSSRDWTENG--HESPRTLAKSVIQKLSLSCD 256
T P+SP++ +K ++ SFREAKG+ LR SS D +NG H SPR++A++VI++LS +
Sbjct: 174 TVPTSPSDTFDEKRKSQSFREAKGTHLRYSSADCVDNGLRHGSPRSVARNVIERLSQTHG 233
Query: 257 LSQTSSKNFEVDNPVTIEDIYARSVNGRYDSDLDDALPKSSLLDEPYRMTNGFHGMDSNG 316
S+ S N E P+TI+D+Y S+N +DS D A S L E Y N ++ D G
Sbjct: 234 KSKGS--NHE---PITIQDVYGGSLNRTFDSSSDIAANVS--LAEHYEPVNEYYTQDYGG 286
Query: 317 DGFSCDEP-------EEDADAELMRRSKEAEERVILLSKILEQENFFPDGGCDVSTLIQT 369
+C E+D D+EL + KEAE+R L S LEQ+ D DVS+L+
Sbjct: 287 HQQNCIRSRNVYKCMEDDLDSELEMKIKEAEKRAKLFSAELEQQRCLSDCDFDVSSLVGA 346
Query: 370 VRNLAEERISLALEVSTNLRYHIADRRSAKEE 401
+R L +ER+ LA E LR I +R SA+EE
Sbjct: 347 IRKLEDERLHLAFENVNLLRSQIVERASAREE 378
>AT2G39300.2 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G55060.1). | chr2:16410109-16412869 REVERSE
LENGTH=837
Length = 837
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 40/253 (15%)
Query: 158 IVDRYIVGEQQPEENRPRSNSQRNNTRHGNHGMKLPPKIQHTAPSSPTNGVKDKPRTHSF 217
++DRYI GE+ E ++ +S S +++ G+ PP+ Q +P S + KDK ++
Sbjct: 105 VLDRYIDGEEHLERSKQKSGSLHSSSLSGSRRRL-PPRAQSPSPLSESG--KDKRKSKGL 161
Query: 218 REAKGSRLRSSSRDWTENGHESPRTLAKSVIQKLSLSCDLSQTSSKNFEVDNPVTIEDIY 277
R+A S R+LA+SVI++LS + +Q SK + P+ I+D+
Sbjct: 162 RDA------------------SARSLARSVIERLSHN---TQGKSKALSYE-PIRIQDVC 199
Query: 278 ARSVNGRYDSDLDDALPKSSLLDEPYRMTNGFHGMDSNGDGFS---------CDEPEEDA 328
+ ++ D + +P L E Y N ++ D + C E+D
Sbjct: 200 GKILDSNSDVLANVVVP----LTEEYEPVNEYYPDDQTELQYQQFFLHGKDMC--KEDDV 253
Query: 329 DAELMRRSKEAEERVILLSKILEQENFFPDGGCDVSTLIQTVRNLAEERISLALEVSTNL 388
+EL +R KEAE+RV LLS+ +E++ F D D+S+L+ +R + EER+ LA EV + L
Sbjct: 254 SSELEKRYKEAEKRVKLLSEEMEEKKFLSDCDFDISSLVGDIRQMEEERVGLAFEVLSLL 313
Query: 389 RYHIADRRSAKEE 401
R + +R S +E+
Sbjct: 314 RSQMDERASTRED 326
>AT2G39300.1 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole;
EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G55060.1); Has 46416 Blast hits to
28308 proteins in 1743 species: Archae - 734; Bacteria -
4822; Metazoa - 24446; Fungi - 3539; Plants - 2267;
Viruses - 163; Other Eukaryotes - 10445 (source: NCBI
BLink). | chr2:16410109-16412869 REVERSE LENGTH=837
Length = 837
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 40/253 (15%)
Query: 158 IVDRYIVGEQQPEENRPRSNSQRNNTRHGNHGMKLPPKIQHTAPSSPTNGVKDKPRTHSF 217
++DRYI GE+ E ++ +S S +++ G+ PP+ Q +P S + KDK ++
Sbjct: 105 VLDRYIDGEEHLERSKQKSGSLHSSSLSGSRRRL-PPRAQSPSPLSESG--KDKRKSKGL 161
Query: 218 REAKGSRLRSSSRDWTENGHESPRTLAKSVIQKLSLSCDLSQTSSKNFEVDNPVTIEDIY 277
R+A S R+LA+SVI++LS + +Q SK + P+ I+D+
Sbjct: 162 RDA------------------SARSLARSVIERLSHN---TQGKSKALSYE-PIRIQDVC 199
Query: 278 ARSVNGRYDSDLDDALPKSSLLDEPYRMTNGFHGMDSNGDGFS---------CDEPEEDA 328
+ ++ D + +P L E Y N ++ D + C E+D
Sbjct: 200 GKILDSNSDVLANVVVP----LTEEYEPVNEYYPDDQTELQYQQFFLHGKDMC--KEDDV 253
Query: 329 DAELMRRSKEAEERVILLSKILEQENFFPDGGCDVSTLIQTVRNLAEERISLALEVSTNL 388
+EL +R KEAE+RV LLS+ +E++ F D D+S+L+ +R + EER+ LA EV + L
Sbjct: 254 SSELEKRYKEAEKRVKLLSEEMEEKKFLSDCDFDISSLVGDIRQMEEERVGLAFEVLSLL 313
Query: 389 RYHIADRRSAKEE 401
R + +R S +E+
Sbjct: 314 RSQMDERASTRED 326