Miyakogusa Predicted Gene

Lj5g3v2290070.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2290070.3 Non Chatacterized Hit- tr|I1LFF7|I1LFF7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.11683
PE,86.96,0,Clp1,Pre-mRNA cleavage complex II Clp1;
CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P,NULL,CUFF.60765.3
         (439 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04680.2 | Symbols: CLPS3 | CLP-similar protein 3 | chr3:1270...   638   0.0  
AT3G04680.1 | Symbols: CLPS3 | CLP-similar protein 3 | chr3:1270...   638   0.0  
AT5G39930.1 | Symbols: CLPS5 | CLP1-similar protein 5 | chr5:159...   437   e-123
AT5G11010.1 | Symbols:  | Pre-mRNA cleavage complex II protein f...    68   1e-11
AT5G11010.3 | Symbols:  | Pre-mRNA cleavage complex II protein f...    68   1e-11
AT5G11010.2 | Symbols:  | Pre-mRNA cleavage complex II protein f...    68   1e-11

>AT3G04680.2 | Symbols: CLPS3 | CLP-similar protein 3 |
           chr3:1270053-1272415 REVERSE LENGTH=444
          Length = 444

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/418 (72%), Positives = 370/418 (88%), Gaps = 3/418 (0%)

Query: 23  IKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYGA 82
           +KQVKLERESELRIEV ++ PLRLR++NGTAEIFG+ELPPEIW  FPPR+KFAVFTWYGA
Sbjct: 23  LKQVKLERESELRIEV-SEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGA 81

Query: 83  TIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTDS 142
           TIEMDG TETDYTADETPMVSY+NVHA+L+ RR  AKAS S+DPESSQGPRVIVVGPTDS
Sbjct: 82  TIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDS 141

Query: 143 GKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPLV 202
           GKSTL++MLLSWAAKQGW+PTF+DLD+GQGSITIPG IAA PIEMP+DPVEG PL++ LV
Sbjct: 142 GKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGSIAAAPIEMPLDPVEGFPLDMALV 201

Query: 203 YFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLLH 262
           Y++GH++P+ N  E+Y+ +VKELA +LE+QF GN ESRAAGMVINTMGWIEG+GYELLLH
Sbjct: 202 YYYGHASPNMNV-ELYKALVKELAQVLEKQFVGNPESRAAGMVINTMGWIEGIGYELLLH 260

Query: 263 SIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKIR 322
           +I TF A+VVLVLGQEKL S LK+ L+ +  VDVVKL +SGGVV+R  +VR+ +R++KI+
Sbjct: 261 AIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQ 320

Query: 323 EYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNI-NHD 381
           EYFYGL  +LSP++N ++FSDL V+RIGGGPQAP+SALP G+   ++P R+ PVNI + D
Sbjct: 321 EYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRD 380

Query: 382 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNI 439
           LLH+VLAVS+A+EPD+IISSNV+GF+YVT++++Q+KKITYLAPS G LPSK L+ G++
Sbjct: 381 LLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSL 438


>AT3G04680.1 | Symbols: CLPS3 | CLP-similar protein 3 |
           chr3:1270053-1272415 REVERSE LENGTH=444
          Length = 444

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/418 (72%), Positives = 370/418 (88%), Gaps = 3/418 (0%)

Query: 23  IKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYGA 82
           +KQVKLERESELRIEV ++ PLRLR++NGTAEIFG+ELPPEIW  FPPR+KFAVFTWYGA
Sbjct: 23  LKQVKLERESELRIEV-SEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGA 81

Query: 83  TIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTDS 142
           TIEMDG TETDYTADETPMVSY+NVHA+L+ RR  AKAS S+DPESSQGPRVIVVGPTDS
Sbjct: 82  TIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDS 141

Query: 143 GKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPLV 202
           GKSTL++MLLSWAAKQGW+PTF+DLD+GQGSITIPG IAA PIEMP+DPVEG PL++ LV
Sbjct: 142 GKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGSIAAAPIEMPLDPVEGFPLDMALV 201

Query: 203 YFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLLH 262
           Y++GH++P+ N  E+Y+ +VKELA +LE+QF GN ESRAAGMVINTMGWIEG+GYELLLH
Sbjct: 202 YYYGHASPNMNV-ELYKALVKELAQVLEKQFVGNPESRAAGMVINTMGWIEGIGYELLLH 260

Query: 263 SIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKIR 322
           +I TF A+VVLVLGQEKL S LK+ L+ +  VDVVKL +SGGVV+R  +VR+ +R++KI+
Sbjct: 261 AIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQ 320

Query: 323 EYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNI-NHD 381
           EYFYGL  +LSP++N ++FSDL V+RIGGGPQAP+SALP G+   ++P R+ PVNI + D
Sbjct: 321 EYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRD 380

Query: 382 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNI 439
           LLH+VLAVS+A+EPD+IISSNV+GF+YVT++++Q+KKITYLAPS G LPSK L+ G++
Sbjct: 381 LLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSL 438


>AT5G39930.1 | Symbols: CLPS5 | CLP1-similar protein 5 |
           chr5:15985249-15987240 REVERSE LENGTH=424
          Length = 424

 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/418 (52%), Positives = 306/418 (73%), Gaps = 5/418 (1%)

Query: 23  IKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYGA 82
           I++VKLE++SELRIE+   +PLRLRLL+G AEIFG ELP E+W+ FPP + FAVFTWYGA
Sbjct: 6   IRRVKLEKQSELRIELQPTSPLRLRLLDGKAEIFGYELPHEVWITFPPLMTFAVFTWYGA 65

Query: 83  TIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTDS 142
           TIE+DG T  +Y + ETPMV+Y+ +H  L+ +R R  +S  D   S +GPRVI+VG  DS
Sbjct: 66  TIEIDGITGNEYISCETPMVNYLGLHNSLQVQRHRVTSSTRDSASSQEGPRVIIVGDIDS 125

Query: 143 GKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPLV 202
           GKSTL++MLL+WA K GWKPTF+DL++GQ SITIPG IAA PI+M +DPVEG PL+  L+
Sbjct: 126 GKSTLAKMLLNWAVKDGWKPTFVDLNVGQSSITIPGTIAAAPIKMLVDPVEGFPLDKALI 185

Query: 203 YFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLLH 262
           ++ G + PS N   +YR +V+ELA  L+ +F+ NAESRA+GMVI+TMG+I   GY LLLH
Sbjct: 186 HYFGLTNPSVN-LRLYRTLVEELARELKEEFSANAESRASGMVIDTMGFIVREGYALLLH 244

Query: 263 SIRTFKANVVLVLGQ-EKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKI 321
           +IRTF A++V+V+GQ EKL   LK  LK +  + V+ L++S GV SR+S  R+  R+  I
Sbjct: 245 AIRTFNASLVIVVGQEEKLVYDLKKNLKFKKNLQVLNLEKSEGVFSRSSDFRKTLRNSNI 304

Query: 322 REYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNINHD 381
           + YFYG+ NDL+ ++    FSD+ VYRIG    +  ++     +   DP ++  V I+  
Sbjct: 305 QNYFYGVTNDLTVYTKTVKFSDVQVYRIGDFRVSGSTS---AHQRGNDPLKITLVTIDEH 361

Query: 382 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNI 439
           L++ VLA+S+A +PD+IISS VAGF+ + ++DI  ++ITY++PSA ELPSK LI+G +
Sbjct: 362 LVNKVLAISYAIKPDQIISSIVAGFVCIKNVDISEERITYVSPSAAELPSKILILGTL 419


>AT5G11010.1 | Symbols:  | Pre-mRNA cleavage complex II protein
           family | chr5:3484176-3485831 FORWARD LENGTH=318
          Length = 318

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 118 AKASPSDDPESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIP 177
           + A+ S    S Q    +V GP +SGKST SR L+    ++  +  ++D D+GQ   T P
Sbjct: 16  SNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAP 75

Query: 178 GCIAATPIEMPIDPVEGIPLEIPLV------YFHGHSAPSNNTAEIYRVIVKELAGILER 231
           G ++ T ++  I   +     +P V      +F+G    S    + Y   V  L    + 
Sbjct: 76  GFLSLTIVDKSILESDWT---VPCVKTPERCFFYG-DVSSKRDPKAYLRYVYTLFDYYQL 131

Query: 232 QFAGNAESRAA-GMVINTMGWIEGLGYELLLHSIR 265
            F  ++E++    +VINT GW++G+GYELL+  +R
Sbjct: 132 HFCKSSENKTELPLVINTPGWVKGIGYELLVDVLR 166


>AT5G11010.3 | Symbols:  | Pre-mRNA cleavage complex II protein
           family | chr5:3484176-3486067 FORWARD LENGTH=368
          Length = 368

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 118 AKASPSDDPESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIP 177
           + A+ S    S Q    +V GP +SGKST SR L+    ++  +  ++D D+GQ   T P
Sbjct: 16  SNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAP 75

Query: 178 GCIAATPIEMPIDPVEGIPLEIPLV------YFHGHSAPSNNTAEIYRVIVKELAGILER 231
           G ++ T ++  I   +     +P V      +F+G    S    + Y   V  L    + 
Sbjct: 76  GFLSLTIVDKSILESDWT---VPCVKTPERCFFYG-DVSSKRDPKAYLRYVYTLFDYYQL 131

Query: 232 QFAGNAESRAA-GMVINTMGWIEGLGYELLLHSIR 265
            F  ++E++    +VINT GW++G+GYELL+  +R
Sbjct: 132 HFCKSSENKTELPLVINTPGWVKGIGYELLVDVLR 166


>AT5G11010.2 | Symbols:  | Pre-mRNA cleavage complex II protein
           family | chr5:3484176-3486067 FORWARD LENGTH=368
          Length = 368

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 118 AKASPSDDPESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIP 177
           + A+ S    S Q    +V GP +SGKST SR L+    ++  +  ++D D+GQ   T P
Sbjct: 16  SNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAP 75

Query: 178 GCIAATPIEMPIDPVEGIPLEIPLV------YFHGHSAPSNNTAEIYRVIVKELAGILER 231
           G ++ T ++  I   +     +P V      +F+G    S    + Y   V  L    + 
Sbjct: 76  GFLSLTIVDKSILESDWT---VPCVKTPERCFFYG-DVSSKRDPKAYLRYVYTLFDYYQL 131

Query: 232 QFAGNAESRAA-GMVINTMGWIEGLGYELLLHSIR 265
            F  ++E++    +VINT GW++G+GYELL+  +R
Sbjct: 132 HFCKSSENKTELPLVINTPGWVKGIGYELLVDVLR 166