Miyakogusa Predicted Gene

Lj5g3v2267380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2267380.1 Non Chatacterized Hit- tr|I1FEF1|I1FEF1_AMPQE
Uncharacterized protein OS=Amphimedon queenslandica GN,31.56,7e-18,no
description,Zinc finger, RING/FYVE/PHD-type; RING/U-box,NULL;
ZF_RING_2,Zinc finger, RING-type; Z,CUFF.57182.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10370.1 | Symbols:  | helicase domain-containing protein / I...   276   6e-75
AT4G01020.1 | Symbols:  | helicase domain-containing protein / I...   274   5e-74

>AT5G10370.1 | Symbols:  | helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related |
            chr5:3261245-3267188 FORWARD LENGTH=1775
          Length = 1775

 Score =  276 bits (707), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 177/241 (73%), Gaps = 1/241 (0%)

Query: 1    MCSRDGCSIRSSIQQETGTYILFDRHNQNLRIFGSPDKIDLAQQKLIQSLLSLHEGRQLV 60
            + SRDG ++   IQQET TYIL DRHN  +RI G+ +KI  A+Q+LIQ+L+  HE +QL 
Sbjct: 1423 LMSRDGINLMRKIQQETETYILLDRHNLTVRICGTSEKIAKAEQELIQALMDYHESKQLE 1482

Query: 61   IHLRGKDLPPDLMKQVVKNFGPDLHGLKQKVPGVDLNLNTRSQQIFLHGNKELKPRVEET 120
            IHLRG ++ PDLMK+VVK FGP+L G+K+KV GVDL LNTR   I +HG+KE++  V++ 
Sbjct: 1483 IHLRGPEIRPDLMKEVVKRFGPELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMRQEVQKM 1542

Query: 121  ILEIARSSNDLVKRHD-TGPSCPICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIKNQGI 179
            + E+AR  + L ++ D     CPICL EV+DGY LEGC HLFC+ CL+EQ E++++N   
Sbjct: 1543 VNELAREKSALGEKPDEIEVECPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDA 1602

Query: 180  FPICCSQEGCGDPILLTDLRSFLLNDKLEELFRASLGAFVVASGGTYRFCPSPDCPSIYR 239
            FPI CS   CG PI+L D+R+ L  +KL+ELF ASL +FV +S G +RFC +PDCPS+YR
Sbjct: 1603 FPILCSHIDCGAPIVLADMRALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYR 1662

Query: 240  V 240
            V
Sbjct: 1663 V 1663


>AT4G01020.1 | Symbols:  | helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related |
            chr4:439086-445043 FORWARD LENGTH=1787
          Length = 1787

 Score =  274 bits (700), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 175/241 (72%), Gaps = 1/241 (0%)

Query: 1    MCSRDGCSIRSSIQQETGTYILFDRHNQNLRIFGSPDKIDLAQQKLIQSLLSLHEGRQLV 60
            + SRDG ++   IQQET TYIL DRHN  +RI G+ +KI  A+Q+L+QSL+  HE +QL 
Sbjct: 1420 LMSRDGINLMRKIQQETETYILLDRHNLTVRICGTSEKIAKAEQELVQSLMDYHESKQLE 1479

Query: 61   IHLRGKDLPPDLMKQVVKNFGPDLHGLKQKVPGVDLNLNTRSQQIFLHGNKELKPRVEET 120
            IHLRG ++ PDLMK+VVK FGP+L G+K+KV GVDL LNTR   I +HG+KE++  V++ 
Sbjct: 1480 IHLRGPEIRPDLMKEVVKRFGPELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMRQEVQKM 1539

Query: 121  ILEIARSSNDLVKRHDTGP-SCPICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIKNQGI 179
            + E+AR  + L ++ D     CPICL EV+DGY LEGC HLFC+ CL+EQ E++++N   
Sbjct: 1540 VNELAREKSALGEKPDEIELECPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDA 1599

Query: 180  FPICCSQEGCGDPILLTDLRSFLLNDKLEELFRASLGAFVVASGGTYRFCPSPDCPSIYR 239
            FPI CS   CG PI++ D+R+ L  +KL+EL  ASL AFV +S G  RFC +PDCPSIYR
Sbjct: 1600 FPILCSHIDCGAPIVVADMRALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYR 1659

Query: 240  V 240
            V
Sbjct: 1660 V 1660