Miyakogusa Predicted Gene
- Lj5g3v2266340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2266340.1 Non Chatacterized Hit- tr|D8Q242|D8Q242_SCHCM
Putative uncharacterized protein OS=Schizophyllum
comm,31.33,2e-18,ATP-DEPENDENT RNA HELICASE,NULL;
HA2,Helicase-associated domain; OB_NTP_bind,Domain of unknown
funct,CUFF.57148.1
(552 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 623 e-179
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 620 e-177
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 92 7e-19
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1... 84 2e-16
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote... 84 2e-16
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c... 82 9e-16
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei... 79 6e-15
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:193... 72 1e-12
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:230... 71 2e-12
AT5G14900.1 | Symbols: | helicase associated (HA2) domain-conta... 70 4e-12
AT1G26370.1 | Symbols: | RNA helicase family protein | chr1:912... 65 2e-10
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:101... 60 3e-09
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related |
chr5:3261245-3267188 FORWARD LENGTH=1775
Length = 1775
Score = 623 bits (1607), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/533 (57%), Positives = 389/533 (72%), Gaps = 4/533 (0%)
Query: 21 SIEMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALA 80
+I MA++NL+QLG + N HELT EG CLVK+G+EP+LGKLILGC H + +EGI LA
Sbjct: 693 AIAMAVQNLVQLGAVVEKNGVHELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLA 752
Query: 81 AMMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWCWE 140
A+M NASSIFCRVGN DK ++D KVQFC+++GDLFTLLSVY EW +LP ER+NKWCWE
Sbjct: 753 AVMANASSIFCRVGNFDDKMKADRLKVQFCNQNGDLFTLLSVYKEWASLPRERRNKWCWE 812
Query: 141 NSINAKSMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENV 200
NS+NAKSMRRC DT EL C+EREL+ +PSYW W+P + + HD ++K VIL+SLAENV
Sbjct: 813 NSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDKHLKMVILASLAENV 872
Query: 201 ATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQ 260
A Y+G NQLGYEVA TG+ VQLHPSCSLL F ++P WVVFGELLS+ ++YLVCV+A DF+
Sbjct: 873 AMYTGYNQLGYEVALTGQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTACDFE 932
Query: 261 SLHGLHPPPLFDVSKMEERKLQMKTLTGFGTILLRRFCGKANSNLLGLVSRIRKACMDER 320
+L+ L PPP FDVS+M+ER+L++K + G + +L+RFCGK+N +LL +VSR R C DER
Sbjct: 933 ALYMLDPPPPFDVSQMDERRLRIKKVVGCSSTVLKRFCGKSNRSLLSIVSRARSLCSDER 992
Query: 321 IFIQVNVDQHDAQLYATSHDMNTALRLVDDVLECEKKWLRAECMEKCLYHGSGFSPPVAL 380
I IQV+VDQ++ +LYA DM LV+D LECEKKW+ EC+EK LYHG G P+AL
Sbjct: 993 IGIQVDVDQNEIRLYAPPLDMEKVSALVNDALECEKKWMHNECLEKYLYHGRG-QVPIAL 1051
Query: 381 FGSGAEIKHLELDKRSLSVDVYHPNVSAIDDKELLMFFEKNTSCCICSVHKFTGMAKDVE 440
FGSGA+IKHLE+D+R L+VDV + +DD+ELL F EK ICS++KF +D +
Sbjct: 1052 FGSGAQIKHLEVDQRFLTVDVLYYGDDVVDDRELLTFLEKKIDGSICSIYKFAANKQDCD 1111
Query: 441 DGEKWGRITFLSPDAAKRAAELDGEEFSGSSLKIVTSQSATGG--SKPFSFPAVKAKIYW 498
+ EKWGRITFL+P++A +A E+ F GS LK+ S S GG P+ F +V AKI W
Sbjct: 1112 EKEKWGRITFLTPESAMKATEIQKFYFKGSVLKLFPSLSTGGGIFKMPY-FSSVTAKIRW 1170
Query: 499 PRRLSKGVAIVKCDIQDVRFILSEFYNLAIGGRYVRCQISNKCADSVGISGFA 551
PRR S G +KC D+ IL + +L IG YV Q + DS+ ISG
Sbjct: 1171 PRRESSGRGCLKCPSGDIHRILGDISSLEIGTNYVHIQRDQQSNDSILISGLG 1223
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related |
chr4:439086-445043 FORWARD LENGTH=1787
Length = 1787
Score = 620 bits (1598), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/533 (56%), Positives = 389/533 (72%), Gaps = 4/533 (0%)
Query: 21 SIEMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALA 80
+I MAI+NL+QLG + N ELT EG CLVK+G+EP+LGKLILGC H + +EGI LA
Sbjct: 690 AIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLA 749
Query: 81 AMMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWCWE 140
A+M NASSIFCRVGN DK ++D KVQFC+ +GDLFTLLSVY EW +LP +R+NKWCWE
Sbjct: 750 AVMANASSIFCRVGNFDDKMKADRLKVQFCNDNGDLFTLLSVYKEWASLPRDRRNKWCWE 809
Query: 141 NSINAKSMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENV 200
NS+NAKSMRRC DT EL C+EREL+ +PSYW W+P + + HD +K VIL+SLAENV
Sbjct: 810 NSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDKYLKMVILASLAENV 869
Query: 201 ATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQ 260
A Y+G +QLGYEVA T + VQLHPSCSLL F ++P WVVFGELLS+ ++YLVCV+AFDF+
Sbjct: 870 AMYTGYDQLGYEVALTSQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTAFDFE 929
Query: 261 SLHGLHPPPLFDVSKMEERKLQMKTLTGFGTILLRRFCGKANSNLLGLVSRIRKACMDER 320
+L+ L PPP FD S+M+ER+L++K + G + +L+RFCGK+N +LL +VSR R C DER
Sbjct: 930 ALYMLDPPPPFDASQMDERRLRVKKVVGCSSTVLKRFCGKSNRSLLSIVSRARSLCSDER 989
Query: 321 IFIQVNVDQHDAQLYATSHDMNTALRLVDDVLECEKKWLRAECMEKCLYHGSGFSPPVAL 380
I IQV+VDQ++ +LYA+ DM LV+D LECEKKW+R EC+EK L+HG G P+AL
Sbjct: 990 IGIQVDVDQNEIRLYASPLDMEKVSALVNDALECEKKWMRNECLEKYLFHGRG-QIPIAL 1048
Query: 381 FGSGAEIKHLELDKRSLSVDVYHPNVSAIDDKELLMFFEKNTSCCICSVHKFTGMAKDVE 440
FGSGA+IKHLE+D+R L+VDV++ +DD+ELL F EK CICS++KF +D +
Sbjct: 1049 FGSGAQIKHLEVDQRFLTVDVHYYGDDVVDDRELLTFLEKKIDGCICSIYKFAANKQDCD 1108
Query: 441 DGEKWGRITFLSPDAAKRAAELDGEEFSGSSLKIVTSQSATGG--SKPFSFPAVKAKIYW 498
+ EKWGRITFL+P++A +A E+ +F GS LK+ S S GG P+ F +V AKI W
Sbjct: 1109 EKEKWGRITFLTPESAMKATEIQKFDFKGSVLKVFPSLSTGGGIFKMPY-FSSVTAKIRW 1167
Query: 499 PRRLSKGVAIVKCDIQDVRFILSEFYNLAIGGRYVRCQISNKCADSVGISGFA 551
PR+ S G +KC D+ IL + +L IG YV Q DS+ ISG
Sbjct: 1168 PRKESSGRGCLKCPSGDIHSILGDITSLEIGTNYVHIQRDQLSNDSILISGLG 1220
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE LENGTH=1168
Length = 1168
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 36/249 (14%)
Query: 44 LTDEGRCLVKMGIEPRLGKLIL-----GCSGHCLRREGIALAAMMTNASSIFCRVGNEGD 98
LT GR + + +EP L K++L GCS L + AM+ +IF R +
Sbjct: 923 LTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEIL-----TMIAMI-QTGNIFYRPREK-- 974
Query: 99 KQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKN---KWCWENSINAKSMRRCHDTY 155
+ ++D + +F +GD TLL+VY W+A KN WC+EN I ++S+RR D
Sbjct: 975 QAQADQKRAKFFQPEGDHLTLLAVYEAWKA-----KNFSGPWCFENFIQSRSLRRAQDVR 1029
Query: 156 LELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENVATYSGCNQLGYEVAQ 215
+L+S +++ ++ D + T ++K I + + A Q GY
Sbjct: 1030 KQLLSIMDK---------YKLDVVTAGKNFTKIRKAITAGFFFHGARKD--PQEGYRTLV 1078
Query: 216 TGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQSLHGLHPP--PLFDV 273
+ V +HPS +L F +P WV++ +L+ + EY+ V+ D + L L P + D
Sbjct: 1079 ENQPVYIHPSSAL--FQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDP 1136
Query: 274 SKMEERKLQ 282
+KM +RK Q
Sbjct: 1137 TKMSKRKRQ 1145
>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1034
Length = 1034
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 29 LIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALAAMMTNASS 88
L LG + N ELT GR + + ++P L K+I+ + E I++AAM++ S
Sbjct: 790 LFALGAL---NKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGGS 846
Query: 89 IFCRVGNEGDKQ-RSDCHKVQFCHRD-GDLFTLLSVYMEWEALPTERKNKWCWENSINAK 146
IF R DKQ +D ++ F + GD LL VY W+ T +WC+EN I +
Sbjct: 847 IFYR---PKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKE--TNFSTQWCYENYIQVR 901
Query: 147 SMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENVATYSGC 206
SM+R D +L LER + + D +++K I++ + A
Sbjct: 902 SMKRARDIRDQLEGLLERVEIDISSNLNELD---------SVRKSIVAGFFPHTAKLQKN 952
Query: 207 NQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQSLHGLH 266
Y + + V +HP+ L P WVV+ EL+ S EY+ V+ + L L
Sbjct: 953 G--SYRTVKHPQTVHIHPNSGLSQVL--PRWVVYHELVLTSKEYMRQVTELKPEWLIELA 1008
Query: 267 P 267
P
Sbjct: 1009 P 1009
>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1044
Length = 1044
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 29 LIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALAAMMTNASS 88
L LG + N ELT GR + + ++P L K+I+ + E I++AAM++ S
Sbjct: 800 LFALGAL---NKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGGS 856
Query: 89 IFCRVGNEGDKQ-RSDCHKVQFCHRD-GDLFTLLSVYMEWEALPTERKNKWCWENSINAK 146
IF R DKQ +D ++ F + GD LL VY W+ T +WC+EN I +
Sbjct: 857 IFYR---PKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKE--TNFSTQWCYENYIQVR 911
Query: 147 SMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENVATYSGC 206
SM+R D +L LER + + D +++K I++ + A
Sbjct: 912 SMKRARDIRDQLEGLLERVEIDISSNLNELD---------SVRKSIVAGFFPHTAKLQKN 962
Query: 207 NQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQSLHGLH 266
Y + + V +HP+ L P WVV+ EL+ S EY+ V+ + L L
Sbjct: 963 G--SYRTVKHPQTVHIHPNSGLSQVL--PRWVVYHELVLTSKEYMRQVTELKPEWLIELA 1018
Query: 267 P 267
P
Sbjct: 1019 P 1019
>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
chr5:4122747-4128660 FORWARD LENGTH=1255
Length = 1255
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 28/272 (10%)
Query: 4 ILILWMLQVLGLLRWR----SSIEMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPR 59
+L+L L++ LL + E + ++ QL V+ NN LTD G +V+ ++P
Sbjct: 926 VLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPP 985
Query: 60 LGKLIL-GCSGHCLRREGIALAAMMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFT 118
L K++L G C+ E + + +M++ S+F R ++ SD + +F + D T
Sbjct: 986 LAKMLLMGERLDCID-EVLTIVSMLS-VPSVFFRPKERAEE--SDAAREKFFVPESDHLT 1041
Query: 119 LLSVYMEWEALPTERKNKWCWENSINAKSMRRCHDTYLELVSCLER---ELSFFTPSYWR 175
LL+VY +W+ + + WC ++ + K +R+ + +L+ L++ EL P
Sbjct: 1042 LLNVYQQWKE--HDYRGDWCNDHYLQVKGLRKAREVRSQLLDILKQLKIELRSCGPD--- 1096
Query: 176 WDPYKPSFHDTNMKKVILSSLAENVATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERP 235
WD ++K I S+ N A G + Y +TG LHPS +L P
Sbjct: 1097 WD---------IVRKAICSAYFHNSARLKGVGE--YVNCRTGMPCHLHPSSALYGLGYTP 1145
Query: 236 GWVVFGELLSVSNEYLVCVSAFDFQSLHGLHP 267
+VV+ EL+ + EY+ C ++ + L L P
Sbjct: 1146 DYVVYHELILTTKEYMQCATSVEPHWLAELGP 1177
>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
chr2:14872728-14879615 FORWARD LENGTH=1044
Length = 1044
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 20/235 (8%)
Query: 23 EMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALAAM 82
E I++L L + N ELT GR + + ++P L K+I+ + E I++AAM
Sbjct: 791 EALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAM 850
Query: 83 MTNASSIFCRVGNEGDKQRSDCHKVQFCH--RDGDLFTLLSVYMEWEALPTERKNKWCWE 140
++ SIF R DKQ + ++ H GD L +Y W+ T +WC+E
Sbjct: 851 LSIGPSIFYR---PKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKE--TNYSTQWCYE 905
Query: 141 NSINAKSMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENV 200
N I +SM+R D +L LER + + D +++K I++ +
Sbjct: 906 NYIQVRSMKRARDIRDQLEGLLERVEIDVSSNANELD---------SIRKSIVAGFFPHT 956
Query: 201 ATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVS 255
A Y + + V +HP+ L P WVV+ +L+ S EY+ V+
Sbjct: 957 AKLQKNG--SYRTVKHPQTVHIHPASGLSQVL--PRWVVYHQLVLTSKEYMRQVT 1007
>AT2G47250.1 | Symbols: | RNA helicase family protein |
chr2:19399923-19402981 REVERSE LENGTH=729
Length = 729
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 17/234 (7%)
Query: 23 EMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALAAM 82
E +R L L + ++ LT G + + ++P++ K+++ E ++++AM
Sbjct: 465 ETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAM 524
Query: 83 MTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWCWENS 142
++ + C V ++ +D K +F H DGD TLL+VY ++ WC+EN
Sbjct: 525 LSVPN---CFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQ--NNEDPNWCFENF 579
Query: 143 INAKSMRRCHDTYLELVSCLER-ELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENVA 201
+N ++M+ + +LV + R L + + D Y N++K +L+ VA
Sbjct: 580 VNNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYY------VNIRKAMLAGYFMQVA 633
Query: 202 TYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVS 255
Y + + V LHPS L +P WV++ E + + ++ V+
Sbjct: 634 HLERTGH--YLTVKDNQVVHLHPSNCL---DHKPEWVIYNEYVLTTRNFIRTVT 682
>AT3G62310.1 | Symbols: | RNA helicase family protein |
chr3:23057516-23060561 REVERSE LENGTH=726
Length = 726
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 20/232 (8%)
Query: 25 AIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALAAMMT 84
A+ L LG + + N LT G + + ++P++ K+++ E ++++AM++
Sbjct: 466 ALEVLNYLGALDDDGN---LTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLS 522
Query: 85 NASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWCWENSIN 144
+ C + ++ +D K +F H +GD TLL+VY ++ WC+EN IN
Sbjct: 523 VPN---CFIRPREAQKAADEAKARFGHIEGDHLTLLNVYHAFKQ--NNEDPNWCYENFIN 577
Query: 145 AKSMRRCHDTYLELVSCLER-ELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENVATY 203
++M+ + +LV + R L + + D Y N++K +L+ VA
Sbjct: 578 NRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYY------INIRKAMLAGYFMQVAHL 631
Query: 204 SGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVS 255
Y + + V LHPS L +P WV++ E + S ++ V+
Sbjct: 632 ERTGH--YLTVKDNQVVHLHPSNCL---DHKPEWVIYNEYVLTSRNFIRTVT 678
>AT5G14900.1 | Symbols: | helicase associated (HA2)
domain-containing protein | chr5:4822676-4823581 REVERSE
LENGTH=301
Length = 301
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 24/260 (9%)
Query: 4 ILILWMLQVLGLLRWR-------SSIEMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGI 56
+L L L V L+R+ ++ A+ +L LG + + N LT G + + +
Sbjct: 8 VLTLKGLSVKNLVRFDLIDSPAPDTLARALDDLYHLGALDDDCN---LTKTGEMMSEFPL 64
Query: 57 EPRLGKLILGCSGHCLRREGIALAAMMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDL 116
+P++ K+++ E ++++AM++ + F R E K +D K F H DGD
Sbjct: 65 DPQMAKMLIVSPQFNCSNEILSISAMLS-VPNCFIRPRGEAQKA-ADEAKSSFAHIDGDH 122
Query: 117 FTLLSVYMEWEALPTERKNKWCWENSINAKSMRRCHDTYLELVSCLER-ELSFFTPSYWR 175
TLL+++ + L + WC IN ++M+ +LV + R ++ +P +
Sbjct: 123 LTLLNLFHAF--LQNNQDPNWCCTKFINYRAMKSAVSVREQLVRIMLRFQIKLCSPDFNS 180
Query: 176 WDPYKPSFHDTNMKKVILSSLAENVATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERP 235
D Y N++K +L+ VA + + V LHPS L +P
Sbjct: 181 RDYY------VNIRKALLAGYFMQVAHLERTGHYLTFRDKDDQVVHLHPSNCL---DHKP 231
Query: 236 GWVVFGELLSVSNEYLVCVS 255
WVV+ E + S ++ V+
Sbjct: 232 EWVVYNEYVFTSRNFIRTVT 251
>AT1G26370.1 | Symbols: | RNA helicase family protein |
chr1:9122030-9125368 REVERSE LENGTH=717
Length = 717
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 36/264 (13%)
Query: 19 RSSIEMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGK-LILGCSGHCLRREGI 77
R +I A+ L LG + + G + ++ +EP K LIL +CL I
Sbjct: 468 RGAIIKALAELHSLGALADDGKLENPV--GYQMSRLPLEPVYSKALILANQFNCLEEMLI 525
Query: 78 ALAAMMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERK--- 134
+A + + SIF + ++ R+ K F +GD T LSVY E + +RK
Sbjct: 526 TVAVL--SVESIFYDPREKREEARTS--KNHFASVEGDHLTYLSVYRESDEFLEKRKAAG 581
Query: 135 ---------NKWCWENSINAKSMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHD 185
KWC EN +N++S++ D Y ++ +E ++ F S
Sbjct: 582 SGNNIDKIMKKWCKENYVNSRSLKHARDIYRQIREHVE-QIGFNVSSCG----------- 629
Query: 186 TNMKKVILSSLAENVATYSGCNQLG--YEVAQTGRCVQLHPSCSLLVFAERPGWVVFGEL 243
N LA + + QL Y ++G V +HP+ L F +P V+F EL
Sbjct: 630 -NDMLAFRRCLAASFFLKAAQRQLDGTYRALESGEVVHIHPTSVL--FRAKPECVIFNEL 686
Query: 244 LSVSNEYLVCVSAFDFQSLHGLHP 267
+ S +Y+ ++ D L L P
Sbjct: 687 MQTSKKYIKNLTIIDSLWLSELAP 710
>AT4G18465.1 | Symbols: | RNA helicase family protein |
chr4:10197056-10201611 FORWARD LENGTH=695
Length = 695
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 25/252 (9%)
Query: 21 SIEMAIRNLIQLGVIKLNNNFHELTDE-GRCLVKMGIEPRLGKLILGCSGHCLRREGIAL 79
S E IR L L +++ ++ +LT G + ++ ++P + K+IL S E I +
Sbjct: 452 SSEAMIRALEVLYSLQILDDDAKLTSPTGFQVAELPLDPMISKMILASSELGCSHEIITI 511
Query: 80 AAMMTNASS-IFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWC 138
AA+++ S I R G ++ D K++F +GD T L+VY + L +++ +WC
Sbjct: 512 AAVLSVQSVWIIAR----GVQKEQDEAKLRFAAAEGDHVTFLNVYKGF--LESKKPTQWC 565
Query: 139 WENSINAKSMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNM---KKVILSS 195
++N +N +SM++ + +L + R L S D +M +K + +
Sbjct: 566 YKNFLNYQSMKKVVEIRDQL-KRIARRLGITLKSC-----------DGDMEAVRKAVTAG 613
Query: 196 LAENVATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVS 255
N + Y+ + V +HPS L F P WVV+ ++S +Y+ V
Sbjct: 614 FFANACRLEPHSNGVYKTIRGSEEVYIHPSSVL--FRVNPKWVVYQSIVSTERQYMRNVV 671
Query: 256 AFDFQSLHGLHP 267
+ L + P
Sbjct: 672 TINPSWLTEVAP 683