Miyakogusa Predicted Gene

Lj5g3v2266310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2266310.1 Non Chatacterized Hit- tr|D7TLY6|D7TLY6_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,40,2e-16,no
description,NULL; F-box domain,F-box domain, cyclin-like,CUFF.57144.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39490.1 | Symbols:  | F-box family protein | chr2:16487151-1...   218   6e-57
AT1G61330.1 | Symbols:  | FBD, F-box and Leucine Rich Repeat dom...    58   1e-08
AT3G28410.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    48   9e-06

>AT2G39490.1 | Symbols:  | F-box family protein |
           chr2:16487151-16488464 REVERSE LENGTH=387
          Length = 387

 Score =  218 bits (555), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 224/383 (58%), Gaps = 11/383 (2%)

Query: 1   MEDSVEDLFRNLPVEILSSIVSFLPKESALEPSLISIRWRDLWNK-VLVRH---GTRDDV 56
           ME+   D+   LP+E+L  I+SFLP ESA    L+S R+R +WN+ +LV H   G+ +D+
Sbjct: 1   MEEHKPDILSCLPLELLLYIISFLPFESARLTPLVSTRFRSVWNQAILVAHSHNGSIEDI 60

Query: 57  TGVVAGFLSSFEELEPLKHPHKLQFHFAEDSSVLFANIATNSKLLLDF---SAVKKEFER 113
           +  V+ F+++F+E +P K+  KL+ H  + S+ +   +A ++ + + F      KKE   
Sbjct: 61  SHAVSRFINNFDEHDPSKNTRKLELH-VDKSTFVSTILAPHNVMHMSFFFSGGSKKEESF 119

Query: 114 SYELHFKFSTQQQITNKPSFMVKILYLKSVSNLASEAVSSIVSNLEHLENLVIMDCSGLQ 173
            + L       +++ +   F+VK L L SV++L  E VSS+V     L++L I  C  L 
Sbjct: 120 CWRLEIDDQIPRRV-DSSGFLVKTLCLDSVNSLTHEVVSSMVLEFSLLDSLKICRCKRLT 178

Query: 174 SLFIESESKLHKLTILDCLKLKSLHLRTSKLKSFKYHGPFPRIWPESHFNLSDATLDFRL 233
           SL I+S +KL  L+I  C KL+ L + + KLK+F Y G  P I    HFNL+ A  D   
Sbjct: 179 SLTIDSPTKLLHLSISGCPKLRYLEIISFKLKTFHYQGSLPLIKIHEHFNLTKAVFDVTQ 238

Query: 234 GPCSSDFKAQDFNETLLTIKNSQVLTICKWTFEALIWPSISPSSGNFIFYKLRELWWIDN 293
           GP   +  A D     LTIKNSQ LT+C+W FE +I PSIS S  +F FYKL+EL WIDN
Sbjct: 239 GPSYYN-NALDIGPLSLTIKNSQSLTLCRWMFEEVIKPSISSSWRSFQFYKLQELRWIDN 297

Query: 294 HVYENSIDALVSFLKLCPALEQLFVTIDPKSFSTPRSNSGLMQAAKYTELEHLKLIKFVG 353
            + +  I++L+SFLKLCP++E+LF+TID  ++S+    S     A+   L  L+++K  G
Sbjct: 298 SMNQEQINSLISFLKLCPSIERLFITIDSNTYSSNEEVSVNADHARVV-LRDLEVVKLEG 356

Query: 354 FTNQVDEISVAKILIKVVKGKPP 376
           F ++ D+  +   L ++V    P
Sbjct: 357 FKSEEDKNQLIFALQEIVSIDQP 379


>AT1G61330.1 | Symbols:  | FBD, F-box and Leucine Rich Repeat
           domains containing protein | chr1:22622975-22624527
           FORWARD LENGTH=447
          Length = 447

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 166/409 (40%), Gaps = 62/409 (15%)

Query: 8   LFRNLPVEILSSIVSFLPKESALEPSLISIRWRDLWNKVLVRHGTRD-DVTGVVAGFLSS 66
           L + L  E++  I+SFLP +S L+  ++S R+RD W        +RD D +G+ +   S 
Sbjct: 11  LIKRLSDELVECILSFLPVQSTLQHRVLSKRYRDTWK------LSRDLDFSGIFSVRRSQ 64

Query: 67  FEELEPL-------KHPHKLQFHFAED------------SSVLFANIATNSKLLLDFSAV 107
            E +  +       + P   +F  + D             + L  NI    +L+LDFS+ 
Sbjct: 65  SEAVRIIEDVFIQHQGPEIDRFVLSLDHTGVEDKILSWVDTCLRKNI---KELVLDFSSS 121

Query: 108 KKEFERSYELHFKFSTQQQIT---------NKPSFMVKIL-YLKSVS----NLASEAVSS 153
           KK      E+   FS+ + +T           P+ + K L  LK++S     + +E + S
Sbjct: 122 KK----VMEIPLNFSSSETLTVLKLQWCRFEIPNNLPKGLRLLKTLSLMRTEVTNEMIDS 177

Query: 154 IVSNLEHLENLVIMDC----SGLQSLFIESESKLHKLTILDCLKLKSLHLRTSKLKSFKY 209
           I +N  HLE+L ++ C    +G+ +++     K   L +     L S+ L    L+ +KY
Sbjct: 178 IFNNCIHLESLELVKCQMSGNGILTIYAHDHKKFKSLVVSCMPNLLSIFLDAPTLECYKY 237

Query: 210 HGPFPRIWPESHFNLSDATLDFRLGPCSSDFKAQDFNETLLTIKNSQVLTICKWTFEALI 269
            G    I       L +A  +F          +    +++L       LT      EA+ 
Sbjct: 238 DGYAKTINVLKVNALEEA--EFHYSRSKRRHSSDTVVDSMLACSAVHALTTTNILLEAIT 295

Query: 270 WPSISPSSGN--FIFYKLRELWWIDNHVYENSIDALVSFLKLCPALEQLFV-----TIDP 322
           +  +        F F  LRE           ++  +  FLK CP LEQ  +     T +P
Sbjct: 296 YRYLKGKLEKPLFKFENLREFKIFFKAPTFCTLFDIAEFLKECPKLEQFIIDIQNFTFEP 355

Query: 323 KSFSTPRSNSGLMQAAKYTE--LEHLKLIKFVGFTNQVDEISVAKILIK 369
           + +     +   +Q        L+ L  +K +G+     E+ + +  +K
Sbjct: 356 QMYFWEIHHKAQIQNTSNNNYLLKCLTDVKIIGYKGHWHELDIVEFFVK 404


>AT3G28410.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr3:10640152-10642071 REVERSE LENGTH=465
          Length = 465

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 26/202 (12%)

Query: 7   DLFRNLPVEILSSIVSFLPKESALEPSLISIRWRDLWNK-----VLVRHG-TRDDVTGVV 60
           D    +P +IL  I+SF+P + A+  S++S RWR +W +     + ++HG T   +T   
Sbjct: 28  DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETNQTLTSYT 87

Query: 61  AGFLSSFEELEPLKHPHKLQFHFAEDSSVLFA---NIATNSKLLLDFSAVKKEFERSYEL 117
           A  ++SF+ +  L      Q     DS + FA   N+   S  + DF+  K    R  ++
Sbjct: 88  APIITSFKLVMDLNDNTVPQV----DSWIEFALSRNVQNLSVFVRDFTYTKT--YRFPDI 141

Query: 118 HFKFSTQQQITNKPSFMVKI----LYLKSVSNLA-------SEAVSSIVSNLEHLENLVI 166
            +  S+ +Q+     F   I    +  KS+ NL         E++ +I+S    LE+L +
Sbjct: 142 FYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTL 201

Query: 167 MDCSGLQSLFIESESKLHKLTI 188
             C  L+ L +     L +L I
Sbjct: 202 DTCRLLERLDLSKSPNLRRLDI 223