Miyakogusa Predicted Gene
- Lj5g3v2265250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2265250.1 tr|A0DLH3|A0DLH3_PARTE Chromosome undetermined
scaffold_55, whole genome shotgun sequence
OS=Paramec,31.58,5e-18,RNA-binding domain, RBD,NULL; Retrovirus zinc
finger-like domains,Zinc finger, CCHC-type; no descrip,CUFF.57150.1
(573 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protei... 245 6e-65
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 66 6e-11
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 65 1e-10
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 55 2e-07
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 54 4e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 7e-07
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 52 9e-07
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 50 3e-06
AT4G24270.1 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:1258... 50 3e-06
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 8e-06
>AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1
| chr3:20515672-20517832 FORWARD LENGTH=597
Length = 597
Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 162/445 (36%), Positives = 207/445 (46%), Gaps = 108/445 (24%)
Query: 168 EDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEX 227
E++G VP K+YVGGIPY STED+IRSYF SCG I +VDC P+ G F GIA I+F TE
Sbjct: 154 EEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTED 213
Query: 228 XXXXXXXXXXXXMGGLFLKIQPYKIQS-------QKSTRFAPETVEGYNRIYVGNLSGDI 280
MG +L IQ Y + + S+ FAPE V+GYNR+Y+GNL+ D
Sbjct: 214 GAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDT 273
Query: 281 KEGELRKFFSNCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRV 340
E ++RK FS+C I S+R G +KETGEFKGY HVDF DS S+ AL LDQ V+ GRPV++
Sbjct: 274 TERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKI 333
Query: 341 SHAVPLKNLKKKTDEEPGSTGN-------------------------------------T 363
A LK+ + TD PG T N +
Sbjct: 334 CCA--LKD-RPATDHTPGETNNAGSYNMEDTYAAADPVPALAGRSEVDDGNYFATTVSSS 390
Query: 364 KMKNRRCYNCHEKGHFDSQCPKKI-------------------PAVPLTDLQEKPDEERA 404
K+K R CY C EKGH + CP K+ PA+ L + +
Sbjct: 391 KVKRRVCYECGEKGHLSTACPIKLQKADDQANSKLGQETVDGRPAMQSYGLPKNSGDSYY 450
Query: 405 V----PLTNLEEKPDEEPRSTGNTKMKNRRCYNCHEKGHFDSECPKKIPAVPFTD----- 455
+ TN + G K+K R CY C EKGH + CP K+ T+
Sbjct: 451 MNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSHTNSTLDH 510
Query: 456 --------------LQEKP-----------DEERA-VPLT-----NLEEKPDEEPRSTGN 484
LQ+K DE A VP++ + STG
Sbjct: 511 QTVEAGPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDASLTSAVSTG- 569
Query: 485 TKMKNRRCYNCHEKGHFDSECPKKI 509
K+K R CY C EKGH S CP K+
Sbjct: 570 -KIKKRNCYECGEKGHLSSACPNKL 593
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Query: 167 SEDNGGVP-----TKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALI 221
SED G P K++VG +PY + FE GT+ + + DT + RG +
Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFV 159
Query: 222 SFKT-EXXXXXXXXXXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDI 280
+ T E + G L + + + R P + RIYVGNL D+
Sbjct: 160 TMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPER-QPRVYDAAFRIYVGNLPWDV 218
Query: 281 KEGELRKFFS-NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL-TLDQCVLLGRPV 338
G L + FS + + R D+ETG +G+ V + + A+ LD L GR +
Sbjct: 219 DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAI 278
Query: 339 RVSHA 343
+V+ A
Sbjct: 279 KVNVA 283
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 4/172 (2%)
Query: 175 TKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXX 233
K++VG + Y + FE GT+ + + +T + RG ++ + +
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 234 XXXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFFS-NC 292
+ G L + + + R AP E R+YVGNL D+ G L + FS +
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPER-APRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268
Query: 293 NITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALT-LDQCVLLGRPVRVSHA 343
+ R D+ETG +G+ V D L A++ LD L GR +RV+ A
Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 144 ENGSNNEPEMSEATELTKTNPSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITE 203
E ++ E E TE T+ N + K++V +P+ + +DI F CGT+
Sbjct: 72 ETSADEETSQEEKTEETQ--------NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNN 123
Query: 204 VDCLSFPDTGKFRGIALISFKT-EXXXXXXXXXXXXXMGGLFLKI---QPYKIQSQKSTR 259
V+ + D GK RG A ++ + E + G + + + +K + KS
Sbjct: 124 VEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPN 182
Query: 260 FAPETVEGYNR--IYVGNLSGDIKEGELRKFF--SNCNITSLRFGMDKETGEFKGYTHVD 315
P G R +YV NL+ + LR+ F ++ N S R G GY V
Sbjct: 183 DLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVS 242
Query: 316 FGDSQSLKTALT-LDQCVLLGRPVRVSHAV 344
F + + A+T L+ ++GRP+ + ++
Sbjct: 243 FATREEAENAITKLNGKEIMGRPITLKFSL 272
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 252 IQSQKSTRFAPET-----VEGYNRIYVGNLSGDIKEGELRKFFSNCN-ITSLRFGMDKET 305
+ ++KS+ P+T G ++ NLS +I+ ++ FF + +RF +++
Sbjct: 275 VDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDD 334
Query: 306 GEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRVSHA 343
G F+G+ HV+F S+ + AL LLGR +R+ A
Sbjct: 335 GSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIA 372
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 173 VPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXX 232
V K++V G+ + + D + F+ G I + C+ +G+ +G I FK+
Sbjct: 126 VHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
Query: 233 XXXXXXXMGGLFLKIQPYKIQSQK-------STRFAPETVEGYNRIYVGNLSGDIKEGEL 285
+G Q I + + F PE V+ +IYV N+S DI +L
Sbjct: 186 LKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQ--RKIYVSNVSADIDPQKL 243
Query: 286 RKFFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
+FFS I G+DK TG KG+ + +S K AL
Sbjct: 244 LEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 173 VPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXX 232
V K++V G+ + + D + F+ G I + C+ +G+ +G I FK+
Sbjct: 126 VHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
Query: 233 XXXXXXXMGGLFLKIQPYKIQSQK-------STRFAPETVEGYNRIYVGNLSGDIKEGEL 285
+G Q I + + F PE V+ +IYV N+S DI +L
Sbjct: 186 LKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQ--RKIYVSNVSADIDPQKL 243
Query: 286 RKFFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
+FFS I G+DK TG KG+ + +S K AL
Sbjct: 244 LEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 11/185 (5%)
Query: 168 EDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEX 227
+ GG T ++ G + Y DI ++F+ G + +V SF D G F+G I F +
Sbjct: 378 QTQGGSKT-LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPE 435
Query: 228 XXXXXXXXXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEG------YNRIYVGNLSGDIK 281
+ G +++ + EG Y R + +L D
Sbjct: 436 EAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEI 495
Query: 282 EGELRKFFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRV 340
+ ELR FS C +T + D+ETG +G+ ++D + AL L + G + V
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL--TSGFDEALQLSGSEIGGGNIHV 553
Query: 341 SHAVP 345
+ P
Sbjct: 554 EESRP 558
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 6/176 (3%)
Query: 171 GGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFK-TEXXX 229
V TK+Y G +PY + + V+ L DTG+ RG A ++ E
Sbjct: 81 AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCN 140
Query: 230 XXXXXXXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFF 289
G LK+ PET ++++VGNLS + L F
Sbjct: 141 IIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPET---EHKLFVGNLSWTVTSESLAGAF 197
Query: 290 SNC-NITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL-TLDQCVLLGRPVRVSHA 343
C ++ R D +TG +GY V + ++TAL +LD L GR +RV+ A
Sbjct: 198 RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ I +TE D+ +F G + +V + + + RGI + F
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALS 243
Query: 237 XXXMGGLFLKIQPYK-----IQSQKSTRFAPETVEGYN----RIYVGNLSGDIKEGELRK 287
+ G + ++P + +QS + A + Y+ R+YVGNL ++ E +LRK
Sbjct: 244 GQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRK 303
Query: 288 FFSNCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD-QCVLLGRPVRVS 341
F + L ETG KG+ V F + + AL L+ Q + GR ++VS
Sbjct: 304 VFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 358
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ I +TE D+ +F G + +V + + + RGI + F
Sbjct: 233 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALS 292
Query: 237 XXXMGGLFLKIQPYK-----IQSQKSTRFAPETVEGYN----RIYVGNLSGDIKEGELRK 287
+ G + ++P + +QS + A + Y+ R+YVGNL ++ E +LRK
Sbjct: 293 GQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRK 352
Query: 288 FFSNCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD-QCVLLGRPVRVS 341
F + L ETG KG+ V F + + AL L+ Q + GR ++VS
Sbjct: 353 VFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 407
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 175 TKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXX 233
T++ +P+ ST +DIRS FE G++ +++ +S + RG+ I + E
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIE-MSMHKKERNRGLVFIEMASPEEAATALK 152
Query: 234 XXXXXXMGGLFLKIQPYKIQSQKST--RFAPETVEGYNRIYVGNLSGDIKEGELRKFF-- 289
G LK+ K + +K+ R P V +N ++V NL+ + + L++FF
Sbjct: 153 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 211
Query: 290 SNCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLDQCV-LLGRPVRVSHAVPLKN 348
N+ S + GY V F + + AL Q LGRP+R++ +
Sbjct: 212 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 271
Query: 349 LKKK 352
L+ K
Sbjct: 272 LQAK 275
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ +P +TE D+ +F G + +V + ++ + +G+ I F
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF----YDVMSVPMA 225
Query: 237 XXXMGGLFLKIQPYKIQSQKSTRFAPE----TVEGYN----RIYVGNLSGDIKEGELRKF 288
G LFL QP ++ ++ + + TV G ++YVGNL ++ E +LR+
Sbjct: 226 IALSGQLFLG-QPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQI 284
Query: 289 FSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTA-LTLD-QCVLLGRPVRVS 341
F + ++ +D ETG+ KG+ + F + K A + L+ + + GR ++VS
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
>AT4G24270.1 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 |
chr4:12581765-12587293 REVERSE LENGTH=816
Length = 816
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 272 YVGNLSGDIKEGELRKFFSN-CNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLDQ 330
++ NLS +E ++RKFF + + S+R K+TG+ +G + DF D + L A+ ++
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 331 CVLLGRPVRVSHAVPLKNLKKKTDEEPGSTGNTK 364
+ G+ + ++ + P K K+ T +GN+K
Sbjct: 714 KMFFGKKISIARSNPKKGKKEFTRRGNDGSGNSK 747
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 175 TKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXX 233
T++ +P+ ST +DIRS FE G++ +++ +S + RG+ I + E
Sbjct: 34 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIE-MSMHKKERNRGLVFIEMASPEEAATALK 92
Query: 234 XXXXXXMGGLFLKIQPYKIQSQKST--RFAPETVEGYNRIYVGNLSGDIKEGELRKFF-- 289
G LK+ K + +K+ R P V +N ++V NL+ + + L++FF
Sbjct: 93 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 151
Query: 290 SNCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLDQCV-LLGRPVRVSHAVPLKN 348
N+ S + GY V F + + AL Q LGRP+R++ +
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211
Query: 349 LKKK 352
L+ K
Sbjct: 212 LQAK 215
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 13/183 (7%)
Query: 174 PTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXX 232
P ++YV IP + F+ GT+ V+ P TG+ RG ++ +
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 233 XXXXXXXMGGLFLKIQPYKIQSQKSTRFAPETV----------EGYNRIYVGNLSGDIKE 282
+GG ++++ Y + TR PE + E +++YVGNL +
Sbjct: 167 ASLDGTEVGGREMRVR-YSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 225
Query: 283 GELRKFFSNC-NITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRVS 341
LR FS I S R D++TG + + + F + AL+ + GR + V
Sbjct: 226 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
Query: 342 HAV 344
+
Sbjct: 286 EGI 288