Miyakogusa Predicted Gene

Lj5g3v2263950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2263950.1 tr|A9T9J7|A9T9J7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,46.9,3e-17,G-patch,G-patch domain; coiled-coil,NULL; glycine
rich nucleic binding domain,G-patch domain; seg,NU,CUFF.57122.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08535.1 | Symbols:  | D111/G-patch domain-containing protein...    76   5e-15
AT5G08535.2 | Symbols:  | D111/G-patch domain-containing protein...    76   6e-15
AT3G52350.1 | Symbols:  | D111/G-patch domain-containing protein...    76   7e-15
AT5G26610.3 | Symbols:  | D111/G-patch domain-containing protein...    51   2e-07
AT5G26610.2 | Symbols:  | D111/G-patch domain-containing protein...    51   2e-07
AT5G26610.1 | Symbols:  | D111/G-patch domain-containing protein...    51   2e-07

>AT5G08535.1 | Symbols:  | D111/G-patch domain-containing protein
          | chr5:2762455-2763320 FORWARD LENGTH=141
          Length = 141

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 18 INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAV 71
          INSSNIGFQLLKK GWKEGTGLGI+EQG L P++   K+NKRG+GA +  K  V
Sbjct: 39 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGAKQPAKRKV 92


>AT5G08535.2 | Symbols:  | D111/G-patch domain-containing protein
          | chr5:2762722-2763320 FORWARD LENGTH=116
          Length = 116

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 18 INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAV 71
          INSSNIGFQLLKK GWKEGTGLGI+EQG L P++   K+NKRG+GA +  K  V
Sbjct: 14 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGAKQPAKRKV 67


>AT3G52350.1 | Symbols:  | D111/G-patch domain-containing protein |
           chr3:19409606-19410148 REVERSE LENGTH=180
          Length = 180

 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%)

Query: 3   DMSGGSXXXXXXXXXINSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           ++ G S         I+SSNIGFQLLKK GWKEGTGLGI+EQG L P++   K+NK+GLG
Sbjct: 62  NVIGDSSESSNPSTAISSSNIGFQLLKKHGWKEGTGLGITEQGILVPLQAEPKHNKQGLG 121

Query: 63  ADKVKK 68
           A+K  K
Sbjct: 122 AEKPAK 127


>AT5G26610.3 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:9375456-9376991 FORWARD LENGTH=301
          Length = 301

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           I+SSN+GF+LL+K GWK G GLG  EQG  EP+++ +++ + GLG
Sbjct: 64  ISSSNVGFRLLQKMGWK-GKGLGKQEQGITEPIKSGIRDRRLGLG 107


>AT5G26610.2 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:9375456-9376991 FORWARD LENGTH=301
          Length = 301

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           I+SSN+GF+LL+K GWK G GLG  EQG  EP+++ +++ + GLG
Sbjct: 64  ISSSNVGFRLLQKMGWK-GKGLGKQEQGITEPIKSGIRDRRLGLG 107


>AT5G26610.1 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:9375456-9376991 FORWARD LENGTH=301
          Length = 301

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           I+SSN+GF+LL+K GWK G GLG  EQG  EP+++ +++ + GLG
Sbjct: 64  ISSSNVGFRLLQKMGWK-GKGLGKQEQGITEPIKSGIRDRRLGLG 107