Miyakogusa Predicted Gene

Lj5g3v2263940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2263940.1 Non Chatacterized Hit- tr|A9P058|A9P058_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,36.17,1e-18,seg,NULL,CUFF.57121.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31840.1 | Symbols:  | Thioredoxin superfamily protein | chr2...   313   1e-85
AT4G28590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   117   9e-27

>AT2G31840.1 | Symbols:  | Thioredoxin superfamily protein |
           chr2:13538003-13539602 REVERSE LENGTH=350
          Length = 350

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/235 (64%), Positives = 183/235 (77%), Gaps = 6/235 (2%)

Query: 110 ERQEWRRKIRQVMDMKPNVQE--ESDPXXXXXXXXXXXXDYPLVVDEEDPNWPEDADGWG 167
           ER+EWR+ IR+V+D  P+++E  E D             DYPLVV+EEDPNWPEDADGWG
Sbjct: 109 ERREWRKTIREVIDKHPDIEEDEEIDMVEKRRKMQKLLADYPLVVNEEDPNWPEDADGWG 168

Query: 168 FSLGQFFNKITIXXXXXXXXXXXXXXEG----NKVVWQDDDYIRPIKDIKSSEWEETVFK 223
           FS  QFFNKITI              EG     ++VWQDD+YIRPIKD+ ++EWEE VFK
Sbjct: 169 FSFNQFFNKITIKNEKKEEEDDDEDSEGDDSEKEIVWQDDNYIRPIKDLTTAEWEEAVFK 228

Query: 224 DISPLIILVHNRYRRPKENERIRDELEKAVHIIWNCRLPSPRCVALDAVVETELVAALKV 283
           DISPL++LVHNRY+RPKENE+ R+ELEKA+ +IWNC LPSPRCVA+DAVVET+LV+ALKV
Sbjct: 229 DISPLMVLVHNRYKRPKENEKFREELEKAIQVIWNCGLPSPRCVAVDAVVETDLVSALKV 288

Query: 284 SVFPEMIFTKSGKILFRDKAIRNADELSKIMAYFYFGAAKPPCLNSFTDFQEDIP 338
           SVFPE+IFTK+GKIL+R+K IR ADELSKIMA+FY+GAAKPPCLN   + QE IP
Sbjct: 289 SVFPEIIFTKAGKILYREKGIRTADELSKIMAFFYYGAAKPPCLNGVVNSQEQIP 343


>AT4G28590.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 21 plant structures;
           EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
           thaliana protein match is: Thioredoxin superfamily
           protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112
           proteins in 39 species: Archae - 2; Bacteria - 0;
           Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other
           Eukaryotes - 22 (source: NCBI BLink). |
           chr4:14125367-14126828 REVERSE LENGTH=331
          Length = 331

 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 101/176 (57%), Gaps = 13/176 (7%)

Query: 156 DPNWPEDAD-GWGFSLGQFFNKITIXXXXXXXXXXXXXXEGNKVVWQDDDYIRPIKDIKS 214
           DP+WP D D GWG    ++F+   I              +G+++ W+ +     +K+I  
Sbjct: 158 DPDWPVDTDVGWGIKASEYFDTHPIKNVVGD--------DGSEIDWEGEIDDSWVKEINC 209

Query: 215 SEWEETVFKDISPLIILVHNRYRRPKENERIRDELEKAVHIIWNC--RLPSPRCVALDAV 272
            EWE   F   SPL++LV  RY+R  +N +   ELEKA+ + W+   RLP PR V +D  
Sbjct: 210 LEWESFAFHP-SPLVVLVFERYKRASDNWKTLKELEKAIKVYWDAKDRLP-PRAVKIDLN 267

Query: 273 VETELVAALKVSVFPEMIFTKSGKILFRDKAIRNADELSKIMAYFYFGAAKPPCLN 328
           +ET+L  ALK    P+++F +  +IL+R+K  R ADEL  ++A+FY+ A +P C++
Sbjct: 268 IETDLAYALKAKECPQILFLRGNRILYREKDFRTADELVHMIAHFYYKAKRPSCVD 323