Miyakogusa Predicted Gene
- Lj5g3v2263880.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2263880.2 Non Chatacterized Hit- tr|I1HS90|I1HS90_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,54.43,3e-16,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; DEAD-like helicases superfamily,H,CUFF.57306.2
(756 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 632 0.0
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 568 e-162
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 471 e-133
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 471 e-133
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 471 e-132
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 424 e-118
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 401 e-112
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 300 2e-81
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 212 1e-54
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 202 9e-52
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 195 9e-50
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 132 9e-31
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 124 2e-28
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 119 1e-26
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 83 9e-16
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 82 2e-15
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 82 2e-15
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 80 7e-15
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 78 2e-14
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 78 2e-14
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 78 3e-14
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 78 3e-14
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 78 3e-14
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 77 3e-14
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 77 3e-14
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 75 1e-13
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 75 2e-13
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 75 2e-13
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 75 2e-13
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 73 9e-13
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 70 4e-12
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 70 7e-12
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 69 2e-11
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 68 2e-11
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 65 2e-10
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 64 3e-10
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 60 5e-09
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 60 6e-09
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 60 6e-09
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 60 6e-09
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 60 7e-09
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 57 6e-08
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 54 3e-07
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 54 3e-07
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 54 4e-07
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 54 4e-07
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 54 4e-07
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 54 4e-07
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/618 (57%), Positives = 420/618 (67%), Gaps = 42/618 (6%)
Query: 147 HPSYLTHNGSASQPQTVSSRVFNNS-ADYERLSSQQAIKRTLPPAFQSSATRALRSSSFG 205
H +++ NGS V+SR+ N S DYE+ SSQQA KRT PP T +
Sbjct: 79 HHTHIPGNGS-----IVTSRIPNISVGDYEKFSSQQAFKRTHPP------TFSRPPFPPR 127
Query: 206 PDSRLSNLKMLDNISS-RPSTSSDKGYIRVNLRGPDEDRFMHQNGGIRNLPSSMMLGKAI 264
PD SN N S R D G RV G R LP S+ G +
Sbjct: 128 PDIGTSN----GNASHFRGGAHDDLGMGRVT-------------NGTRILPPSVAHGTSA 170
Query: 265 NPL-FASSSEPPNRSGGVDERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVSLMR 323
+P F S+P +R+G +ER+ DERLI++AAL++L+Q + E DLPAG++SV LM+
Sbjct: 171 SPSHFNGLSDPMHRNGIGEERNSENDERLIYQAALQELNQ--PKSEVDLPAGLLSVPLMK 228
Query: 324 HQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGNHKA 383
HQKIALAWM QKET SLHC+GGILADDQGLGKT+S ALIL Q ++K K+ ++GN +A
Sbjct: 229 HQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMH-EAKLKSKNSGNQEA 287
Query: 384 EALNLXXXXXXXXXXXXKLEKIEEVQKLEKIEEFDDVKPILEXXXXXXXXXXXXXXXGTL 443
EAL+L K + K E GTL
Sbjct: 288 EALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKG-EEASTSTRKFNRKRPAAGTL 346
Query: 444 VVCPASVLRQWARELDEKVGDE-KLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVP 502
+VCPASV+RQWARELDEKV DE KLSVL+YHGGNRTKD ELAK+DVV+TTYA+V+NEVP
Sbjct: 347 IVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVP 406
Query: 503 KQPLVDE-EDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCG---SGPL 558
KQPLVD+ E+DEKN+EK+G++ F +++ D SG L
Sbjct: 407 KQPLVDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTL 466
Query: 559 ARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYD 618
A+VGWFRV+LDEAQTIKNHRTQVARACC LRAKRRWCLSGTPIQNTIDDLYSYFRFLKYD
Sbjct: 467 AKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYD 526
Query: 619 PYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLT 678
PYAVYKSF + IK PISRNS+ GYKKLQAVLRAIMLRRTKGTL+DG+PI++LPPKTI L+
Sbjct: 527 PYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLS 586
Query: 679 KVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYN 738
+VDFS+EERSFY KLE+DSRSQFKAYAAAGT+NQNYANILLMLLRLRQACDHP+LVK YN
Sbjct: 587 QVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYN 646
Query: 739 SNSNPVGKDSVEMAKTLP 756
S+S VGK S E K LP
Sbjct: 647 SDS--VGKVSEEAVKKLP 662
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 350/706 (49%), Positives = 439/706 (62%), Gaps = 83/706 (11%)
Query: 119 VYNHSQVKPHTKPVPSRSTPNHGVAGTGHPSY---LTHNGSASQPQTVSSRVFNNS-ADY 174
V +H++ + HT P PN + T P T NG+ TV+SR+ + S ADY
Sbjct: 43 VDSHARAE-HTNQAP----PNGASSDTSRPGVSKPFTGNGN-----TVNSRISSGSGADY 92
Query: 175 ERLSSQQAIKRTL------PPAFQSSATRALRSSS---FGPDSR--LSNLKM-------- 215
RLSS+QA+KRTL PP S T + ++S G D LS +
Sbjct: 93 VRLSSEQALKRTLPPSFNSPPLPARSGTNNISNASGSRVGVDYERPLSQQALKRTLPPSF 152
Query: 216 ----------LDNISSRPST--SSDKGYIRVNLRGPDEDRFMHQNG------------GI 251
+NI + + +D + V+ G H +G G+
Sbjct: 153 NPPPLPSRSGTNNIRNAGGSRFGADYSHPAVSAVGNKSTFGDHYSGAHAEIGIQRGVNGV 212
Query: 252 RNLPSSMMLGKAINPLF-ASSSEPPNRSGGVDERDPGTDERLIFEAALEDLHQFQHRKET 310
R LP S+ G + + L A SS+P +R GG ++R+P DERL+++AAL+ L+Q E+
Sbjct: 213 RILPPSLTHGTSASVLHHAGSSDPMHRFGGGEDRNPDNDERLVYQAALQVLNQPM--TES 270
Query: 311 DLPAGIMSVSLMRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQ 370
DLP G +SV LMRHQKIALAWM QKET S +C GGILADDQGLGKT+S ALIL Q+ +
Sbjct: 271 DLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALILKQK-IV 329
Query: 371 SKWKADDTGNHKAEAL---------NLXXXXXXXXXXXXKLEKIEEVQKLEKIEEFDDVK 421
S+ K++ + + EAL N K+ E L ++
Sbjct: 330 SQLKSESSCKQETEALVLDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDS 389
Query: 422 PILEXXXXXXXXXXXXX------XXGTLVVCPASVLRQWARELDEKVGDE-KLSVLVYHG 474
+E GTL+VCPASV+RQWARELDEKV +E KLSVLVYHG
Sbjct: 390 SDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHG 449
Query: 475 GNRTKDHFELAKFDVVLTTYALVTNEVPKQPLVDE-EDDEKNAEKFGVSPEFFXXXXXXX 533
NRTKD ELA++DVV+TTYA+VTNE P + LVDE E+DEKN +++G++ F
Sbjct: 450 SNRTKDPNELAEYDVVVTTYAIVTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKV 509
Query: 534 XXXXXXXXX---XXXXIDSSFDCGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRA 590
D+S + GPL +VGWFR++LDEAQTIKN+RTQ+AR+CC+LRA
Sbjct: 510 VVGASKKSKRRGRKSTNDTSSEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRA 569
Query: 591 KRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLR 650
KRRWCLSGTPIQNTIDDLYSYFRFL+YDPYAVYKSF +TIKVPISRNS GYKKLQAVLR
Sbjct: 570 KRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLR 629
Query: 651 AIMLRRTKGTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTV 710
AIMLRRTKGTL+DGKPI++LPPK + L++VDFS+ ERSFYKKLEADSRSQFKAYA AGT+
Sbjct: 630 AIMLRRTKGTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTL 689
Query: 711 NQNYANILLMLLRLRQACDHPRLVKDYNSNSNPVGKDSVEMAKTLP 756
+QNYANILL+LLRLRQACDHP+LVK Y NS+PVGK S + LP
Sbjct: 690 SQNYANILLLLLRLRQACDHPQLVKRY--NSDPVGKVSEAAVRRLP 733
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/491 (52%), Positives = 322/491 (65%), Gaps = 28/491 (5%)
Query: 268 FASSSEPPNRSGGVDERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVSLMRHQKI 327
+++ S N+SGG+ + E +IF+AAL+DL Q E LP G+++V L+RHQ+I
Sbjct: 349 YSTVSHNFNQSGGLKLQ--SNKENMIFQAALQDLTQ--PNSEAILPDGVLTVPLLRHQRI 404
Query: 328 ALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGNHKAEALN 387
AL+WM QKET C GGILADDQGLGKT+S ALIL +R ++ + T K E +
Sbjct: 405 ALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEEST---KKEIFD 461
Query: 388 LXXXXXXXX--XXXXKLEKIEEVQKLEKIEEF--DDVKPILEXXXXXXXXXXXXXXXGTL 443
L + + E Q L + D V + GTL
Sbjct: 462 LESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKV-----------TGRPAAGTL 510
Query: 444 VVCPASVLRQWARELDEKVGDE-KLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVP 502
VVCP SV+RQWA EL +KV E LSVLVYHG +RTKD ELAK+DVV+TT+++V+ EVP
Sbjct: 511 VVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVP 570
Query: 503 KQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLARVG 562
KQPLVD+ED+EK+ G + F SGPLA+V
Sbjct: 571 KQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEF--LSGPLAKVS 628
Query: 563 WFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAV 622
WFRV+LDEAQ+IKN++TQVARAC LRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPY+
Sbjct: 629 WFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSS 688
Query: 623 YKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTKVDF 682
Y F +TIK PI+RN V GY+KLQA+L+ +MLRRTKG+L+DGKPI+ LPPK+I+L KVDF
Sbjct: 689 YVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDF 748
Query: 683 SIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYNSNSN 742
++EER FY KLEA+SR+QF+ YA AGTV QNY NILLMLLRLRQACDHP LV N +
Sbjct: 749 TVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLV---NGEYS 805
Query: 743 PVGKDSVEMAK 753
+ SV +AK
Sbjct: 806 FTWESSVGLAK 816
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/483 (53%), Positives = 318/483 (65%), Gaps = 28/483 (5%)
Query: 276 NRSGGVDERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVSLMRHQKIALAWMLQK 335
N+SGG+ + E +IF+AAL+DL Q E LP G+++V L+RHQ+IAL+WM QK
Sbjct: 522 NQSGGLKLQ--SNKENMIFQAALQDLTQ--PNSEAILPDGVLTVPLLRHQRIALSWMAQK 577
Query: 336 ETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGNHKAEALNLXXXXXXX 395
ET C GGILADDQGLGKT+S ALIL +R ++ + T K E +L
Sbjct: 578 ETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEEST---KKEIFDLESETGEC 634
Query: 396 X--XXXXKLEKIEEVQKLEKIEEF--DDVKPILEXXXXXXXXXXXXXXXGTLVVCPASVL 451
+ + E Q L + D V + GTLVVCP SV+
Sbjct: 635 APLKPSGRSKHFEHSQLLSNENKVGGDSVGKV-----------TGRPAAGTLVVCPTSVM 683
Query: 452 RQWARELDEKVGDE-KLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVPKQPLVDEE 510
RQWA EL +KV E LSVLVYHG +RTKD ELAK+DVV+TT+++V+ EVPKQPLVD+E
Sbjct: 684 RQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQPLVDDE 743
Query: 511 DDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLARVGWFRVILDE 570
D+EK+ G + F SGPLA+V WFRV+LDE
Sbjct: 744 DEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEF--LSGPLAKVSWFRVVLDE 801
Query: 571 AQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFLNTI 630
AQ+IKN++TQVARAC LRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPY+ Y F +TI
Sbjct: 802 AQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTI 861
Query: 631 KVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTKVDFSIEERSFY 690
K PI+RN V GY+KLQA+L+ +MLRRTKG+L+DGKPI+ LPPK+I+L KVDF++EER FY
Sbjct: 862 KNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFY 921
Query: 691 KKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYNSNSNPVGKDSVE 750
KLEA+SR+QF+ YA AGTV QNY NILLMLLRLRQACDHP LV N + + SV
Sbjct: 922 SKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLV---NGEYSFTWESSVG 978
Query: 751 MAK 753
+AK
Sbjct: 979 LAK 981
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 253/472 (53%), Positives = 314/472 (66%), Gaps = 25/472 (5%)
Query: 268 FASSSEPPNRSGGVDERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVSLMRHQKI 327
+++ S N+SGG+ + E +IF+AAL+DL Q E LP G+++V L+RHQ+I
Sbjct: 507 YSTVSHNFNQSGGLKLQ--SNKENMIFQAALQDLTQ--PNSEAILPDGVLTVPLLRHQRI 562
Query: 328 ALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGNHKAEALN 387
AL+WM QKET C GGILADDQGLGKT+S ALIL +R ++ + T K E +
Sbjct: 563 ALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEEST---KKEIFD 619
Query: 388 LXXXXXXXX--XXXXKLEKIEEVQKLEKIEEF--DDVKPILEXXXXXXXXXXXXXXXGTL 443
L + + E Q L + D V + GTL
Sbjct: 620 LESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKV-----------TGRPAAGTL 668
Query: 444 VVCPASVLRQWARELDEKVGDE-KLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVP 502
VVCP SV+RQWA EL +KV E LSVLVYHG +RTKD ELAK+DVV+TT+++V+ EVP
Sbjct: 669 VVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVP 728
Query: 503 KQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLARVG 562
KQPLVD+ED+EK+ G + F SGPLA+V
Sbjct: 729 KQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEF--LSGPLAKVS 786
Query: 563 WFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAV 622
WFRV+LDEAQ+IKN++TQVARAC LRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPY+
Sbjct: 787 WFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSS 846
Query: 623 YKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTKVDF 682
Y F +TIK PI+RN V GY+KLQA+L+ +MLRRTKG+L+DGKPI+ LPPK+I+L KVDF
Sbjct: 847 YVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDF 906
Query: 683 SIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLV 734
++EER FY KLEA+SR+QF+ YA AGTV QNY NILLMLLRLRQACDHP LV
Sbjct: 907 TVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLV 958
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/474 (50%), Positives = 293/474 (61%), Gaps = 42/474 (8%)
Query: 266 PLFAS----SSEPPNRSGGVD-ERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVS 320
P+F+S S+ N GG+ E + G + F A L+DL Q H E P G+++VS
Sbjct: 486 PVFSSEHSTGSQTLNNCGGLKFESNKGN---MNFHADLQDLSQ--HSSEASPPDGVLAVS 540
Query: 321 LMRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGN 380
L+RHQ+IAL+WM QKET C GGILADDQGLGKT+S ALIL +R +D+ N
Sbjct: 541 LLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKN 600
Query: 381 HKAEALNLXXXXXXXXXXXXKLEKIEEVQKLEKIEEFDDVKPILEXXXXXXXXXXXXXXX 440
+ + + V K+ E K
Sbjct: 601 GGCN----------------QSDHSQVVFNENKVVEDSLCK------------MRGRPAA 632
Query: 441 GTLVVCPASVLRQWARELDEKVGDEK-LSVLVYHGGNRTKDHFELAKFDVVLTTYALVTN 499
GTL+VCP S++RQWA EL +KV E LSVLVYHG +RTKD ELAK+DVV+TTY+LV+
Sbjct: 633 GTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSV 692
Query: 500 EVPKQPLVDEEDDEKNA-EKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSS-FDCGSGP 557
EVPKQP D D+EK GV F +D + SGP
Sbjct: 693 EVPKQPR-DRADEEKGGIHDGGVESVGFGSNKKDLPNSQKKGTKKRKHMDCEPVEFLSGP 751
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
LA+V WFRV+LDEAQ+IKN++TQ + AC L AKRRWCLSGTPIQN+I DLYSYFRFLKY
Sbjct: 752 LAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKY 811
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
DPY+ Y++F TIK PIS GYK LQA+L+ +MLRRTK TL+DGKP++ LPPK+I+L
Sbjct: 812 DPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIEL 871
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
+VDF+ EER FY KLE DSR QFK YA AGTV QNY NILLMLLRLRQAC HP
Sbjct: 872 RRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 925
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/472 (48%), Positives = 283/472 (59%), Gaps = 82/472 (17%)
Query: 266 PLFAS----SSEPPNRSGGVD-ERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVS 320
P+F+S S+ N GG+ E + G + F A L+DL Q H E P G+++VS
Sbjct: 487 PVFSSEHSTGSQTLNNCGGLKFESNKGN---MNFHADLQDLSQ--HSSEASPPDGVLAVS 541
Query: 321 LMRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGN 380
L+RHQ+IAL+WM QKET C GGILADDQGLGKT+S ALIL +R +D+ N
Sbjct: 542 LLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKN 601
Query: 381 HKAEALNLXXXXXXXXXXXXKLEKIEEVQKLEKIEEFDDVKPILEXXXXXXXXXXXXXXX 440
+ + + V K+ E K
Sbjct: 602 GGCN----------------QSDHSQVVFNENKVVEDSLCK------------MRGRPAA 633
Query: 441 GTLVVCPASVLRQWARELDEKVGDEK-LSVLVYHGGNRTKDHFELAKFDVVLTTYALVTN 499
GTL+VCP S++RQWA EL +KV E LSVLVYHG +RTKD ELAK+DVV+TTY+LV+
Sbjct: 634 GTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVS- 692
Query: 500 EVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLA 559
K+ +D E EF SGPLA
Sbjct: 693 ---KRKHMDCE-----------PVEFL----------------------------SGPLA 710
Query: 560 RVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDP 619
+V WFRV+LDEAQ+IKN++TQ + AC L AKRRWCLSGTPIQN+I DLYSYFRFLKYDP
Sbjct: 711 QVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDP 770
Query: 620 YAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTK 679
Y+ Y++F TIK PIS GYK LQA+L+ +MLRRTK TL+DGKP++ LPPK+I+L +
Sbjct: 771 YSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRR 830
Query: 680 VDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
VDF+ EER FY KLE DSR QFK YA AGTV QNY NILLMLLRLRQAC HP
Sbjct: 831 VDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 882
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 201/314 (64%), Gaps = 55/314 (17%)
Query: 441 GTLVVCPASVLRQWARELDEKVGDE-KLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTN 499
GTL+VCPASV++QWARE+ EKV DE KLSVLV+HG +RTKD E+A +DVV+TTYA+VTN
Sbjct: 116 GTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTN 175
Query: 500 EVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLA 559
EVP+ P+++ D + E S S G L
Sbjct: 176 EVPQNPMLNRYDSMRGRESLDGS--------------------------SLIQPHVGALG 209
Query: 560 RVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDP 619
RV W RV+LDEA TIKNHRT +A+AC SLRAKRRWCL+GTPI+N +DDLYSYFRFL+Y P
Sbjct: 210 RVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHP 269
Query: 620 YAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTK 679
YA+ SF IK PI + +HGYKKLQA+LR IMLRRTK
Sbjct: 270 YAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK--------------------- 308
Query: 680 VDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDY-N 738
E SFY+KLE +SR +F+ YAA GT++++ A +L+MLLRLRQAC+HP+LV Y +
Sbjct: 309 ------EWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSH 362
Query: 739 SNSNPVGKDSVEMA 752
S++ D V +A
Sbjct: 363 SDTTRKMSDGVRVA 376
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 73/103 (70%), Gaps = 6/103 (5%)
Query: 281 VDERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVSLMRHQKIALAWMLQKETKSL 340
V E +ER+I++AAL+DL Q + E DLP G+++V LMRHQKIAL WM +KE +S
Sbjct: 15 VQEEKTTVNERVIYQAALQDLKQ--PKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSR 72
Query: 341 HCLGGILADDQGLGKTISMTALILMQR----QLQSKWKADDTG 379
HCLGGILADDQGLGKTIS +LIL+Q+ Q K K ++G
Sbjct: 73 HCLGGILADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNSG 115
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 192/396 (48%), Gaps = 75/396 (18%)
Query: 344 GGILADDQGLGKTISMTALILMQRQLQSKWKADDTG----NHKAEALNLXXXXXXXXXXX 399
GGILAD GLGKT+ +L+L WKA TG N++ + +
Sbjct: 414 GGILADAMGLGKTVMTISLLLAH-----SWKAASTGFLCPNYEGDKVISSSVDDLTSPPV 468
Query: 400 XKLEKIEEVQKLEKIEEFDDVKPILEXXXXXXXXXXXXXXXGTLVVCPASVLRQWARELD 459
K K FD K +LE G L+VCP ++L QW E++
Sbjct: 469 ----------KATKFLGFD--KRLLEQKSVLQNG-------GNLIVCPMTLLGQWKTEIE 509
Query: 460 EKVGDEKLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVPKQPLVDEEDDEKNAEKF 519
LSV V++G +R KD L++ DVV+TTY ++T+E ++ D E
Sbjct: 510 MHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHEG-------- 561
Query: 520 GVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLARVGWFRVILDEAQTIKNHRT 579
+ V WFR++LDEA TIKN ++
Sbjct: 562 --------------------------------------IYAVRWFRIVLDEAHTIKNSKS 583
Query: 580 QVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFLNTIKVPISRNSV 639
Q++ A +L A RRWCL+GTPIQN ++DLYS RFL+ +P+ + + ++ P
Sbjct: 584 QISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDE 643
Query: 640 HGYKKLQAVLRAIMLRRTK-GTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSR 698
G K +Q++L+ IMLRRTK T +G+PI+ LPP ++ + S ER FY L S+
Sbjct: 644 RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSK 703
Query: 699 SQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLV 734
+F + G V NYA+IL +LLRLRQ CDHP LV
Sbjct: 704 VKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLV 739
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 157/295 (53%), Gaps = 49/295 (16%)
Query: 441 GTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNE 500
GTL++CP ++L QW EL+ + +SVLVY+GG+RT D +A DVVLTTY ++T+
Sbjct: 742 GTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSA 801
Query: 501 VPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLAR 560
+ D + R
Sbjct: 802 YKQ------------------------------------------------DMANSIFHR 813
Query: 561 VGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPY 620
+ W+R++LDEA TIK+ +TQ A+A L + RWCL+GTP+QN ++DLYS FL +P+
Sbjct: 814 IDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPW 873
Query: 621 AVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTL-IDGKPIVDLPPKTIQLTK 679
+ + I+ P G K ++A+LR +MLRRTK T +G I++LPP +Q+ +
Sbjct: 874 CNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIE 933
Query: 680 VDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLV 734
+ S ER FY L S+ QF + A G V NYANIL +LLRLRQ C+HP LV
Sbjct: 934 CEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLV 988
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 133/463 (28%), Positives = 204/463 (44%), Gaps = 99/463 (21%)
Query: 293 IFEAALEDLHQFQHRKETDLPAGIMSVSLMRHQKIALAWMLQKETKS------------- 339
IF+ E++ + P ++ L HQK L W+L +E
Sbjct: 184 IFKLVDENVKLMGKLVAAEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEF 243
Query: 340 LHCL-------------GGILADDQGLGKTISMTALILMQRQLQSKWKADDTGNHKAEAL 386
L+ L GG+ ADD GLGKT+++ +LI R + T E L
Sbjct: 244 LNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDR-----YGNASTSTPTEEPL 298
Query: 387 NLXXXXXXXXXXXXKLEKIEEVQKLEKIEEFDDVKPILEXXXXXXXXXXXXXXXGTLVVC 446
+ K E +K++ DDV TL+VC
Sbjct: 299 DGEGDKIEKKGKKRGRGKSSESVTRKKLKT-DDV------------VGMNVSQKTTLIVC 345
Query: 447 PASVLRQWARELDEKVGDEKLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVPKQPL 506
P SV+ W +L+E L V +YHGG RT D EL K+D+VLTTY +
Sbjct: 346 PPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLA-------- 397
Query: 507 VDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLARVGWFRV 566
++ S++ P+ ++ W R+
Sbjct: 398 ----------------------------------------VEESWE--DSPVKKMEWLRI 415
Query: 567 ILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSF 626
ILDEA TIKN Q +R C L+A RRW ++GTPIQN DLYS FL+++P+++ +
Sbjct: 416 ILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYW 475
Query: 627 LNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTKVDFSIEE 686
+ I+ P+ + + G +LQ ++ I LRRTK K ++ LPPKT++ V+ S EE
Sbjct: 476 QSLIQRPLGQGNKKGLSRLQVLMATISLRRTK-----EKSLIGLPPKTVETCYVELSPEE 530
Query: 687 RSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACD 729
R Y +E +++ + G++ +NY+ +L ++LRLRQ CD
Sbjct: 531 RQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCD 573
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 140/313 (44%), Gaps = 60/313 (19%)
Query: 442 TLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEV 501
TLV+ P L QW E+ VL YHG R K+ +L +D VLTT +V NE
Sbjct: 192 TLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPIVENEY 251
Query: 502 PKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGSGPLARV 561
K VDE PL +
Sbjct: 252 RKDEGVDET--------------------------------------------MSPLHSI 267
Query: 562 GWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSY--FRFLKYDP 619
W R+I+DEA IKN ++ A+A +L A RW LSGTP+QN +D+LYS + FL +
Sbjct: 268 KWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNF-F 326
Query: 620 YAVYKSF-LNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLT 678
Y+ Y SF + +RN ++ ++ +L + I+ P V + L
Sbjct: 327 YSTYASFAFRHTHITFARNVT-----VKFLIGGNILPLSIPVRIENVPAVLIMQINTSLG 381
Query: 679 ---KVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK 735
+ S+ E FY+ L S++ F Y AGT+ NYA+I +L+RLRQA DHP LV
Sbjct: 382 GKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLV- 440
Query: 736 DYNSNSNPVGKDS 748
S S+P G ++
Sbjct: 441 ---SYSSPSGANA 450
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 115/232 (49%), Gaps = 43/232 (18%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L V W R+ILDEA IK R+ ARA +L A RW LSGTP+QN + +LYS RFL+
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 618 DPYAVY--------------------------KSFL---NTIKVPISRNSVHGYKKL--- 645
PY+ Y + F + PI+ G K
Sbjct: 409 RPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRAMI 468
Query: 646 ---QAVLRAIMLRRTK-GTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQF 701
VL+ I+LRRTK G D + LPP+ I L + ++E +Y+ L +S+++F
Sbjct: 469 LLKHKVLKDILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEF 524
Query: 702 KAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYNS---NSNPVGKDSVE 750
Y AGT+ NYA+I +L RLRQA DHP LV NS N+N V ++ E
Sbjct: 525 NTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANANLVDENKSE 576
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 442 TLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNE 500
TLV+CP + QW E+ VLVYHG R K+ E +D VLTTY+ V +E
Sbjct: 196 TLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESE 254
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 56/316 (17%)
Query: 441 GTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTK-------DHFELAKFDVVLTT 493
TL+VCPA +L QW E+ L +Y G D EL D+VLTT
Sbjct: 501 ATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTT 560
Query: 494 YALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDC 553
Y ++ ++ D D +++ +F +
Sbjct: 561 YDVLKEDLTHD--FDRHDGDRHCLRF----------------------------QKRYPV 590
Query: 554 GSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFR 613
PL R+ W+R+ LDEAQ ++++ L K RWC++GTPIQ +DDL+ +
Sbjct: 591 IPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLK 650
Query: 614 FLKYDPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPK 673
FLK +P+ V + ++ I+ P R + + +M R +K + D + LPP+
Sbjct: 651 FLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADE---LQLPPQ 707
Query: 674 TIQLTKVDFSIEERSFYKK------------LEADSRSQFKAYAAAG----TVNQNYANI 717
++ + FS E FY + +E R K + + A +
Sbjct: 708 EECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKL 767
Query: 718 LLMLLRLRQACDHPRL 733
L LL+LRQAC HP++
Sbjct: 768 LNSLLKLRQACCHPQV 783
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 124/306 (40%), Gaps = 77/306 (25%)
Query: 443 LVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTK--------DHFELAKFDVVLTTY 494
LV+CP SV W E++ + L VL Y G + DH FDV+LTTY
Sbjct: 105 LVLCPLSVTDGWVSEINRFTPN--LEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTY 162
Query: 495 ALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCG 554
+ LVD++
Sbjct: 163 DIA--------LVDQD-------------------------------------------- 170
Query: 555 SGPLARVGWFRVILDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNTIDDLYSYFR 613
L+++ W I+DEAQ +KN + + RR ++GTPIQN + +L++
Sbjct: 171 --FLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMH 228
Query: 614 FLKYDPYAVYKSFLNTIK-----VPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIV 668
F + FL+ K + +S N YK L+ +L A MLRRTK LI+ +V
Sbjct: 229 FCMPLVFGTLDQFLSAFKETGDGLDVS-NDKETYKSLKFILGAFMLRRTKSLLIESGNLV 287
Query: 669 DLPPKTIQLTKVDFSIEERSFYKKLEADS-RSQFKAYAAAGTVNQNYANILLMLLRLRQA 727
LPP LT++ + S KK+ R + + N+ ++ ++++LR+A
Sbjct: 288 -LPP----LTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKA 342
Query: 728 CDHPRL 733
C HP L
Sbjct: 343 CSHPYL 348
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 122/305 (40%), Gaps = 85/305 (27%)
Query: 443 LVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKD-------HF---ELAKFDVVLT 492
LVV P S +R W RE ++V++Y G + +D +F +KFDV+LT
Sbjct: 276 LVVAPLSTIRNWEREF--ATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLT 333
Query: 493 TYALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFD 552
TY + V P
Sbjct: 334 TYEM------------------------VHP----------------------------- 340
Query: 553 CGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYF 612
G L+ + W +I+DE +KN ++++ + +K L+GTP+QN +++L++
Sbjct: 341 -GISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALM 399
Query: 613 RFLKYDPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPP 672
FL D + + F + N +L +L +LRR K ++ K +PP
Sbjct: 400 HFLDADKFGSLEKFQDI-------NKEEQISRLHQMLAPHLLRRLKKDVLKDK----VPP 448
Query: 673 KTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPR 732
K + +VD S +++ YK + ++ A N +L++LRQ C HP
Sbjct: 449 KKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKISN--------VLMKLRQVCSHPY 500
Query: 733 LVKDY 737
L+ D+
Sbjct: 501 LLPDF 505
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 85/305 (27%)
Query: 443 LVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKD-----HFELA-----KFDVVLT 492
LVV P S +R W RE ++V++Y G + +D F + KFDV+LT
Sbjct: 235 LVVAPLSTIRNWEREF--ATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLT 292
Query: 493 TYALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFD 552
TY + V P
Sbjct: 293 TYEM------------------------VHP----------------------------- 299
Query: 553 CGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYF 612
G L+ + W +I+DE +KN ++++ + +K L+GTP+QN +++L++
Sbjct: 300 -GISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALM 358
Query: 613 RFLKYDPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPP 672
FL D + + F + N +L +L +LRR K ++ K +PP
Sbjct: 359 HFLDADKFGSLEKFQDI-------NKEEQISRLHQMLAPHLLRRLKKDVLKDK----VPP 407
Query: 673 KTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPR 732
K + +VD S +++ YK + ++ A N +L++LRQ C HP
Sbjct: 408 KKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKISN--------VLMKLRQVCSHPY 459
Query: 733 LVKDY 737
L+ D+
Sbjct: 460 LLPDF 464
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 23/198 (11%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNTIDDLYSYFRFLK 616
L ++ W+ +I+DE +KNH + +A+ + R KRR L+GTPIQN++ +L+S FL
Sbjct: 520 LKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 579
Query: 617 YDPYAVYKSFLNTIKVPIS-RNSVH--------GYKKLQAVLRAIMLRRTKGTLIDGKPI 667
+ ++F P + R +V +L V+R +LRR K +
Sbjct: 580 PHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIHRLHHVIRPFILRRKKDEVEKF--- 636
Query: 668 VDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQA 727
LP KT + K D S ++ +YK++ R + + QN + ++LR+
Sbjct: 637 --LPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKSKSLQN------LTMQLRKC 688
Query: 728 CDHPRLV--KDYNSNSNP 743
C+HP L DYN P
Sbjct: 689 CNHPYLFVGGDYNMWKKP 706
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L + W ILDE IKN ++++ A L+A+ R LSGTPIQN I +L+S F FL
Sbjct: 1573 LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMP 1632
Query: 618 DPYAVYKSFLNTIKVPI---------SRNSVHGYKKLQAVLRAIM---LRRTKGTLIDGK 665
+ F + P+ ++++ G ++A+ + +M LRRTK ++
Sbjct: 1633 GFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEEVLS-- 1690
Query: 666 PIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQ-----FKAYAAAGTVNQNYA----- 715
DLP K IQ D S + Y++ S Q K +A + N + A
Sbjct: 1691 ---DLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKAS 1747
Query: 716 -NILLMLLRLRQACDHPRLVKDYNSNSNPVGKDSVEM 751
++ L L + C HP LV + + PV D M
Sbjct: 1748 THVFQALQYLLKLCSHPLLVLG-DKVTEPVASDLAAM 1783
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L + W ILDE IKN ++++ A L+A+ R LSGTPIQN I +L+S F FL
Sbjct: 1604 LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMP 1663
Query: 618 DPYAVYKSFLNTIKVPI---------SRNSVHGYKKLQAVLRAIM---LRRTKGTLIDGK 665
+ F + P+ ++++ G ++A+ + +M LRRTK ++
Sbjct: 1664 GFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEEVLS-- 1721
Query: 666 PIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQ-----FKAYAAAGTVNQNYA----- 715
DLP K IQ D S + Y++ S Q K +A + N + A
Sbjct: 1722 ---DLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKAS 1778
Query: 716 -NILLMLLRLRQACDHPRLVKDYNSNSNPVGKDSVEM 751
++ L L + C HP LV + + PV D M
Sbjct: 1779 THVFQALQYLLKLCSHPLLVLG-DKVTEPVASDLAAM 1814
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L R W +I+DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 306 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 365
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ ++ ++F ++ + ++L VLR +LRR K + G LPPK +
Sbjct: 366 EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 420
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK 735
KV S ++ +YK L + +A A G + +L + ++LR+ C+HP L +
Sbjct: 421 LKVGMSQMQKQYYKAL---LQKDLEAVNAGGERKR----LLNIAMQLRKCCNHPYLFQ 471
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L R W +I+DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 306 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 365
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ ++ ++F ++ + ++L VLR +LRR K + G LPPK +
Sbjct: 366 EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 420
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK 735
KV S ++ +YK L + +A A G + +L + ++LR+ C+HP L +
Sbjct: 421 LKVGMSQMQKQYYKAL---LQKDLEAVNAGGERKR----LLNIAMQLRKCCNHPYLFQ 471
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L R W +I+DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 306 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 365
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ ++ ++F ++ + ++L VLR +LRR K + G LPPK +
Sbjct: 366 EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 420
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK 735
KV S ++ +YK L + +A A G + +L + ++LR+ C+HP L +
Sbjct: 421 LKVGMSQMQKQYYKAL---LQKDLEAVNAGGERKR----LLNIAMQLRKCCNHPYLFQ 471
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 124/312 (39%), Gaps = 80/312 (25%)
Query: 443 LVVCPASVLRQWARELDEKVGDEKLSVLVYHGG-----------NRTKDHFELAKFDVVL 491
LVV PASVL WA E+ D L L Y GG N + + A F +++
Sbjct: 639 LVVAPASVLNNWADEISRFCPD--LKTLPYWGGLQERTILRKNINPKRMYRRDAGFHILI 696
Query: 492 TTYALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSF 551
T+Y L+ DEK +F
Sbjct: 697 TSYQLLVT------------DEK----------YFR------------------------ 710
Query: 552 DCGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSY 611
RV W ++LDEAQ IK+ + + S + R L+GTPIQN + +L++
Sbjct: 711 --------RVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWAL 762
Query: 612 FRFLKYDPYAVYKSFLNTIKVPISRNSVHG-------YKKLQAVLRAIMLRRTKGTLIDG 664
F+ + + F I ++ HG +L A+L+ MLRR K ++
Sbjct: 763 LHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVS- 821
Query: 665 KPIVDLPPKTIQLTKVDFSIEERSFYKKLEAD-SRSQFKAYAAAGTVNQNYANILLMLLR 723
+L KT S +++FY+ ++ S ++ ++ N++ ++++
Sbjct: 822 ----ELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQ 877
Query: 724 LRQACDHPRLVK 735
LR+ C+HP L +
Sbjct: 878 LRKVCNHPELFE 889
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 126/315 (40%), Gaps = 86/315 (27%)
Query: 443 LVVCPASVLRQWARELDE---------KVGDEKLSV-----LVYHGGNRTKDHFELAKFD 488
LV+CP SV W E++ VGD+ + + H +K HF FD
Sbjct: 105 LVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHF--LPFD 162
Query: 489 VVLTTYALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXID 548
V+LTTY + LVD++
Sbjct: 163 VLLTTYDIA--------LVDQD-------------------------------------- 176
Query: 549 SSFDCGSGPLARVGWFRVILDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNTIDD 607
L+++ W I+DEAQ +KN + + RR ++GTPIQN + +
Sbjct: 177 --------FLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTE 228
Query: 608 LYSYFRFLKYDPYAVYKSFLNTIK--------VPISRNSVHGYKKLQAVLRAIMLRRTKG 659
L++ F + FL+ K + +S N YK L+ +L A MLRRTK
Sbjct: 229 LWALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDVS-NDKETYKSLKFILGAFMLRRTKS 287
Query: 660 TLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADS-RSQFKAYAAAGTVNQNYANIL 718
LI+ +V LPP LT++ + S KK+ R + + N+ ++
Sbjct: 288 LLIESGNLV-LPP----LTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQ 342
Query: 719 LMLLRLRQACDHPRL 733
++++LR+AC HP L
Sbjct: 343 NIVIQLRKACSHPYL 357
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 20/189 (10%)
Query: 555 SGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRF 614
S R W +ILDEA IKN ++Q + + +KRR L+GTP+QN + +L+S F
Sbjct: 650 SKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHF 709
Query: 615 LKYDPYAVYKSFLNTIKVPISRNSVHGYKK--------LQAVLRAIMLRRTKGTLIDGKP 666
L + ++ F + PI+ V G +K L VLR +LRR K +
Sbjct: 710 LMPHVFQSHQEFKDWFCNPIA-GMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEK--- 765
Query: 667 IVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQ 726
LP K + S +R+ Y+ A + +Q A + ++ ++ ++++LR+
Sbjct: 766 --QLPSKHEHVIFCRLSKRQRNLYEDFIASTETQ------ATLTSGSFFGMISIIMQLRK 817
Query: 727 ACDHPRLVK 735
C+HP L +
Sbjct: 818 VCNHPDLFE 826
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L R W +I+DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 370
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ ++ ++F ++ + ++L VLR +LRR K + G LPPK +
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 425
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK 735
KV S ++ +YK L + + G + +L + ++LR+ C+HP L +
Sbjct: 426 LKVGMSQMQKQYYKAL---LQKDLEVVNGGGERKR----LLNIAMQLRKCCNHPYLFQ 476
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L R W +I+DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 370
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ ++ ++F ++ + ++L VLR +LRR K + G LPPK +
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 425
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK 735
KV S ++ +YK L + + G + +L + ++LR+ C+HP L +
Sbjct: 426 LKVGMSQMQKQYYKAL---LQKDLEVVNGGGERKR----LLNIAMQLRKCCNHPYLFQ 476
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 23/198 (11%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNTIDDLYSYFRFLK 616
L ++ W +I+DE +KNH +A+ + R KRR L+GTPIQN++ +L+S FL
Sbjct: 502 LKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 561
Query: 617 YDPYAVYKSFLNTIKVPIS---------RNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPI 667
+ +F P + + +L V+R +LRR K +
Sbjct: 562 PHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEVEKF--- 618
Query: 668 VDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQA 727
LP KT + K D S ++ +YK++ R + QN + ++LR+
Sbjct: 619 --LPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQN------LTMQLRKC 670
Query: 728 CDHPRLV--KDYNSNSNP 743
C+HP L DYN P
Sbjct: 671 CNHPYLFVGADYNMCKKP 688
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 560 RVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDP 619
RV W ++LDEAQ IK+ + + S + R L+GTPIQN + +L++ F+
Sbjct: 744 RVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPML 803
Query: 620 YAVYKSFLNTIKVPISRNSVHG-------YKKLQAVLRAIMLRRTKGTLIDGKPIVDLPP 672
+ + F I ++ HG +L A+L+ MLRR K ++ +L
Sbjct: 804 FDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVS-----ELTT 858
Query: 673 KTIQLTKVDFSIEERSFYKKLEAD-SRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
KT S +++FY+ ++ S ++ ++ N++ ++++LR+ C+HP
Sbjct: 859 KTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHP 918
Query: 732 RLVK 735
L +
Sbjct: 919 ELFE 922
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 555 SGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRF 614
S L + W +I+DE +KN +++ + + R L+GTP+QN +D+L+ F
Sbjct: 408 SAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHF 467
Query: 615 LKYDPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKT 674
L + + F K N +L +L +LRR K ++ D+PPK
Sbjct: 468 LDAGKFGSLEEFQEEFK---DINQEEQISRLHKMLAPHLLRRVKKDVMK-----DMPPKK 519
Query: 675 IQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLV 734
+ +VD S ++ +YK A ++ G + NI ++ LR+ C HP ++
Sbjct: 520 ELILRVDLSSLQKEYYK---AIFTRNYQVLTKKGGAQISLNNI---MMELRKVCCHPYML 573
Query: 735 KDYNSNSNPVGKDSVEMAKTL 755
+ PV D+ E K L
Sbjct: 574 E----GVEPVIHDANEAFKQL 590
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 31/201 (15%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L + W +LDE I+N + + C L+ R ++G PIQN + +L+S F F+
Sbjct: 534 LLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFP 593
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQ--------AVLRAI----MLRRTKGTLIDGK 665
V F VPI+ LQ VLR + +LRR K +
Sbjct: 594 GKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV---- 649
Query: 666 PIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNY---ANILLMLL 722
LTK E + L + RS ++A+ A+ V Q + N L +
Sbjct: 650 --------NAHLTKK----TEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGID 697
Query: 723 RLRQACDHPRLVKDYNSNSNP 743
+R+ C+HP L++ +S+ NP
Sbjct: 698 VMRKICNHPDLLEREHSHQNP 718
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L+++ W +++DEA +KN Q+ A K + ++GTP+QN++++L++ FL
Sbjct: 749 LSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 808
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ F+ K S N L LR +LRR + LPPK ++
Sbjct: 809 GKFKNKDEFVENYKNLSSFNESE-LANLHLELRPHILRRVIKDVEKS-----LPPKIERI 862
Query: 678 TKVDFSIEERSFYKK-LEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVK- 735
+V+ S ++ +YK LE + K V N ++L +++ L++ C+HP L +
Sbjct: 863 LRVEMSPLQKQYYKWILERNFHDLNKG------VRGNQVSLLNIVVELKKCCNHPFLFES 916
Query: 736 -------DYNSNS 741
D N NS
Sbjct: 917 ADHGYGGDINDNS 929
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 22/190 (11%)
Query: 566 VILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKS 625
+I DEA +KN +T RA SL KRR LSGTP+QN +++ ++ F
Sbjct: 319 LICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAH 378
Query: 626 FLNTIKVPI-----------SRN-SVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPK 673
F + + PI +N + +L + + +LRRT L + LPPK
Sbjct: 379 FRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSN-----HLPPK 433
Query: 674 TIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRL 733
I++ + + + Y S++ +A A N +L + L++ C+HP+L
Sbjct: 434 IIEVVCCKMTTLQSTLYNHF-ISSKNLKRALAD----NAKQTKVLAYITALKKLCNHPKL 488
Query: 734 VKDYNSNSNP 743
+ D + NP
Sbjct: 489 IYDTIKSGNP 498
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 12/177 (6%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L V W +++DE +KN +++ + + R L+GTP+QN I ++Y+ FL+
Sbjct: 818 LRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQP 877
Query: 618 DPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQL 677
+ SF S V KKL A MLRR K + ++PPKT ++
Sbjct: 878 SSFPSLSSFEERFHDLTSAEKVEELKKLVA---PHMLRRLKKDAMQ-----NIPPKTERM 929
Query: 678 TKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLV 734
V+ + + +Y+ + Q G Q+ NI +++LR+ C+HP L+
Sbjct: 930 VPVELTSIQAEYYRAM-LTKNYQILRNIGKGVAQQSMLNI---VMQLRKVCNHPYLI 982
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 566 VILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKS 625
+I DEA +KN +T RA SL KRR LSGTP+QN +++ ++ F
Sbjct: 319 LICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAH 378
Query: 626 FLNTIKVPI-----------SRN-SVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPK 673
F + + PI +N + +L + + +LRRT L + LPPK
Sbjct: 379 FRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSN-----HLPPK 433
Query: 674 TIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRL 733
I++ + + ++ L Q K A N +L + L++ C+HP+L
Sbjct: 434 IIEVVCCKMTTLQTTYNGCLCM----QLKRALAD---NAKQTKVLAYITALKKLCNHPKL 486
Query: 734 VKDYNSNSNP 743
+ D + NP
Sbjct: 487 IYDTIKSGNP 496
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 81/329 (24%)
Query: 443 LVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKD---HFELAKFDVVLTTYALVTN 499
LVV P ++L W +EL VG +++ Y + ++ H L ++LTTY +V N
Sbjct: 429 LVVAPKTLLPHWMKEL-ATVGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVRN 487
Query: 500 EVPK----QPLVDEEDDEKNAEKFGVSPEFFXXXXXXXXXXXXXXXXXXXXIDSSFDCGS 555
DE+D++ N
Sbjct: 488 NTKALQGDDHYTDEDDEDGNK--------------------------------------- 508
Query: 556 GPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRF- 614
W +ILDE IKN TQ A++ + + R +SGTPIQN + +L++ F F
Sbjct: 509 -------WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFS 561
Query: 615 ---LKYDPYAVYKSFLNTIKVPISRNSVHG--------YKKLQAVLRAIMLRRTKGTLI- 662
L D +++ + I +N+ K L+ ++ LRR K +
Sbjct: 562 CPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFG 621
Query: 663 -DGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNY-ANILLM 720
DG T +L+K D E + +L A R ++A+ + V + + L
Sbjct: 622 DDG--------ATSKLSKKD----EIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAA 669
Query: 721 LLRLRQACDHPRLVKDYNSNSNPVGKDSV 749
L L++ CDHP L+ + G DS
Sbjct: 670 LTILKKICDHPLLLTKRAAEDVLEGMDST 698
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 42/208 (20%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRA-------KRRWCLSGTPIQNTIDDLYS 610
L+++ W +I+DE IKN A C L A R L+GTP+QN +++L++
Sbjct: 873 LSKIHWHYIIIDEGHRIKN-------ASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 611 YFRFLKYDPYAVYKSFLNTIKVPISRNSVHG--------------YKKLQAVLRAIMLRR 656
FL + + + F P N +L VLR +LRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 657 TKGTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYAN 716
K + + +LP K +L + + S ++ K++E + S A + A
Sbjct: 986 LKHKVEN-----ELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRA--------- 1031
Query: 717 ILLMLLRLRQACDHPRLVKDYNSNSNPV 744
+ ++ LR C+HP L + ++ N +
Sbjct: 1032 VHNSVMELRNICNHPYLSQLHSEEVNNI 1059
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 42/208 (20%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRA-------KRRWCLSGTPIQNTIDDLYS 610
L+++ W +I+DE IKN A C L A R L+GTP+QN +++L++
Sbjct: 873 LSKIHWHYIIIDEGHRIKN-------ASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 611 YFRFLKYDPYAVYKSFLNTIKVPISRNSVHG--------------YKKLQAVLRAIMLRR 656
FL + + + F P N +L VLR +LRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 657 TKGTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYAN 716
K + + +LP K +L + + S ++ K++E + S A + A
Sbjct: 986 LKHKVEN-----ELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRA--------- 1031
Query: 717 ILLMLLRLRQACDHPRLVKDYNSNSNPV 744
+ ++ LR C+HP L + ++ N +
Sbjct: 1032 VHNSVMELRNICNHPYLSQLHSEEVNNI 1059
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 42/208 (20%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRA-------KRRWCLSGTPIQNTIDDLYS 610
L+++ W +I+DE IKN A C L A R L+GTP+QN +++L++
Sbjct: 873 LSKIHWHYIIIDEGHRIKN-------ASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 611 YFRFLKYDPYAVYKSFLNTIKVPISRNSVHG--------------YKKLQAVLRAIMLRR 656
FL + + + F P N +L VLR +LRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 657 TKGTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYAN 716
K + + +LP K +L + + S ++ K++E + S A + A
Sbjct: 986 LKHKVEN-----ELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRA--------- 1031
Query: 717 ILLMLLRLRQACDHPRLVKDYNSNSNPV 744
+ ++ LR C+HP L + ++ N +
Sbjct: 1032 VHNSVMELRNICNHPYLSQLHSEEVNNI 1059
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 29/190 (15%)
Query: 563 WFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAV 622
W V++DE +KNH+ ++ R L+ + L+GTP+QN + +L+S F+ D +
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTS 386
Query: 623 YKSFLN-----------TIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLP 671
+ F + K + KL +LR +LRR K + + LP
Sbjct: 387 HDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDV-----ELSLP 441
Query: 672 PKTIQLTKVDFSIEERSFYKKLEADS------RSQFKAYAAAGTVNQNYANILLMLLRLR 725
K + + ++ F + L ++ + + G +N ++++LR
Sbjct: 442 RKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNN-------LVIQLR 494
Query: 726 QACDHPRLVK 735
+ C+HP L++
Sbjct: 495 KNCNHPDLLQ 504
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 19/136 (13%)
Query: 549 SSFDCG--SGP-LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTI 605
+SFD GP L+ + W VI DEA +KN ++++ AC ++ K+R L+GT +QN I
Sbjct: 251 TSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKI 310
Query: 606 DDLYSYFRFLKYDPYAVYKSFLNTIKVPISRN----------SVHGYKK--LQAVLRAIM 653
+L++ F ++ + F + P+ + +K L ++LR M
Sbjct: 311 SELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYM 370
Query: 654 LRRTK----GTLIDGK 665
LRRTK G L+ GK
Sbjct: 371 LRRTKEETIGHLMMGK 386
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L++V W +I+DEAQ +K+ + +AR R +RR L+GTP+QN + +L+S L
Sbjct: 1098 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1157
Query: 618 DPYAVYKSFLNTIKVPISRNS-VHGYK--------------KLQAVLRAIMLRRTKGTLI 662
D + K+F + P + H + +L +L MLRR + +
Sbjct: 1158 DVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRR-RVEDV 1216
Query: 663 DGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQF-----KAYAAAGTVNQN--YA 715
+G LP K + + S + + Y ++A + K A + Q Y
Sbjct: 1217 EG----SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYR 1272
Query: 716 NILLMLLRLRQACDHPRLVKDY 737
+ + LR+AC+HP L Y
Sbjct: 1273 TLNNRCMELRKACNHPLLNYPY 1294
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 558 LARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 617
L++V W +I+DEAQ +K+ + +AR R +RR L+GTP+QN + +L+S L
Sbjct: 1097 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1156
Query: 618 DPYAVYKSFLNTIKVPISRNS-VHGYK--------------KLQAVLRAIMLRRTKGTLI 662
D + K+F + P + H + +L +L MLRR + +
Sbjct: 1157 DVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRR-RVEDV 1215
Query: 663 DGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQF-----KAYAAAGTVNQN--YA 715
+G LP K + + S + + Y ++A + K A + Q Y
Sbjct: 1216 EG----SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYR 1271
Query: 716 NILLMLLRLRQACDHPRLVKDY 737
+ + LR+AC+HP L Y
Sbjct: 1272 TLNNRCMELRKACNHPLLNYPY 1293
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 566 VILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKS 625
++ DEA IKN + +A ++ +RR L+G+P+QN + + Y F++
Sbjct: 872 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 931
Query: 626 FLNTIKVPISR----NSVHGYKKLQAVLRAIMLRRTKGTL--IDGKPI-VDLPPKTIQLT 678
F N + PI NS K+ I+ + KG + +D + DLPPKT+ +
Sbjct: 932 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 991
Query: 679 KVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
V S +R Y++ + ++ T + N L Q +HP
Sbjct: 992 SVKLSPLQRILYQRF-----LELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 566 VILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKS 625
++ DEA IKN + +A ++ +RR L+G+P+QN + + Y F++
Sbjct: 872 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 931
Query: 626 FLNTIKVPISR----NSVHGYKKLQAVLRAIMLRRTKGTL--IDGKPI-VDLPPKTIQLT 678
F N + PI NS K+ I+ + KG + +D + DLPPKT+ +
Sbjct: 932 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 991
Query: 679 KVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
V S +R Y++ + ++ T + N L Q +HP
Sbjct: 992 SVKLSPLQRILYQRF-----LELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 566 VILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKS 625
++ DEA IKN + +A ++ +RR L+G+P+QN + + Y F++
Sbjct: 872 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 931
Query: 626 FLNTIKVPISR----NSVHGYKKLQAVLRAIMLRRTKGTL--IDGKPI-VDLPPKTIQLT 678
F N + PI NS K+ I+ + KG + +D + DLPPKT+ +
Sbjct: 932 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 991
Query: 679 KVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
V S +R Y++ + ++ T + N L Q +HP
Sbjct: 992 SVKLSPLQRILYQRF-----LELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 566 VILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKS 625
++ DEA IKN + +A ++ +RR L+G+P+QN + + Y F++
Sbjct: 851 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 910
Query: 626 FLNTIKVPISR----NSVHGYKKLQAVLRAIMLRRTKGTL--IDGKPI-VDLPPKTIQLT 678
F N + PI NS K+ I+ + KG + +D + DLPPKT+ +
Sbjct: 911 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 970
Query: 679 KVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHP 731
V S +R Y++ + ++ T + N L Q +HP
Sbjct: 971 SVKLSPLQRILYQRF-----LELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1018