Miyakogusa Predicted Gene

Lj5g3v2261780.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2261780.2 tr|Q05AP3|Q05AP3_DANRE Zgc:152777 OS=Danio rerio
GN=nsrp1 PE=2 SV=1,40.44,1e-18,DUF2040,Domain of unknown function
DUF2040; seg,NULL; coiled-coil,NULL; INNER MEMBRANE
PROTEIN,NULL,CUFF.57118.2
         (318 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27285.1 | Symbols:  | Coiled-coil domain-containing protein ...   208   5e-54
AT2G27280.1 | Symbols:  | Coiled-coil domain-containing protein ...   186   2e-47
AT1G55928.1 | Symbols:  | Coiled-coil domain-containing protein ...   144   7e-35

>AT2G27285.1 | Symbols:  | Coiled-coil domain-containing protein 55
           (DUF2040) | chr2:11676079-11677897 REVERSE LENGTH=323
          Length = 323

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 141/329 (42%), Positives = 187/329 (56%), Gaps = 27/329 (8%)

Query: 1   MSKYGLNXXXXXXXXXXXXXXXXTPFGFNDDDED-DVEREIALQAAKKKSLKEVEEQQKK 59
           M KYGL                  P    D++ED DVE+EI+ QA K K+ KE+EEQ KK
Sbjct: 1   MKKYGLQIRAPSQKKQSSSRPPLRPASIFDEEEDHDVEKEISRQATKTKAHKEIEEQHKK 60

Query: 60  ALEEDPSVFDYDGVYEKMKEKVAKPLIQDREERKPKYIQNLMKKAKEREQYREIVYEKKV 119
           ALEEDPS F YD VY+ MK+K   P +QDREERKP+YIQNLMK+A+ RE+  EIVYE+K+
Sbjct: 61  ALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERKL 120

Query: 120 AKERDKDDHLYADKDKFVTEAYRRKLAXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYS 179
           AKER+KD+HL++DK+KFVT AY+RKL                   DDVTKKKD L DFY 
Sbjct: 121 AKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKD-LSDFYF 179

Query: 180 NLDRNVAYGAKDAQGRKRDNQAEHRVPETHEGVNPDASDRHQEHGDASDERQHSLG---- 235
           N+ +NVA+GA++ + ++ +   E R  E  E          Q   +  +E +  +     
Sbjct: 180 NIGKNVAFGAREVEAKEAEKLEEQRKAEKLE---------EQRKAEKLEELRKEVTRVEK 230

Query: 236 -NSSPPVEFSKEKIGDQGEPSNPSNRSISPTDM------KPNPEALVEEENKPVEQPSAS 288
              SP  E S     D GE  +  ++S+ P +       K       EE    +++ +  
Sbjct: 231 KRKSPEKEVS----PDSGEFGSSRSKSLEPLEAEQAVSEKEMGSDGTEERKSSIKEAAKE 286

Query: 289 QPKA-DHHKRNQDAVAAAKERFLARKKAK 316
            PKA +  KR +DA+AAAKERFLARKKAK
Sbjct: 287 VPKAINDQKRREDAIAAAKERFLARKKAK 315


>AT2G27280.1 | Symbols:  | Coiled-coil domain-containing protein 55
           (DUF2040) | chr2:11673826-11675613 REVERSE LENGTH=427
          Length = 427

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 173/291 (59%), Gaps = 36/291 (12%)

Query: 26  FGFNDDDEDDVEREIALQAAKKKSLKEVEEQQKKALEEDPSVFDYDGVYEKMKEKVAKPL 85
           FG  DD+E+DVE+EI+ QA+K KSLK++E+Q KKA+EEDPS F YD VY+ +K + A P 
Sbjct: 170 FG-EDDEENDVEKEISRQASKTKSLKKIEKQHKKAIEEDPSAFAYDEVYDDIKHEAALPR 228

Query: 86  IQDREERKPKYIQNLMKKAKEREQYREIVYEKKVAKERDKDDHLYADKDKFVTEAYRRKL 145
           +QDREE K +YIQ++MK+A+ RE+  EIVYE+K+AKER KD+HLY+DK+KFVT  ++RKL
Sbjct: 229 MQDREEHKSRYIQHIMKQAERREKEHEIVYERKLAKERAKDEHLYSDKEKFVTGPFKRKL 288

Query: 146 AXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYSNLDRNVAYGAKDAQGRKRDNQAEHRV 205
                              DDVTKK D L +FY N+ +NVA+GA+D + R+     E R 
Sbjct: 289 EEQKKWLEEERLRELREERDDVTKKND-LSEFYINIGKNVAFGARDIEAREAGRLKELRK 347

Query: 206 PETHEGVNPDASDRHQEHGDASDERQHSLGNSSPPVEFSKEKIGDQGEPSNPSNRSISPT 265
            +  E +  + + + ++               SP  E S     D G+    S +S+ P 
Sbjct: 348 VDRLEELRKEETRKEKKR-------------KSPEKEVS----PDSGDFGLSSKKSVKPQ 390

Query: 266 DMKPNPEALVEEENKPVEQPSASQPKADHHKRNQDAVAAAKERFLARKKAK 316
           D      A ++EE K  ++ +            +DA+A AKERFL+RKKAK
Sbjct: 391 D------ASIKEEAKETQKAT-----------REDAIATAKERFLSRKKAK 424


>AT1G55928.1 | Symbols:  | Coiled-coil domain-containing protein 55
           (DUF2040) | chr1:20917471-20918367 FORWARD LENGTH=298
          Length = 298

 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 7/212 (3%)

Query: 1   MSKYGLNXXXXXXXXXXXXXXXXTPFGFNDDDEDDVEREIALQAAKKKSLKEVEEQQKKA 60
           M+K+GL                  P    D++++DV++EI+ QA+K KSLK+ EEQ KKA
Sbjct: 12  MNKFGLQLRKTLSKKVLPI----APILGEDEEDNDVDKEISRQASKTKSLKKFEEQHKKA 67

Query: 61  LEEDPSVFDYDGVYEKMKEKVAKPLIQDREE-RKPKYIQNLMKKAKEREQYREIVYEKKV 119
           LEEDP  F YD VY+  K++   P + +R+E  KP Y Q + +KA  R++ REIVYE+K+
Sbjct: 68  LEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKPIYNQLMKEKADRRQKEREIVYERKL 127

Query: 120 AKERDKDDHLYADKDKFVTEAYRRKLAXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYS 179
           AKER K+ HL+ D+ K VT +Y+RKL                   DDVTKKKD L DFY 
Sbjct: 128 AKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSEERLRELGEEKDDVTKKKD-LSDFYF 186

Query: 180 NLDRNVAYGAKDAQGRKRDNQAEHR-VPETHE 210
           N+ +NVA+GA+D + R+ +   E R VP+  E
Sbjct: 187 NIGKNVAFGARDIKARETERLKEQRKVPKLEE 218