Miyakogusa Predicted Gene

Lj5g3v2258590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2258590.1 Non Chatacterized Hit- tr|I1LF87|I1LF87_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20745
PE,73.08,0.00000000003,seg,NULL; TCP,Transcription factor,
TCP,CUFF.57098.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08330.1 | Symbols:  | TCP family transcription factor  | chr...    62   6e-10
AT5G23280.1 | Symbols:  | TCP family transcription factor  | chr...    57   1e-08

>AT5G08330.1 | Symbols:  | TCP family transcription factor  |
           chr5:2680828-2681547 FORWARD LENGTH=239
          Length = 239

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 36/48 (75%)

Query: 70  MSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           M+ +DG  +  +I  Q +N+    +VKKPPSKDRHSKVDGRGRRIRMP
Sbjct: 1   MADNDGAVSNGIIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMP 48


>AT5G23280.1 | Symbols:  | TCP family transcription factor  |
           chr5:7843017-7843769 FORWARD LENGTH=250
          Length = 250

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 5/42 (11%)

Query: 76  TTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           ++NG++I+     QQ  + VKKPP+KDRHSKVDGRGRRIRMP
Sbjct: 20  SSNGALIE-----QQPSVVVKKPPAKDRHSKVDGRGRRIRMP 56