Miyakogusa Predicted Gene
- Lj5g3v2258370.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2258370.1 tr|G7ZXC0|G7ZXC0_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_053s1052 PE=4 SV=1,83.49,0,seg,NULL;
RNI-like,NULL; GB DEF: AT2G17020 (AT2G17020/AT2G17020),NULL;
F-BOX/LEUCINE RICH REPEAT PRO,CUFF.57089.1
(645 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17020.1 | Symbols: | F-box/RNI-like superfamily protein | c... 663 0.0
AT1G55590.1 | Symbols: | RNI-like superfamily protein | chr1:20... 256 3e-68
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr... 65 2e-10
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 64 3e-10
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 59 9e-09
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 57 3e-08
AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-ri... 51 2e-06
AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:21... 50 3e-06
>AT2G17020.1 | Symbols: | F-box/RNI-like superfamily protein |
chr2:7396559-7398787 REVERSE LENGTH=656
Length = 656
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/621 (56%), Positives = 446/621 (71%), Gaps = 5/621 (0%)
Query: 13 EVNLEHLPYALLATIMTKLDIASICSLASTSSTFRSCANQILSFLPNFHLVDIAXXXXXX 72
E +L+ LP ALL TIMTKLD+AS+CSLAST T +SC ++L+F PNFH+ +++
Sbjct: 20 ERSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHIFNVSLSMETV 79
Query: 73 XXXXXXXXXXQSLKVDCGRLDDSAIALLVKPSLHELCLHNCADFSGKLLSEIGTRCKDLR 132
SLK+DCGRL +SAI +LV+PSL E+ LHNC DFSG L+SEIG +CKDLR
Sbjct: 80 RPLLFPNQQLSSLKLDCGRLGNSAIDILVRPSLREISLHNCRDFSGDLISEIGRKCKDLR 139
Query: 133 SLYLGSVAEKRGRAIHISDLEELLSGCSQLEALNLMFDVSLFLRHNFARVWASASEKLTS 192
L LGSVAEK GR+I LE+LL+GCS LE L LMFD+SL+LR R++ S++LT
Sbjct: 140 LLCLGSVAEKVGRSISRCALEDLLNGCSHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTH 199
Query: 193 LEIGYISSVTVTELLSPNLGSHQSLSPVQPS-VLPGIQKLCLSVDYITDAMVSTISKGLV 251
LE+G+I+S +T+LL+ S Q + V S VL +Q+L LSVD ITDA+V ISK L
Sbjct: 200 LELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQNVQRLRLSVDCITDAVVKAISKSLP 259
Query: 252 FLTHLDLRDAPLIEPRITFDLTNAGLQQINPHGRLNYLSLIRSQEFLITYFRRVNDLGLL 311
L LD+RDAPL +PR DLT+ GL +IN +G+L +LSLIRSQEF TYFRRV+D G+L
Sbjct: 260 SLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKLKHLSLIRSQEFHPTYFRRVSDQGML 319
Query: 312 LMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDLVFHDISATSLT 371
+ADKC +E+ICLGGFCRVTD GFKTILHSC+ L K + HG +LTDLVFHDI AT+L+
Sbjct: 320 FLADKCLGMETICLGGFCRVTDAGFKTILHSCASLSKFSIYHGPKLTDLVFHDILATTLS 379
Query: 372 LLHVSLRWCNLLTNHAVLRLVSNVELKILDLRYCRSLGDDALQAIGTLTKLKVLLLDGSD 431
L HVSLR C+LLT+HA+ +L S+++L+ LDLR CR+L D+ L A+ L KLKVLLLDG+D
Sbjct: 380 LSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCRNLRDETLTAVSHLPKLKVLLLDGAD 439
Query: 432 ITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCGMLELREXXXXXXXXXXXXG 491
I+D GLS L+ V++SL +LS+RGC+ LTDK ++ LF G L LRE
Sbjct: 440 ISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLALRELDLSNLPNLTDAA 499
Query: 492 VLMLAKSRILLFELRMRQCPLIGDTSVMALASMLVNEARWHGSSLRVLDLYNCGGITQLS 551
+ LAKS + +L++R+C LIGD SVMALAS V E GSSL +LDLY+CGGITQLS
Sbjct: 500 IFALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGGITQLS 559
Query: 552 FRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLHVACHGEELGADPYDISDGLYTHD 611
F+WLKKP+FPRLKWLG+TGSVNRD+VDALAR RP L V+C GEELG D D D H
Sbjct: 560 FKWLKKPFFPRLKWLGITGSVNRDIVDALARRRPHLQVSCRGEELGNDGEDDWDSADIHQ 619
Query: 612 YDEV--DEFEQWLL--EADID 628
+ E DE EQW+L E D++
Sbjct: 620 HIEAQEDELEQWILGDEGDVE 640
>AT1G55590.1 | Symbols: | RNI-like superfamily protein |
chr1:20769476-20771756 REVERSE LENGTH=607
Length = 607
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 201/614 (32%), Positives = 313/614 (50%), Gaps = 31/614 (5%)
Query: 16 LEHLPYALLAT-IMTKLDIASICSLASTSSTFRSCA-NQILSFLPNFHLVDIAXXXXXXX 73
+E + ++LA I+ +LD+ ++CS+A S+T RS + +L L + L +
Sbjct: 1 MEEVTRSVLAEEILKRLDLENLCSVACVSTTLRSAVVSGVLPSLTSLDLSVFSPDDETLN 60
Query: 74 XXXXXXXXXQSLKVDCGRLDDSAIALLVKPSLHELCLHNCADFSGKLLSEIGTRCKDLRS 133
SL ++C RL+ +++ ++ P L EL L C+ S +L+ IGT C +LR
Sbjct: 61 HVLRGCIGLSSLTLNCLRLNAASVRGVLGPHLRELHLLRCSLLSSTVLTYIGTLCPNLRV 120
Query: 134 LYLGSVAEKRGRAIHISDLEELLSGCSQLEALNLMFDVSLFLRHNFARVWASASEKLTSL 193
L L +A+ + S+L ++L+GC LE+L L L F V S E L +L
Sbjct: 121 LTL-EMADLDSPDVFQSNLTQMLNGCPYLESLQLNIRGILVDATAFQSVRFSLPETLKAL 179
Query: 194 EIGYI-----------SSVTVTELLSPNLGSHQSLSPVQPSVLPGIQKLCLSVDYITDAM 242
+ + VT T L P+ S + + PS +Q L L +D I+D +
Sbjct: 180 RLQPLLESEAILLMNRFKVTGTYLSQPDYNS----ALLSPSPSFTLQSLSLVLDLISDRL 235
Query: 243 VSTISKGLVFLTHLDLRDAPLIEPRITFDLTNAGLQQINPHGRLNYLSLIRSQEFLITYF 302
+ I+ L L LDL D P EP DLT GLQ + +L LSL+R+ F
Sbjct: 236 IIAITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQQLTSLSLVRTCYNRKISF 295
Query: 303 RRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDLVF 362
+R+ND+G+ L+++ C LES+ LGGF +V+D GF ++LHSC L K +V L+DL F
Sbjct: 296 KRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAF 355
Query: 363 HDISATSLTLLHVSLRWCNLLTNHAVLRLVSNVELKILDLRYCRSLGDDALQAIGTLTKL 422
HD++ +S +L V L C L+T+ AV +L L++LDL C+S+ D L ++ L KL
Sbjct: 356 HDVTGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGSCKSISDSCLNSVSALRKL 415
Query: 423 KVLLLDGSDITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCGMLE--LREXX 480
L L G+D+TD+G+ L S + + LSLRGC+R++D+ I+ L + G + L
Sbjct: 416 TSLNLAGADVTDSGMLALGKSDV-PITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLD 474
Query: 481 XXXXXXXXXXGVLMLAKSRILLFELRMRQCPLIGDTSVMALASMLVNEARWHGSSLRVLD 540
+ + L EL +R C + D+S+ +LA+ +A LR L+
Sbjct: 475 LGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATW-ERQAEGGSKQLRKLN 533
Query: 541 LYNCGGITQLSFRWLKKPYFPRLKWLGVTGSV---NRDMVDAL-ARSRPFLHVACHGEEL 596
++NC +T + RWL KP F L WLG+ + ++ V A+ RP+L + G EL
Sbjct: 534 VHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCEL 593
Query: 597 GADPYDISDGLYTH 610
G SDG H
Sbjct: 594 GC-----SDGWEFH 602
>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794842-8796882 REVERSE LENGTH=623
Length = 623
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 41/282 (14%)
Query: 301 YFRRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDL 360
+ +V D+GL +A C +L + L V+D G I SC + KL ++ +TD
Sbjct: 150 FESKVTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDS 209
Query: 361 VFHDISATSLTLLHVSLRWCNLLTNHAVLRLVSN--VELKILDLRYCRSLGDDAL----- 413
I+ + L +++ C+ + N LR ++ V L+ + +R C +GD +
Sbjct: 210 GLVAIAENCVNLSDLTIDSCSGVGNEG-LRAIARRCVNLRSISIRSCPRIGDQGVAFLLA 268
Query: 414 QAIGTLTKLKVLLLD------------GSDITDAGLSCLR------------PSVINSLY 449
QA LTK+K+ +L+ G+ +TD L L+ + L
Sbjct: 269 QAGSYLTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLK 328
Query: 450 ALSLRGCKRLTDKCIAVLFHGCGMLELREXXXXXXXXXXXXGVLMLAKSRILLFELRMRQ 509
+LS+ C+ +TD + + +GC +L+ G++ LAKS + L L++ +
Sbjct: 329 SLSVMSCRGMTDVGLEAVGNGC--PDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEE 386
Query: 510 CPLIGDTSVMALASMLVNEARWHGSSLRVLDLYNCGGITQLS 551
C I +M L+N GS L+ L NC GI+ +
Sbjct: 387 CHRINQFGLMGF---LMN----CGSKLKAFSLANCLGISDFN 421
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 21/243 (8%)
Query: 238 ITDAMVSTISKGLVFLTHLDLRDAPLIEPRITFDLTNAGLQQINPHGRLNYLSLIRSQEF 297
+TD+ ++ IS+G FL L+L + I T+ GL I GR LSL+ +F
Sbjct: 85 VTDSDLAVISEGFKFLRVLNLHNCKGI--------TDTGLASI---GRC--LSLL---QF 128
Query: 298 L-ITYFRRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQ 356
L ++Y R+++D GL +A+ C +L ++ L G +TD K++ C L L + T
Sbjct: 129 LDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTN 188
Query: 357 LTDLVFHDISATSLTLLHVSLRWCNLLTNHAVLRLVSNV--ELKILDLRYCRSLGDDALQ 414
+TD D+ + + + C+ + + V + LK L L C +G++++
Sbjct: 189 ITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCYKVGNESIS 248
Query: 415 AIGTLTK-LKVLLLDG-SDITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCG 472
++ K L+ L++ G DI+D + L S +SL L + C ++D ++ + C
Sbjct: 249 SLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQCK 308
Query: 473 MLE 475
LE
Sbjct: 309 NLE 311
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 14/280 (5%)
Query: 294 SQEFLITYFRRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTH 353
SQ +++ V D L ++++ L + L +TDTG +I S L L V++
Sbjct: 74 SQSISRSFYPGVTDSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSY 133
Query: 354 GTQLTDLVFHDISATSLTLLHVSLRWCNLLTNHAVLRLVSNV-ELKILDLRYCRSLGDDA 412
+L+D ++ L + L C +T+ ++ L +L+ L L+ C ++ D
Sbjct: 134 CRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSG 193
Query: 413 L-QAIGTLTKLKVLLLDG-SDITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHG 470
L + K+K L ++ S++ DAG+S + + +SL L L C ++ ++ I+ L
Sbjct: 194 LADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQF 253
Query: 471 CGMLELREXXXXXXXXXXXXGVLMLAKS-RILLFELRMRQCPLIGDTSVMALASMLVNEA 529
C LE +++LA S + L LRM C I D+S+ + N
Sbjct: 254 CKNLE--TLIIGGCRDISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKN-- 309
Query: 530 RWHGSSLRVLDLYNCGGITQLSFRWLKKPYFPRLKWLGVT 569
L LD+ C +T +FR L LK L V+
Sbjct: 310 ------LEALDIGCCEEVTDTAFRDLGSDDVLGLKVLKVS 343
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 159/406 (39%), Gaps = 63/406 (15%)
Query: 87 VDCGRLDDSAIALLVK--PSLHELCLHNCADFSGKLLSEIGTRCKDLRSLYLGSVAEKRG 144
V+ L D+ + L P + L L C + S L + +C L+SL L +G
Sbjct: 122 VESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDL------QG 175
Query: 145 RAIHISDLEELLSGCSQLEALNLMF-----DVSLFLRHNFARVWASASEKLTSLEIGYIS 199
+ L + C QLE LNL F DV + + S+ L S IG +
Sbjct: 176 CYVGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVI------DLVVGCSKSLKS--IGVAA 227
Query: 200 SVTVTELLSPNLGSHQSLSPVQPSVLPGIQKLCLSVDYITDAMVSTISKGLVFLTHLDLR 259
S +T+L +GSH L V L L +YI D + +++G L +L L+
Sbjct: 228 SAKITDLSLEAVGSHCKLLEV----------LYLDSEYIHDKGLIAVAQGCHRLKNLKLQ 277
Query: 260 DAPLIEPRITFDLTNAGLQQINPHGRLNYLSLIRSQEFLITY-FRRVNDLGLLLMADKCA 318
+T+ + L S E L Y F+ D G+ +
Sbjct: 278 ---------CVSVTDVAFAAVG--------ELCTSLERLALYSFQHFTDKGMRAIGKGSK 320
Query: 319 NLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDLVFHDISATSLTLLHVSLR 378
L+ + L V+ G + I H C L ++++ + I + L ++L
Sbjct: 321 KLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALL 380
Query: 379 WCNLLTNHAVLRLVSNVE-LKILDLRYCRSLGDDALQAIG----TLTKL---KVLLLDGS 430
+C + N A+ + + L+IL L C +GD A+ +I L KL + +
Sbjct: 381 YCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNK 440
Query: 431 DITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCGMLEL 476
I G C SL LSLR C ++ +K + + GC + +L
Sbjct: 441 GIISIGKHC------KSLTELSLRFCDKVGNKALIAIGKGCSLQQL 480
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 116/255 (45%), Gaps = 18/255 (7%)
Query: 304 RVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDLVFH 363
+V+DLGL + C +L S+ L +TD G I C+ L KL++ + +TD
Sbjct: 163 KVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLV 222
Query: 364 DISATSLTLLHVSLRWCNLLTNHAVLRLV-SNVELKILDLRYCRSLGDDALQAI-----G 417
I+ + L ++L C+ + + +L + S +LK + ++ C + D + ++
Sbjct: 223 AIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTC 282
Query: 418 TLTKLKVLLLDGSDITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCGMLELR 477
+L KLK+ +L+ +D++ A + S+ + L L G +++K V+ +G G+ +L
Sbjct: 283 SLAKLKLQMLNVTDVSLAVVGHYGLSITD----LVLAGLSHVSEKGFWVMGNGVGLQKLN 338
Query: 478 EXXXXXXXXXXXXGVLMLAKSRILLFELRMRQCPLIGDTSVMALASMLVNEARWHGSSLR 537
G+ + K + + + + PL+ D +++ A + SL
Sbjct: 339 SLTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASL--------SLE 390
Query: 538 VLDLYNCGGITQLSF 552
L L C +TQ F
Sbjct: 391 SLQLEECHRVTQFGF 405
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 28/292 (9%)
Query: 305 VNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDLVFHD 364
+ D GLL +A+ CA LE + L +TD G I SC L +L + +++ D
Sbjct: 190 ITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLA 249
Query: 365 ISATSLTLLHVSLRWCNLLTNHAVLRLVSNVELKILDLR-YCRSLGDDALQAIG--TLTK 421
I+ + L VS++ C L+ + + L+SN + L+ ++ D +L +G L+
Sbjct: 250 IARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVTDVSLAVVGHYGLSI 309
Query: 422 LKVLLLDGSDITDAGLSCLRPSV-INSLYALSLRGCKRLTDKCIAVLFHGCGMLELREXX 480
++L S +++ G + V + L +L++ C+ +TD + + GC +++
Sbjct: 310 TDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQGVTDMGLESVGKGCP--NMKKAI 367
Query: 481 XXXXXXXXXXGVLMLAKSRILLFELRMRQCPLIGDTSVMA---------LASMLVN---- 527
G++ AK+ + L L++ +C + A LVN
Sbjct: 368 ISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGFFGSLLNCGEKLKAFSLVNCLSI 427
Query: 528 -------EARWHGSSLRVLDLYNCGGITQLSFRWLKK--PYFPRLKWLGVTG 570
A H S+LR L + NC G + + K P + G+ G
Sbjct: 428 RDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLEDIDLCGLKG 479
>AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich
repeat, cysteine-containing subtype
(InterPro:IPR006553); BEST Arabidopsis thaliana protein
match is: RNI-like superfamily protein
(TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins
in 240 species: Archae - 0; Bacteria - 125; Metazoa -
2326; Fungi - 765; Plants - 1373; Viruses - 0; Other
Eukaryotes - 439 (source: NCBI BLink). |
chr2:2352333-2355419 REVERSE LENGTH=762
Length = 762
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 295 QEFLITYFRRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHG 354
++ ++T R+++D + ++++ C NL + L C++TD+ + + C L KL
Sbjct: 592 KQLILTNSRKLSDSSIKVISENCPNLSVLDLANVCKLTDSSLGYLANGCQALEKLIFCRN 651
Query: 355 TQLTDLVFHDISATSLTLLHVSLRWCNLLTNHAVLRLVSNVE-LKILDLRYCRSLGDDAL 413
+ V + +L +SL + ++ L L + + L+ILD+ +CR + +D L
Sbjct: 652 PFSDEAVAAFVETAGGSLKELSLNNVKKVGHNTALALAKHSDKLQILDISWCREMSNDLL 711
Query: 414 QAI-GTLTKLKVLLLDG-SDITD 434
I + LKVL + G S +TD
Sbjct: 712 GYIVDNSSSLKVLKVFGCSQVTD 734
>AT3G58530.1 | Symbols: | RNI-like superfamily protein |
chr3:21645759-21648219 FORWARD LENGTH=353
Length = 353
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Query: 297 FLITYFRRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQ 356
F I + RV D G+ + C ++ + L G +TD + + S L L +T +
Sbjct: 142 FSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVK 201
Query: 357 LTDLVFHDISATSLTLLHVSLRWCNLLTNHAVLRLVSNVELKILDLRYCRSLGDDALQAI 416
+TD + +L ++L + T+ A +++ +L+ LD+ +++ D+ + I
Sbjct: 202 ITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLADLRFLDICGAQNISDEGIGHI 261
Query: 417 GTLTKLKVLLLDGS-DITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCG 472
KL+ L L ITDAG++ + S SL LSL G +TD+C+ L C
Sbjct: 262 AKCNKLESLNLTWCVRITDAGVNTIANSC-TSLEFLSLFGIVGVTDRCLETLSQTCS 317
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Query: 303 RRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCSCLLKLKVTHGTQLTDLVF 362
++++D G+ + C L+ + RVTD G + ++ +C + L ++ LTD
Sbjct: 122 QKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSM 181
Query: 363 HDISATSLTLLHVSLRWCNLLTNHAVLRLVSN-VELKILDLRYCRSLGDDALQAIGTLTK 421
++ + L +++ C +T+ +L+++ L+ L+L D A I L
Sbjct: 182 QLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLAD 241
Query: 422 LKVLLLDGS-DITDAGLSCLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCGMLEL 476
L+ L + G+ +I+D G+ + N L +L+L C R+TD + + + C LE
Sbjct: 242 LRFLDICGAQNISDEGIG--HIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEF 295